Wall clock time and date at job start Sat Apr 11 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 N 1.46896 * 109.47214 * 260.30676 * 8 7 6 10 10 C 1.46894 * 111.00421 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47434 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47108 * 180.02562 * 11 10 9 13 13 N 1.46504 * 109.47190 * 180.02562 * 12 11 10 14 14 C 1.46498 * 120.00195 * 89.99733 * 13 12 11 15 15 C 1.34777 * 119.99499 * 270.00034 * 13 12 11 16 16 O 1.21280 * 120.00416 * 359.97438 * 15 13 12 17 17 C 1.50707 * 119.99624 * 179.97438 * 15 13 12 18 18 S 1.81000 * 109.46865 * 179.97438 * 17 15 13 19 19 C 1.76205 * 99.99792 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99859 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99831 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00440 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99634 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47236 * 90.00663 * 23 21 19 25 25 H 1.48510 * 109.46956 * 210.00399 * 23 21 19 26 26 H 1.48492 * 109.47503 * 329.99997 * 23 21 19 27 27 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 28 28 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 29 29 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 30 30 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 31 31 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 32 32 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 33 33 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 34 34 H 1.09004 * 109.46922 * 20.30232 * 8 7 6 35 35 H 1.08998 * 109.47326 * 140.30662 * 8 7 6 36 36 H 1.00902 * 110.99870 * 303.95866 * 9 8 7 37 37 H 1.09007 * 109.47399 * 300.00355 * 10 9 8 38 38 H 1.08997 * 109.47119 * 59.99940 * 10 9 8 39 39 H 1.08997 * 109.47000 * 299.99737 * 11 10 9 40 40 H 1.08997 * 109.47025 * 59.99873 * 11 10 9 41 41 H 1.09004 * 109.47406 * 299.99585 * 12 11 10 42 42 H 1.08997 * 109.47506 * 59.99893 * 12 11 10 43 43 H 1.08994 * 109.47475 * 90.00318 * 14 13 12 44 44 H 1.09001 * 109.47325 * 210.00478 * 14 13 12 45 45 H 1.09006 * 109.46938 * 330.00042 * 14 13 12 46 46 H 1.08992 * 109.47299 * 300.00107 * 17 15 13 47 47 H 1.09005 * 109.46800 * 59.99875 * 17 15 13 48 48 H 0.96998 * 120.00540 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 7 1.4789 -2.9565 -1.3645 10 6 1.0177 -4.3506 -1.4034 11 6 0.6313 -4.7202 -2.8369 12 6 0.1504 -6.1721 -2.8772 13 7 -0.2190 -6.5263 -4.2500 14 6 0.7842 -7.0907 -5.1561 15 6 -1.4819 -6.3327 -4.6792 16 8 -2.3125 -5.8658 -3.9289 17 6 -1.8618 -6.6964 -6.0915 18 16 -3.6120 -6.3220 -6.3609 19 6 -3.7787 -6.8306 -8.0397 20 1 -2.9272 -7.2309 -8.5697 21 6 -5.0048 -6.7177 -8.6805 22 7 -6.0428 -6.2302 -8.0343 23 14 -5.1817 -7.2575 -10.4600 24 1 -5.5697 -8.6902 -10.5064 25 1 -6.2284 -6.4394 -11.1237 26 1 -3.8878 -7.0720 -11.1646 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 5.0836 1.7155 1.0262 31 1 5.6089 0.9983 -0.5158 32 1 4.5560 2.4334 -0.5147 33 1 4.4892 -1.3485 -0.0129 34 1 2.6655 -3.2107 0.3503 35 1 0.9990 -2.6673 0.6602 36 1 0.7784 -2.3330 -1.7369 37 1 1.8177 -5.0077 -1.0622 38 1 0.1512 -4.4649 -0.7522 39 1 -0.1686 -4.0633 -3.1785 40 1 1.4982 -4.6060 -3.4878 41 1 0.9500 -6.8294 -2.5355 42 1 -0.7166 -6.2859 -2.2265 43 1 0.7821 -8.1772 -5.0692 44 1 0.5476 -6.8078 -6.1818 45 1 1.7696 -6.7070 -4.8915 46 1 -1.2549 -6.1212 -6.7906 47 1 -1.6894 -7.7609 -6.2513 48 1 -6.8995 -6.1510 -8.4822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754358339.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:26 Heat of formation + Delta-G solvation = 11.777470 kcal Electronic energy + Delta-G solvation = -25833.721168 eV Core-core repulsion = 22050.482147 eV Total energy + Delta-G solvation = -3783.239022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.18573 -40.82018 -37.83057 -36.58345 -34.88782 -34.58097 -33.41511 -31.56181 -30.59725 -30.00963 -27.95921 -27.68480 -27.01623 -25.50835 -24.07478 -22.52755 -21.66056 -20.60526 -20.38790 -19.50796 -18.05823 -17.55910 -17.17457 -16.87497 -16.86565 -16.68127 -16.49370 -15.87508 -15.39018 -15.31536 -15.28945 -14.59944 -14.47118 -14.34095 -14.26014 -14.19264 -14.00768 -13.53240 -13.36402 -13.23433 -13.17279 -13.14634 -13.00190 -12.90959 -12.89126 -12.73474 -12.63073 -12.53481 -12.28161 -11.74036 -11.60810 -11.38057 -11.13744 -10.85256 -10.26060 -10.17712 -9.67088 -9.48291 -9.15425 -8.66776 -8.34065 -6.12488 0.95037 1.27181 1.42900 1.47097 1.57442 1.60402 1.67881 1.73029 2.17825 2.28521 2.99950 3.27637 3.42031 3.61100 3.74519 3.91244 4.07136 4.17080 4.21334 4.25449 4.32074 4.34616 4.42821 4.43758 4.44732 4.48147 4.50180 4.57051 4.68511 4.68945 4.72240 4.75769 4.83936 4.88244 4.97050 4.97424 5.10147 5.19146 5.21787 5.29444 5.42004 5.65151 5.72096 6.14349 6.19948 6.20138 6.31497 6.41037 6.76711 7.06980 7.18570 8.75203 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.016757 B = 0.001680 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.515713 B =16663.170304 C =17358.332993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.065 3.935 3 N -0.343 5.343 4 N -0.383 5.383 5 C 0.094 3.906 6 C 0.077 3.923 7 C -0.252 4.252 8 C 0.145 3.855 9 N -0.692 5.692 10 C 0.070 3.930 11 C -0.121 4.121 12 C 0.118 3.882 13 N -0.612 5.612 14 C 0.071 3.929 15 C 0.528 3.472 16 O -0.566 6.566 17 C -0.124 4.124 18 S -0.154 6.154 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.207 0.793 34 H 0.092 0.908 35 H 0.035 0.965 36 H 0.335 0.665 37 H 0.094 0.906 38 H 0.026 0.974 39 H 0.032 0.968 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.759 6.482 16.656 33.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.101 4.101 3 N -0.167 5.167 4 N -0.165 5.165 5 C -0.046 4.046 6 C -0.070 4.070 7 C -0.264 4.264 8 C 0.015 3.985 9 N -0.322 5.322 10 C -0.060 4.060 11 C -0.160 4.160 12 C -0.005 4.005 13 N -0.345 5.345 14 C -0.071 4.071 15 C 0.315 3.685 16 O -0.444 6.444 17 C -0.275 4.275 18 S 0.073 5.927 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.182 1.182 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.224 0.776 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.152 0.848 37 H 0.112 0.888 38 H 0.045 0.955 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.133 0.867 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 27.243 8.425 17.593 33.506 hybrid contribution -0.615 -1.161 -1.428 1.940 sum 26.628 7.264 16.165 31.986 Atomic orbital electron populations 1.20234 0.86170 1.03715 1.03297 1.22601 0.97611 0.90861 0.99029 1.77238 0.88058 1.23936 1.27512 1.48718 1.05514 1.05704 1.56529 1.22167 0.82952 0.94896 1.04539 1.22867 0.99957 0.84763 0.99442 1.20046 0.92411 0.95902 1.18020 1.20062 0.99584 0.90142 0.88667 1.60585 1.46363 1.03290 1.21985 1.21816 0.99051 0.90104 0.95030 1.21784 1.00606 0.95746 0.97908 1.21527 1.01080 0.96207 0.81685 1.47888 1.08911 1.63368 1.14347 1.22089 0.91955 0.99438 0.93590 1.20149 0.82518 0.77322 0.88465 1.90668 1.50847 1.45518 1.57395 1.23385 1.01621 1.05628 0.96883 1.85572 1.05971 1.84439 1.16717 1.23200 0.99712 1.49048 0.97439 0.89923 1.26135 0.94237 0.94544 1.04223 1.70185 1.01626 1.43724 1.39238 0.84949 0.78578 0.78359 0.76060 1.19223 1.20319 1.18161 0.90402 0.89680 0.90845 0.89511 0.86627 0.89719 0.77611 0.89006 0.94673 0.84804 0.88755 0.95547 0.94922 0.90349 0.86725 0.92139 0.90946 0.91075 0.88025 0.87623 0.87535 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.26 71.24 0.73 -0.61 16 2 C 0.06 1.39 7.22 43.10 0.31 1.70 16 3 N -0.34 -8.13 12.57 -47.38 -0.60 -8.73 16 4 N -0.38 -6.46 4.01 -369.56 -1.48 -7.94 16 5 C 0.09 0.71 11.47 127.77 1.47 2.17 16 6 C 0.08 1.12 11.40 83.54 0.95 2.07 16 7 C -0.25 -4.49 5.61 -20.14 -0.11 -4.60 16 8 C 0.14 2.16 5.89 85.56 0.50 2.67 16 9 N -0.69 -12.11 6.49 -517.95 -3.36 -15.47 16 10 C 0.07 1.13 5.69 86.30 0.49 1.63 16 11 C -0.12 -2.50 5.80 30.59 0.18 -2.32 16 12 C 0.12 2.52 5.41 86.38 0.47 2.99 16 13 N -0.61 -16.11 2.87 -846.74 -2.43 -18.54 16 14 C 0.07 1.23 10.24 127.77 1.31 2.53 16 15 C 0.53 20.25 7.69 87.66 0.67 20.92 16 16 O -0.57 -26.87 15.44 -3.03 -0.05 -26.91 16 17 C -0.12 -5.07 4.71 71.24 0.34 -4.73 16 18 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 19 C -0.55 -31.53 9.50 67.95 0.65 -30.89 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.49 13.22 21.65 0.29 -56.21 16 23 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.29 7.50 -2.39 -0.02 1.27 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.04 0.54 7.60 -2.39 -0.02 0.52 16 36 H 0.33 6.79 8.72 -89.69 -0.78 6.01 16 37 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 1.54 8.07 -2.39 -0.02 1.52 16 42 H 0.06 1.60 7.42 -2.39 -0.02 1.58 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.31 6.44 -2.39 -0.02 1.30 16 45 H 0.10 1.14 8.07 -2.38 -0.02 1.12 16 46 H 0.11 3.93 7.40 -2.40 -0.02 3.92 16 47 H 0.11 3.94 8.11 -2.39 -0.02 3.92 16 48 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -84.98 415.50 1.81 -83.17 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.16 Total: 19.91 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 8.42 Total: -5.25 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -7.59 Total: -106.88 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.91 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -84.98 1.81 -83.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754358339.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.944 kcal (2) G-P(sol) polarization free energy of solvation -84.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds