Wall clock time and date at job start Sat Apr 11 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31924 * 120.17537 * 2 1 4 4 N 1.28285 * 122.32670 * 180.26944 * 3 2 1 5 5 C 1.31911 * 122.51601 * 359.72716 * 4 3 2 6 6 C 1.38505 * 119.97003 * 359.97438 * 5 4 3 7 7 C 1.39734 * 120.17543 * 179.73270 * 2 1 3 8 8 C 1.48139 * 121.13877 * 0.02562 * 7 2 1 9 9 O 1.21517 * 120.00229 * 353.51013 * 8 7 2 10 10 N 1.34777 * 119.99676 * 173.50460 * 8 7 2 11 11 C 1.46503 * 119.99580 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46906 * 180.02562 * 11 10 8 13 13 C 1.38251 * 120.00171 * 255.55430 * 12 11 10 14 14 C 1.38217 * 120.00446 * 179.97438 * 13 12 11 15 15 C 1.38255 * 119.99428 * 359.79190 * 14 13 12 16 16 C 1.38214 * 120.00404 * 0.48420 * 15 14 13 17 17 C 1.38221 * 119.99845 * 75.57443 * 12 11 10 18 18 C 1.50696 * 120.00314 * 359.97438 * 17 12 11 19 19 N 1.46497 * 109.47471 * 173.40003 * 18 17 12 20 20 C 1.46499 * 120.00243 * 274.09256 * 19 18 17 21 21 C 1.36937 * 119.99706 * 94.08901 * 19 18 17 22 22 H 1.07999 * 120.00368 * 18.85827 * 21 19 18 23 23 C 1.38814 * 119.99814 * 198.86283 * 21 19 18 24 24 N 1.31610 * 120.00131 * 14.41042 * 23 21 19 25 25 Si 1.86806 * 119.99737 * 194.41082 * 23 21 19 26 26 H 1.48505 * 109.47075 * 60.00078 * 25 23 21 27 27 H 1.48500 * 109.47013 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47220 * 299.99900 * 25 23 21 29 29 H 1.09000 * 109.47250 * 264.48144 * 1 2 3 30 30 H 1.09004 * 109.46588 * 24.48617 * 1 2 3 31 31 H 1.08994 * 109.47061 * 144.48169 * 1 2 3 32 32 H 1.08005 * 120.01726 * 179.97438 * 5 4 3 33 33 H 1.08004 * 121.08874 * 180.02562 * 6 5 4 34 34 H 0.96997 * 120.00270 * 0.02562 * 10 8 7 35 35 H 1.08993 * 109.47302 * 60.00360 * 11 10 8 36 36 H 1.09003 * 109.46916 * 299.99407 * 11 10 8 37 37 H 1.08002 * 119.99940 * 0.02562 * 13 12 11 38 38 H 1.08002 * 120.00342 * 180.02562 * 14 13 12 39 39 H 1.08004 * 120.00210 * 180.25531 * 15 14 13 40 40 H 1.08002 * 120.00350 * 179.76192 * 16 15 14 41 41 H 1.08999 * 109.47286 * 293.40785 * 18 17 12 42 42 H 1.09006 * 109.46742 * 53.39919 * 18 17 12 43 43 H 1.08992 * 109.47038 * 87.81651 * 20 19 18 44 44 H 1.08999 * 109.46721 * 207.81648 * 20 19 18 45 45 H 1.08995 * 109.46750 * 327.81755 * 20 19 18 46 46 H 0.97001 * 120.00207 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1886 -0.0051 5 6 4.2024 0.1037 -0.0054 6 6 3.6091 -1.1478 0.0004 7 6 2.2093 -1.2080 0.0056 8 6 1.4983 -2.5075 0.0111 9 8 0.2893 -2.5382 0.1297 10 7 2.1923 -3.6559 -0.1155 11 6 1.4890 -4.9411 -0.1107 12 6 2.4865 -6.0601 -0.2653 13 6 2.6083 -6.7150 -1.4767 14 6 3.5235 -7.7410 -1.6187 15 6 4.3201 -8.1094 -0.5505 16 6 4.1944 -7.4585 0.6623 17 6 3.2792 -6.4319 0.8042 18 6 3.1465 -5.7180 2.1247 19 7 3.9715 -6.3927 3.1298 20 6 3.4325 -7.5338 3.8738 21 6 5.2465 -5.9568 3.3737 22 1 5.5447 -4.9636 3.0720 23 6 6.1558 -6.7917 4.0087 24 7 5.9003 -8.0777 4.1225 25 14 7.7422 -6.0896 4.7017 26 1 7.4232 -5.0620 5.7252 27 1 8.5348 -7.1795 5.3255 28 1 8.5292 -5.4693 3.6059 29 1 -0.3634 -0.0988 1.0229 30 1 -0.3632 0.9353 -0.4260 31 1 -0.3633 -0.8364 -0.5970 32 1 5.2788 0.1913 -0.0102 33 1 4.2060 -2.0480 0.0007 34 1 3.1573 -3.6315 -0.2099 35 1 0.7791 -4.9699 -0.9372 36 1 0.9544 -5.0591 0.8319 37 1 1.9890 -6.4244 -2.3124 38 1 3.6190 -8.2524 -2.5652 39 1 5.0382 -8.9084 -0.6625 40 1 4.8140 -7.7489 1.4979 41 1 3.4793 -4.6859 2.0147 42 1 2.1037 -5.7316 2.4418 43 1 3.6214 -8.4520 3.3178 44 1 3.9166 -7.5932 4.8486 45 1 2.3586 -7.4050 4.0087 46 1 6.5355 -8.6610 4.5665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754946584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:38 Heat of formation + Delta-G solvation = 79.617383 kcal Electronic energy + Delta-G solvation = -29214.248529 eV Core-core repulsion = 25298.507315 eV Total energy + Delta-G solvation = -3915.741214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.53547 -39.85845 -38.91237 -35.68043 -35.28732 -33.93536 -33.55645 -32.06707 -31.10312 -29.96414 -28.54430 -26.81925 -26.17025 -25.70450 -24.99113 -23.23442 -22.25924 -21.21176 -20.97758 -20.08059 -18.41753 -17.89374 -16.85059 -16.18689 -16.03706 -15.92978 -15.87162 -15.36358 -15.17431 -14.77454 -14.44394 -14.25916 -13.84999 -13.72111 -13.51813 -13.28840 -13.04762 -13.01235 -12.71792 -12.55480 -12.34244 -12.26965 -11.63644 -11.42831 -11.25565 -10.99351 -10.88597 -10.61537 -10.57552 -10.53779 -10.52725 -10.37660 -10.14119 -10.00552 -9.95804 -9.72658 -9.21717 -8.63683 -8.43144 -8.14489 -6.98648 -5.87677 -3.29937 0.05339 0.59318 1.57677 1.88368 2.54706 2.93384 3.29588 3.34500 3.36629 3.37397 3.74795 4.06118 4.08568 4.22423 4.38464 4.40836 4.48098 4.84210 4.98238 5.12839 5.16712 5.22021 5.30372 5.34907 5.43950 5.48755 5.52495 5.64130 5.67260 5.71442 5.83925 5.90610 6.04660 6.14664 6.21182 6.26729 6.32604 6.44661 6.62506 6.69710 6.80239 7.09108 7.19467 7.29909 7.32510 7.57241 7.59419 7.70079 7.88374 8.24898 8.39446 9.09581 9.71986 10.19763 11.18079 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.003624 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.374052 B = 7724.871766 C = 9411.048439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.124 3.876 3 N -0.248 5.248 4 N -0.224 5.224 5 C 0.030 3.970 6 C -0.077 4.077 7 C -0.133 4.133 8 C 0.562 3.438 9 O -0.521 6.521 10 N -0.708 5.708 11 C 0.168 3.832 12 C -0.131 4.131 13 C -0.113 4.113 14 C -0.139 4.139 15 C -0.119 4.119 16 C -0.085 4.085 17 C -0.076 4.076 18 C 0.182 3.818 19 N -0.598 5.598 20 C 0.160 3.840 21 C -0.256 4.256 22 H 0.068 0.932 23 C 0.004 3.996 24 N -0.907 5.907 25 Si 0.903 3.097 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.284 1.284 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.403 0.597 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.160 0.840 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.019 0.981 44 H 0.063 0.937 45 H -0.006 1.006 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 7.477 -11.410 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.021 4.021 3 N -0.091 5.091 4 N -0.066 5.066 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.147 4.147 8 C 0.347 3.653 9 O -0.398 6.398 10 N -0.360 5.360 11 C 0.046 3.954 12 C -0.132 4.132 13 C -0.132 4.132 14 C -0.158 4.158 15 C -0.137 4.137 16 C -0.102 4.102 17 C -0.080 4.080 18 C 0.054 3.946 19 N -0.320 5.320 20 C 0.015 3.985 21 C -0.385 4.385 22 H 0.086 0.914 23 C -0.194 4.194 24 N -0.552 5.552 25 Si 0.732 3.268 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.210 1.210 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.197 0.803 33 H 0.175 0.825 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.177 0.823 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.012 0.988 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.214 8.950 -11.194 16.045 hybrid contribution 1.824 -1.549 0.245 2.405 sum -5.390 7.401 -10.949 14.273 Atomic orbital electron populations 1.20986 0.86254 1.04403 1.04733 1.23158 0.99704 0.88538 0.90671 1.73090 1.01525 1.24061 1.10463 1.72869 0.99665 1.27886 1.06148 1.24325 1.02921 0.89148 0.97030 1.22765 0.94136 1.00723 0.93086 1.21103 0.94513 0.95727 1.03386 1.17847 0.86948 0.83116 0.77410 1.90751 1.13162 1.86849 1.49088 1.46030 1.11370 1.05514 1.73064 1.20188 0.93005 0.79234 1.02939 1.19606 0.99953 0.99129 0.94547 1.20833 0.99058 0.97042 0.96222 1.20991 0.97641 0.98461 0.98666 1.21313 0.98983 0.99813 0.93611 1.21745 0.96970 0.93580 0.97937 1.21328 0.93850 0.96261 0.96563 1.19890 0.94677 0.94795 0.85219 1.43964 1.12503 1.35792 1.39754 1.20878 0.91537 0.88850 0.97232 1.19142 0.87270 0.96922 1.35195 0.91427 1.24890 0.97819 0.94998 1.01718 1.70049 1.36511 1.02234 1.46367 0.86370 0.83180 0.77993 0.79211 1.21099 1.21579 1.20985 0.89280 0.90644 0.87723 0.80279 0.82540 0.76119 0.90743 0.90084 0.86961 0.87002 0.86783 0.82270 0.92373 0.93119 0.96246 0.91876 0.98780 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 8.99 36.00 0.32 -0.79 16 2 C 0.12 1.50 6.91 -82.00 -0.57 0.94 16 3 N -0.25 -3.32 11.42 33.81 0.39 -2.94 16 4 N -0.22 -2.84 11.48 30.53 0.35 -2.49 16 5 C 0.03 0.29 11.30 -17.42 -0.20 0.09 16 6 C -0.08 -0.73 9.68 -38.78 -0.38 -1.10 16 7 C -0.13 -1.51 5.92 -104.57 -0.62 -2.13 16 8 C 0.56 6.85 7.73 -12.20 -0.09 6.76 16 9 O -0.52 -7.43 13.53 5.35 0.07 -7.36 16 10 N -0.71 -7.98 5.19 -62.33 -0.32 -8.31 16 11 C 0.17 2.06 5.16 -5.19 -0.03 2.04 16 12 C -0.13 -1.84 5.25 -104.62 -0.55 -2.38 16 13 C -0.11 -1.47 9.67 -39.58 -0.38 -1.85 16 14 C -0.14 -1.91 10.05 -39.58 -0.40 -2.31 16 15 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 16 C -0.08 -1.60 9.14 -39.58 -0.36 -1.96 16 17 C -0.08 -1.31 5.87 -104.62 -0.61 -1.92 16 18 C 0.18 3.37 5.07 -5.20 -0.03 3.34 16 19 N -0.60 -13.60 1.75 -182.51 -0.32 -13.92 16 20 C 0.16 3.69 8.75 59.85 0.52 4.21 16 21 C -0.26 -6.36 8.99 -15.06 -0.14 -6.49 16 22 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 23 C 0.00 0.10 5.05 -17.43 -0.09 0.02 16 24 N -0.91 -24.21 10.59 55.49 0.59 -23.62 16 25 Si 0.90 20.50 29.58 -169.99 -5.03 15.47 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.15 5.91 -51.93 -0.31 0.85 16 32 H 0.18 1.12 8.06 -52.48 -0.42 0.69 16 33 H 0.16 1.09 6.66 -52.48 -0.35 0.74 16 34 H 0.40 4.07 6.69 -40.82 -0.27 3.80 16 35 H 0.07 0.85 7.96 -51.93 -0.41 0.43 16 36 H 0.08 1.07 7.08 -51.93 -0.37 0.71 16 37 H 0.11 1.20 8.01 -52.49 -0.42 0.78 16 38 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 40 H 0.16 3.69 5.98 -52.49 -0.31 3.38 16 41 H 0.06 1.03 7.74 -51.93 -0.40 0.63 16 42 H 0.05 0.91 7.11 -51.93 -0.37 0.54 16 43 H 0.02 0.47 7.48 -51.93 -0.39 0.08 16 44 H 0.06 1.60 6.57 -51.93 -0.34 1.26 16 45 H -0.01 -0.13 7.96 -51.93 -0.41 -0.54 16 46 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -29.29 380.14 -8.55 -37.83 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.02 Total: 5.45 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.98 Total: -5.85 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.68 Total: -51.27 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.07 Total: -7.36 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.29 -8.55 -37.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754946584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.450 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds