Wall clock time and date at job start Sat Apr 11 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31924 * 120.17537 * 2 1 4 4 N 1.28285 * 122.32670 * 180.26944 * 3 2 1 5 5 C 1.31911 * 122.51601 * 359.72716 * 4 3 2 6 6 C 1.38505 * 119.97003 * 359.97438 * 5 4 3 7 7 C 1.39734 * 120.17543 * 179.73270 * 2 1 3 8 8 C 1.48139 * 121.13877 * 0.02562 * 7 2 1 9 9 O 1.21517 * 120.00229 * 353.51013 * 8 7 2 10 10 N 1.34777 * 119.99676 * 173.50460 * 8 7 2 11 11 C 1.46503 * 119.99580 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46906 * 180.02562 * 11 10 8 13 13 C 1.38251 * 120.00171 * 255.55430 * 12 11 10 14 14 C 1.38217 * 120.00446 * 179.97438 * 13 12 11 15 15 C 1.38255 * 119.99428 * 359.79190 * 14 13 12 16 16 C 1.38214 * 120.00404 * 0.48420 * 15 14 13 17 17 C 1.38221 * 119.99845 * 75.57443 * 12 11 10 18 18 C 1.50696 * 120.00314 * 359.97438 * 17 12 11 19 19 N 1.46497 * 109.47471 * 173.40003 * 18 17 12 20 20 C 1.46499 * 120.00243 * 274.09256 * 19 18 17 21 21 C 1.36937 * 119.99706 * 94.08901 * 19 18 17 22 22 H 1.07999 * 120.00368 * 18.85827 * 21 19 18 23 23 C 1.38814 * 119.99814 * 198.86283 * 21 19 18 24 24 N 1.31610 * 120.00131 * 14.41042 * 23 21 19 25 25 Si 1.86806 * 119.99737 * 194.41082 * 23 21 19 26 26 H 1.48505 * 109.47075 * 60.00078 * 25 23 21 27 27 H 1.48500 * 109.47013 * 179.97438 * 25 23 21 28 28 H 1.48491 * 109.47220 * 299.99900 * 25 23 21 29 29 H 1.09000 * 109.47250 * 264.48144 * 1 2 3 30 30 H 1.09004 * 109.46588 * 24.48617 * 1 2 3 31 31 H 1.08994 * 109.47061 * 144.48169 * 1 2 3 32 32 H 1.08005 * 120.01726 * 179.97438 * 5 4 3 33 33 H 1.08004 * 121.08874 * 180.02562 * 6 5 4 34 34 H 0.96997 * 120.00270 * 0.02562 * 10 8 7 35 35 H 1.08993 * 109.47302 * 60.00360 * 11 10 8 36 36 H 1.09003 * 109.46916 * 299.99407 * 11 10 8 37 37 H 1.08002 * 119.99940 * 0.02562 * 13 12 11 38 38 H 1.08002 * 120.00342 * 180.02562 * 14 13 12 39 39 H 1.08004 * 120.00210 * 180.25531 * 15 14 13 40 40 H 1.08002 * 120.00350 * 179.76192 * 16 15 14 41 41 H 1.08999 * 109.47286 * 293.40785 * 18 17 12 42 42 H 1.09006 * 109.46742 * 53.39919 * 18 17 12 43 43 H 1.08992 * 109.47038 * 87.81651 * 20 19 18 44 44 H 1.08999 * 109.46721 * 207.81648 * 20 19 18 45 45 H 1.08995 * 109.46750 * 327.81755 * 20 19 18 46 46 H 0.97001 * 120.00207 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1701 1.1405 0.0000 4 7 3.4520 1.1886 -0.0051 5 6 4.2024 0.1037 -0.0054 6 6 3.6091 -1.1478 0.0004 7 6 2.2093 -1.2080 0.0056 8 6 1.4983 -2.5075 0.0111 9 8 0.2893 -2.5382 0.1297 10 7 2.1923 -3.6559 -0.1155 11 6 1.4890 -4.9411 -0.1107 12 6 2.4865 -6.0601 -0.2653 13 6 2.6083 -6.7150 -1.4767 14 6 3.5235 -7.7410 -1.6187 15 6 4.3201 -8.1094 -0.5505 16 6 4.1944 -7.4585 0.6623 17 6 3.2792 -6.4319 0.8042 18 6 3.1465 -5.7180 2.1247 19 7 3.9715 -6.3927 3.1298 20 6 3.4325 -7.5338 3.8738 21 6 5.2465 -5.9568 3.3737 22 1 5.5447 -4.9636 3.0720 23 6 6.1558 -6.7917 4.0087 24 7 5.9003 -8.0777 4.1225 25 14 7.7422 -6.0896 4.7017 26 1 7.4232 -5.0620 5.7252 27 1 8.5348 -7.1795 5.3255 28 1 8.5292 -5.4693 3.6059 29 1 -0.3634 -0.0988 1.0229 30 1 -0.3632 0.9353 -0.4260 31 1 -0.3633 -0.8364 -0.5970 32 1 5.2788 0.1913 -0.0102 33 1 4.2060 -2.0480 0.0007 34 1 3.1573 -3.6315 -0.2099 35 1 0.7791 -4.9699 -0.9372 36 1 0.9544 -5.0591 0.8319 37 1 1.9890 -6.4244 -2.3124 38 1 3.6190 -8.2524 -2.5652 39 1 5.0382 -8.9084 -0.6625 40 1 4.8140 -7.7489 1.4979 41 1 3.4793 -4.6859 2.0147 42 1 2.1037 -5.7316 2.4418 43 1 3.6214 -8.4520 3.3178 44 1 3.9166 -7.5932 4.8486 45 1 2.3586 -7.4050 4.0087 46 1 6.5355 -8.6610 4.5665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754946584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:37 Heat of formation + Delta-G solvation = 63.399679 kcal Electronic energy + Delta-G solvation = -29214.951781 eV Core-core repulsion = 25298.507315 eV Total energy + Delta-G solvation = -3916.444466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.39664 -40.91269 -40.03794 -37.37668 -36.28139 -34.80768 -34.42624 -33.70240 -32.26872 -31.45680 -29.40226 -28.13743 -27.75784 -27.16010 -25.97537 -24.06205 -23.83668 -22.31524 -22.09819 -21.41784 -19.31965 -18.77884 -18.71330 -17.36967 -17.05487 -16.91370 -16.73324 -16.66739 -16.24913 -16.04400 -15.59017 -15.47161 -15.41445 -14.80145 -14.74748 -14.56046 -14.33012 -14.01944 -13.85096 -13.61446 -13.51852 -13.25364 -13.20991 -13.01016 -12.79262 -12.56831 -12.27440 -12.10120 -12.03789 -11.96929 -11.78588 -11.61623 -11.50366 -11.37841 -10.86747 -10.62737 -10.56407 -10.16337 -9.61904 -9.38461 -8.85112 -7.81463 -5.24151 -0.79129 -0.20559 0.40527 0.67896 1.47837 1.51197 1.55792 1.63422 1.97908 2.49374 2.52615 2.93574 3.01268 3.26991 3.31649 3.34703 3.59950 3.65419 3.69819 3.82380 4.09548 4.21135 4.23928 4.39403 4.41608 4.42861 4.50198 4.62773 4.70799 4.73670 4.77884 4.83604 4.85244 4.91618 5.04522 5.06732 5.18935 5.23554 5.34954 5.36118 5.39278 5.60316 5.65929 5.72716 5.85955 5.99120 6.27079 6.33387 6.36004 6.96937 7.16691 7.54826 7.87739 8.31626 9.23110 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.003624 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.374052 B = 7724.871766 C = 9411.048439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.113 3.887 3 N -0.275 5.275 4 N -0.253 5.253 5 C 0.035 3.965 6 C -0.065 4.065 7 C -0.144 4.144 8 C 0.566 3.434 9 O -0.544 6.544 10 N -0.701 5.701 11 C 0.173 3.827 12 C -0.117 4.117 13 C -0.102 4.102 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.114 4.114 17 C -0.088 4.088 18 C 0.184 3.816 19 N -0.609 5.609 20 C 0.175 3.825 21 C -0.253 4.253 22 H 0.074 0.926 23 C -0.046 4.046 24 N -0.934 5.934 25 Si 0.958 3.042 26 H -0.283 1.283 27 H -0.300 1.300 28 H -0.275 1.275 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.215 0.785 33 H 0.185 0.815 34 H 0.410 0.590 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.067 0.933 42 H 0.058 0.942 43 H -0.003 1.003 44 H 0.034 0.966 45 H 0.016 0.984 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 8.355 -13.688 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.032 4.032 3 N -0.117 5.117 4 N -0.093 5.093 5 C -0.130 4.130 6 C -0.094 4.094 7 C -0.158 4.158 8 C 0.352 3.648 9 O -0.423 6.423 10 N -0.352 5.352 11 C 0.051 3.949 12 C -0.118 4.118 13 C -0.120 4.120 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.132 4.132 17 C -0.091 4.091 18 C 0.058 3.942 19 N -0.332 5.332 20 C 0.030 3.970 21 C -0.383 4.383 22 H 0.092 0.908 23 C -0.241 4.241 24 N -0.581 5.581 25 Si 0.787 3.213 26 H -0.210 1.210 27 H -0.226 1.226 28 H -0.201 1.201 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.232 0.768 33 H 0.202 0.798 34 H 0.247 0.753 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.015 0.985 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.437 9.868 -13.497 18.299 hybrid contribution 1.863 -1.833 0.866 2.753 sum -5.573 8.035 -12.630 15.973 Atomic orbital electron populations 1.20945 0.85673 1.04678 1.04572 1.23354 1.00308 0.88731 0.90842 1.73035 1.02154 1.24810 1.11733 1.72784 0.99705 1.29553 1.07279 1.24890 1.04325 0.88442 0.95307 1.23097 0.93457 1.01748 0.91132 1.21085 0.95429 0.94977 1.04329 1.17899 0.86644 0.83421 0.76879 1.90746 1.14187 1.87155 1.50189 1.45903 1.11682 1.04959 1.72691 1.20129 0.92635 0.78896 1.03236 1.19638 0.98969 0.99255 0.93915 1.21238 0.98431 0.95746 0.96595 1.21320 0.96306 0.98140 0.98908 1.21389 0.99910 0.99933 0.93469 1.21388 0.98188 0.95843 0.97825 1.20993 0.94996 0.96390 0.96756 1.19957 0.94225 0.94886 0.85138 1.44085 1.12362 1.35611 1.41114 1.20577 0.92372 0.88536 0.95481 1.19429 0.88007 0.96905 1.33916 0.90814 1.25519 1.00498 0.95266 1.02851 1.70213 1.37144 1.03178 1.47570 0.85483 0.80314 0.76909 0.78574 1.20996 1.22645 1.20058 0.89455 0.89702 0.88196 0.76829 0.79821 0.75272 0.88978 0.91059 0.83351 0.83746 0.86527 0.87201 0.91462 0.92448 0.98494 0.94685 0.96530 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 8.99 71.23 0.64 -1.42 16 2 C 0.11 2.64 6.91 42.91 0.30 2.94 16 3 N -0.28 -7.18 11.42 -46.95 -0.54 -7.71 16 4 N -0.25 -6.08 11.48 -57.33 -0.66 -6.74 16 5 C 0.03 0.58 11.30 84.74 0.96 1.54 16 6 C -0.06 -1.03 9.68 22.79 0.22 -0.81 16 7 C -0.14 -3.00 5.92 -19.83 -0.12 -3.11 16 8 C 0.57 12.57 7.73 86.87 0.67 13.24 16 9 O -0.54 -14.61 13.53 -3.77 -0.05 -14.67 16 10 N -0.70 -13.69 5.19 -469.42 -2.44 -16.13 16 11 C 0.17 3.70 5.16 85.63 0.44 4.14 16 12 C -0.12 -2.91 5.25 -19.86 -0.10 -3.01 16 13 C -0.10 -2.20 9.67 22.27 0.22 -1.98 16 14 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 15 C -0.13 -4.00 10.05 22.27 0.22 -3.78 16 16 C -0.11 -4.35 9.14 22.27 0.20 -4.15 16 17 C -0.09 -2.92 5.87 -19.86 -0.12 -3.03 16 18 C 0.18 6.66 5.07 85.63 0.43 7.09 16 19 N -0.61 -28.04 1.75 -731.34 -1.28 -29.32 16 20 C 0.18 8.36 8.75 127.77 1.12 9.48 16 21 C -0.25 -12.65 8.99 84.03 0.76 -11.90 16 22 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 23 C -0.05 -2.42 5.05 84.86 0.43 -1.99 16 24 N -0.93 -51.95 10.59 21.65 0.23 -51.72 16 25 Si 0.96 42.67 29.58 68.60 2.03 44.70 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.10 2.14 5.91 -2.39 -0.01 2.12 16 32 H 0.22 1.88 8.06 -2.91 -0.02 1.85 16 33 H 0.18 1.83 6.66 -2.91 -0.02 1.81 16 34 H 0.41 6.87 6.69 -92.71 -0.62 6.25 16 35 H 0.09 1.71 7.96 -2.39 -0.02 1.69 16 36 H 0.07 1.71 7.08 -2.39 -0.02 1.70 16 37 H 0.15 2.25 8.01 -2.91 -0.02 2.22 16 38 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 39 H 0.12 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.11 5.36 5.98 -2.91 -0.02 5.34 16 41 H 0.07 2.27 7.74 -2.39 -0.02 2.25 16 42 H 0.06 1.98 7.11 -2.38 -0.02 1.96 16 43 H 0.00 -0.17 7.48 -2.39 -0.02 -0.18 16 44 H 0.03 1.83 6.57 -2.39 -0.02 1.82 16 45 H 0.02 0.69 7.96 -2.39 -0.02 0.67 16 46 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -66.19 380.14 4.19 -62.00 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.40 Total: 19.17 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 6.49 Total: 0.42 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.68 Total: -111.62 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: -0.05 Total: -14.67 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.19 4.19 -62.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754946584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.400 kcal (2) G-P(sol) polarization free energy of solvation -66.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds