Wall clock time and date at job start Sat Apr 11 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34123 * 125.98651 * 2 1 4 4 C 1.30508 * 109.25408 * 180.02562 * 3 2 1 5 5 N 1.35046 * 108.69758 * 359.76479 * 4 3 2 6 6 H 0.96995 * 126.39884 * 180.26287 * 5 4 3 7 7 C 1.34666 * 125.98586 * 180.02562 * 2 1 3 8 8 C 1.50695 * 126.59694 * 359.96390 * 7 2 1 9 9 C 1.50696 * 109.47163 * 84.99680 * 8 7 2 10 10 O 1.21284 * 120.00096 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99838 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47289 * 179.97438 * 12 11 9 14 14 C 1.38250 * 120.01755 * 269.72364 * 13 12 11 15 15 C 1.38147 * 119.96014 * 179.79201 * 14 13 12 16 16 C 1.38442 * 120.10296 * 0.44142 * 15 14 13 17 17 C 1.38066 * 119.93307 * 359.81316 * 16 15 14 18 18 C 1.38144 * 120.01690 * 90.00211 * 13 12 11 19 19 C 1.50784 * 108.86318 * 179.97438 * 17 16 15 20 20 N 1.46634 * 107.70043 * 359.97438 * 19 17 16 21 21 C 1.36935 * 126.56467 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99898 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00325 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99642 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00359 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46701 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47313 * 119.99638 * 25 23 21 28 28 H 1.48498 * 109.47194 * 240.00130 * 25 23 21 29 29 C 1.46642 * 106.87235 * 0.02562 * 20 19 17 30 30 H 1.09005 * 109.47407 * 269.99918 * 1 2 3 31 31 H 1.08998 * 109.47277 * 29.99839 * 1 2 3 32 32 H 1.08997 * 109.47682 * 150.00224 * 1 2 3 33 33 H 1.08000 * 125.65142 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.46897 * 324.99889 * 8 7 2 35 35 H 1.09001 * 109.47545 * 205.00211 * 8 7 2 36 36 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 38 38 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 39 39 H 1.08003 * 120.02251 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.94737 * 180.23394 * 15 14 13 41 41 H 1.07997 * 119.95005 * 359.97184 * 18 13 12 42 42 H 1.08993 * 109.81156 * 119.54648 * 19 17 16 43 43 H 1.09006 * 109.80666 * 240.45077 * 19 17 16 44 44 H 0.97000 * 119.99902 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.80625 * 119.55040 * 29 20 19 46 46 H 1.08997 * 109.81556 * 240.38145 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5912 -0.6401 0.0043 6 1 4.3912 -1.1886 0.0087 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5275 -0.0004 9 6 1.5779 -2.9696 -1.4156 10 8 1.7371 -2.1936 -2.3340 11 7 1.1602 -4.2273 -1.6608 12 6 0.8989 -4.6574 -3.0367 13 6 0.4476 -6.0953 -3.0365 14 6 1.3779 -7.1120 -3.1467 15 6 0.9633 -8.4298 -3.1421 16 6 -0.3832 -8.7338 -3.0365 17 6 -1.3126 -7.7182 -2.9318 18 6 -0.8962 -6.3978 -2.9321 19 6 -2.6891 -8.3254 -2.8322 20 7 -2.5382 -9.7831 -2.8838 21 6 -3.5444 -10.7100 -2.8244 22 1 -4.5707 -10.3875 -2.7295 23 6 -3.2452 -12.0641 -2.8852 24 7 -1.9942 -12.4571 -2.9993 25 14 -4.6177 -13.3286 -2.8034 26 1 -5.9238 -12.6337 -2.6750 27 1 -4.6115 -14.1467 -4.0426 28 1 -4.4090 -14.2104 -1.6270 29 6 -1.1035 -10.0581 -3.0112 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 4.4004 1.3687 -0.0003 34 1 0.9355 -2.6222 0.5896 35 1 2.6273 -3.1531 0.4335 36 1 1.0332 -4.8481 -0.9263 37 1 0.1193 -4.0315 -3.4711 38 1 1.8109 -4.5632 -3.6262 39 1 2.4284 -6.8764 -3.2325 40 1 1.6905 -9.2241 -3.2243 41 1 -1.6230 -5.6033 -2.8501 42 1 -3.1538 -8.0349 -1.8901 43 1 -3.3030 -7.9880 -3.6674 44 1 -1.7851 -13.4033 -3.0421 45 1 -0.7634 -10.6478 -2.1599 46 1 -0.9121 -10.6013 -3.9367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755101378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:41 Heat of formation + Delta-G solvation = 72.977815 kcal Electronic energy + Delta-G solvation = -27667.076501 eV Core-core repulsion = 23751.047374 eV Total energy + Delta-G solvation = -3916.029127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -42.38734 -40.05304 -39.39127 -36.43886 -34.57810 -33.36672 -33.09462 -32.28320 -31.24587 -29.92847 -29.16455 -27.48130 -26.28088 -25.78542 -24.35348 -22.12968 -21.99332 -20.95866 -20.48380 -20.23262 -19.75612 -18.11950 -17.43019 -17.07332 -16.17488 -15.90522 -15.55102 -15.32541 -14.97717 -14.58455 -14.52504 -14.36203 -14.23131 -13.73303 -13.58506 -13.34225 -13.07895 -13.06537 -12.98463 -12.83878 -12.33137 -12.20587 -12.00019 -11.90280 -11.72656 -11.60724 -11.12700 -10.89808 -10.53797 -10.30955 -10.25317 -10.20695 -10.15663 -10.03618 -9.85295 -9.27602 -9.01380 -8.50535 -8.46277 -8.07912 -6.90990 -5.86923 -3.20233 1.47528 1.67832 1.72362 2.38742 2.76992 2.86718 3.20443 3.33549 3.39013 3.41663 4.07546 4.21603 4.36180 4.41433 4.57178 4.60448 4.74872 4.91847 4.97353 5.04914 5.07816 5.18685 5.25482 5.38341 5.44416 5.52002 5.52806 5.60671 5.70068 5.79296 5.80110 5.89881 5.95979 6.04715 6.18473 6.43541 6.48156 6.50243 6.50709 6.70065 6.72070 6.99236 7.08530 7.26020 7.26782 7.30949 7.47254 7.63909 7.82023 7.98800 8.07781 9.06091 9.65951 10.32612 11.27295 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.001775 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.875255 B =15772.729615 C =16266.772620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.021 3.979 3 N -0.492 5.492 4 C 0.189 3.811 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.008 4.008 8 C -0.066 4.066 9 C 0.509 3.491 10 O -0.530 6.530 11 N -0.724 5.724 12 C 0.171 3.829 13 C -0.133 4.133 14 C -0.104 4.104 15 C -0.112 4.112 16 C -0.080 4.080 17 C -0.106 4.106 18 C -0.083 4.083 19 C 0.175 3.825 20 N -0.601 5.601 21 C -0.226 4.226 22 H 0.085 0.915 23 C -0.007 4.007 24 N -0.923 5.923 25 Si 0.918 3.082 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.289 1.289 29 C 0.205 3.795 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.208 0.792 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.255 0.745 45 H 0.065 0.935 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.387 19.664 7.044 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 N -0.212 5.212 4 C -0.095 4.095 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.124 4.124 8 C -0.107 4.107 9 C 0.295 3.705 10 O -0.406 6.406 11 N -0.376 5.376 12 C 0.048 3.952 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.131 4.131 16 C -0.081 4.081 17 C -0.107 4.107 18 C -0.102 4.102 19 C 0.049 3.951 20 N -0.327 5.327 21 C -0.353 4.353 22 H 0.102 0.898 23 C -0.204 4.204 24 N -0.570 5.570 25 Si 0.748 3.252 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.216 1.216 29 C 0.080 3.920 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.224 0.776 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.119 20.827 6.357 24.921 hybrid contribution 0.220 -2.160 0.297 2.191 sum 12.339 18.667 6.655 23.345 Atomic orbital electron populations 1.20047 0.87771 1.02937 1.01928 1.20447 0.96420 0.87788 1.06126 1.70178 1.00590 1.30672 1.19782 1.24878 0.97363 0.81830 1.05443 1.43121 1.07906 1.08731 1.56877 0.74475 1.20137 0.84137 0.95328 1.12755 1.20033 1.04200 0.90925 0.95527 1.20509 0.77227 0.81792 0.91022 1.90754 1.51098 1.52692 1.46071 1.46173 1.68669 1.12923 1.09847 1.20096 1.01020 0.91323 0.82731 1.19452 0.93491 0.93853 1.06519 1.20810 0.98555 0.92204 1.00676 1.20500 0.94689 0.96061 1.01834 1.21555 0.93347 0.98920 0.94295 1.20737 0.97426 0.93011 0.99496 1.20306 0.94674 0.95015 1.00223 1.19713 0.90811 0.85860 0.98666 1.43964 1.02551 0.99157 1.87041 1.19032 0.86820 0.85543 1.43935 0.89760 1.24844 0.96827 0.96952 1.01766 1.69931 1.16040 1.14755 1.56300 0.85946 0.80640 0.81258 0.77330 1.20332 1.21592 1.21608 1.19747 0.82726 0.87741 1.01745 0.91386 0.91022 0.91518 0.77572 0.86414 0.88112 0.76199 0.90777 0.90971 0.86417 0.86128 0.86482 0.94559 0.94545 0.93497 0.91765 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.13 36.01 0.36 -0.28 16 2 C 0.02 0.24 7.09 -82.86 -0.59 -0.34 16 3 N -0.49 -5.92 11.25 -10.87 -0.12 -6.04 16 4 C 0.19 1.59 13.04 -90.37 -1.18 0.41 16 5 N -0.56 -4.16 6.15 -10.30 -0.06 -4.22 16 6 H 0.42 1.70 8.96 -40.82 -0.37 1.33 16 7 C -0.01 -0.08 5.73 -81.60 -0.47 -0.54 16 8 C -0.07 -0.45 5.81 -29.04 -0.17 -0.62 16 9 C 0.51 5.07 7.82 -10.99 -0.09 4.98 16 10 O -0.53 -7.62 16.03 5.55 0.09 -7.53 16 11 N -0.72 -6.49 5.55 -61.47 -0.34 -6.83 16 12 C 0.17 1.84 5.80 -5.19 -0.03 1.81 16 13 C -0.13 -1.66 5.25 -104.65 -0.55 -2.21 16 14 C -0.10 -1.34 9.70 -39.61 -0.38 -1.73 16 15 C -0.11 -1.76 10.05 -39.54 -0.40 -2.16 16 16 C -0.08 -1.54 6.22 -104.57 -0.65 -2.19 16 17 C -0.11 -1.92 6.22 -104.57 -0.65 -2.57 16 18 C -0.08 -1.20 9.70 -39.54 -0.38 -1.58 16 19 C 0.18 3.62 7.25 -5.08 -0.04 3.59 16 20 N -0.60 -15.17 3.41 -175.67 -0.60 -15.77 16 21 C -0.23 -6.13 10.32 -15.06 -0.16 -6.29 16 22 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 24 N -0.92 -26.23 10.44 55.49 0.58 -25.65 16 25 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 C 0.20 4.88 5.40 -5.08 -0.03 4.86 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 33 H 0.21 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.12 0.59 8.03 -51.93 -0.42 0.17 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.40 2.90 8.46 -40.82 -0.35 2.55 16 37 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.06 1.67 7.49 -51.93 -0.39 1.29 16 46 H 0.06 1.69 7.49 -51.93 -0.39 1.30 16 LS Contribution 388.31 15.07 5.85 5.85 Total: -1.00 -35.33 388.31 -11.62 -46.95 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.51 Total: 1.98 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -5.48 Total: -5.15 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: -0.55 Total: -58.51 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.09 Total: -7.53 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.33 -11.62 -46.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755101378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.930 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds