Wall clock time and date at job start Sat Apr 11 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34123 * 125.98651 * 2 1 4 4 C 1.30508 * 109.25408 * 180.02562 * 3 2 1 5 5 N 1.35046 * 108.69758 * 359.76479 * 4 3 2 6 6 H 0.96995 * 126.39884 * 180.26287 * 5 4 3 7 7 C 1.34666 * 125.98586 * 180.02562 * 2 1 3 8 8 C 1.50695 * 126.59694 * 359.96390 * 7 2 1 9 9 C 1.50696 * 109.47163 * 84.99680 * 8 7 2 10 10 O 1.21284 * 120.00096 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99838 * 180.02562 * 9 8 7 12 12 C 1.46506 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47289 * 179.97438 * 12 11 9 14 14 C 1.38250 * 120.01755 * 269.72364 * 13 12 11 15 15 C 1.38147 * 119.96014 * 179.79201 * 14 13 12 16 16 C 1.38442 * 120.10296 * 0.44142 * 15 14 13 17 17 C 1.38066 * 119.93307 * 359.81316 * 16 15 14 18 18 C 1.38144 * 120.01690 * 90.00211 * 13 12 11 19 19 C 1.50784 * 108.86318 * 179.97438 * 17 16 15 20 20 N 1.46634 * 107.70043 * 359.97438 * 19 17 16 21 21 C 1.36935 * 126.56467 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99898 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00325 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99642 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00359 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46701 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47313 * 119.99638 * 25 23 21 28 28 H 1.48498 * 109.47194 * 240.00130 * 25 23 21 29 29 C 1.46642 * 106.87235 * 0.02562 * 20 19 17 30 30 H 1.09005 * 109.47407 * 269.99918 * 1 2 3 31 31 H 1.08998 * 109.47277 * 29.99839 * 1 2 3 32 32 H 1.08997 * 109.47682 * 150.00224 * 1 2 3 33 33 H 1.08000 * 125.65142 * 180.02562 * 4 3 2 34 34 H 1.09004 * 109.46897 * 324.99889 * 8 7 2 35 35 H 1.09001 * 109.47545 * 205.00211 * 8 7 2 36 36 H 0.97001 * 120.00676 * 359.97438 * 11 9 8 37 37 H 1.09001 * 109.47060 * 300.00359 * 12 11 9 38 38 H 1.09004 * 109.47073 * 59.99848 * 12 11 9 39 39 H 1.08003 * 120.02251 * 0.02562 * 14 13 12 40 40 H 1.08000 * 119.94737 * 180.23394 * 15 14 13 41 41 H 1.07997 * 119.95005 * 359.97184 * 18 13 12 42 42 H 1.08993 * 109.81156 * 119.54648 * 19 17 16 43 43 H 1.09006 * 109.80666 * 240.45077 * 19 17 16 44 44 H 0.97000 * 119.99902 * 180.02562 * 24 23 21 45 45 H 1.09003 * 109.80625 * 119.55040 * 29 20 19 46 46 H 1.08997 * 109.81556 * 240.38145 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5912 -0.6401 0.0043 6 1 4.3912 -1.1886 0.0087 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5275 -0.0004 9 6 1.5779 -2.9696 -1.4156 10 8 1.7371 -2.1936 -2.3340 11 7 1.1602 -4.2273 -1.6608 12 6 0.8989 -4.6574 -3.0367 13 6 0.4476 -6.0953 -3.0365 14 6 1.3779 -7.1120 -3.1467 15 6 0.9633 -8.4298 -3.1421 16 6 -0.3832 -8.7338 -3.0365 17 6 -1.3126 -7.7182 -2.9318 18 6 -0.8962 -6.3978 -2.9321 19 6 -2.6891 -8.3254 -2.8322 20 7 -2.5382 -9.7831 -2.8838 21 6 -3.5444 -10.7100 -2.8244 22 1 -4.5707 -10.3875 -2.7295 23 6 -3.2452 -12.0641 -2.8852 24 7 -1.9942 -12.4571 -2.9993 25 14 -4.6177 -13.3286 -2.8034 26 1 -5.9238 -12.6337 -2.6750 27 1 -4.6115 -14.1467 -4.0426 28 1 -4.4090 -14.2104 -1.6270 29 6 -1.1035 -10.0581 -3.0112 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 4.4004 1.3687 -0.0003 34 1 0.9355 -2.6222 0.5896 35 1 2.6273 -3.1531 0.4335 36 1 1.0332 -4.8481 -0.9263 37 1 0.1193 -4.0315 -3.4711 38 1 1.8109 -4.5632 -3.6262 39 1 2.4284 -6.8764 -3.2325 40 1 1.6905 -9.2241 -3.2243 41 1 -1.6230 -5.6033 -2.8501 42 1 -3.1538 -8.0349 -1.8901 43 1 -3.3030 -7.9880 -3.6674 44 1 -1.7851 -13.4033 -3.0421 45 1 -0.7634 -10.6478 -2.1599 46 1 -0.9121 -10.6013 -3.9367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755101378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:40 Heat of formation + Delta-G solvation = 50.082655 kcal Electronic energy + Delta-G solvation = -27668.069310 eV Core-core repulsion = 23751.047374 eV Total energy + Delta-G solvation = -3917.021935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.01459 -41.20933 -40.40967 -37.87345 -35.70703 -34.13134 -34.00912 -33.68443 -32.45999 -31.42928 -30.03595 -28.79973 -27.70150 -26.84074 -25.59620 -23.59532 -22.67247 -22.09889 -21.70671 -21.42654 -20.46628 -19.00080 -18.75478 -18.14942 -17.22986 -16.98018 -16.67348 -16.21255 -16.10072 -16.04975 -15.94006 -15.50507 -15.35341 -14.92828 -14.52837 -14.46853 -14.20023 -13.79868 -13.66274 -13.61758 -13.49776 -13.46700 -13.26984 -13.04972 -13.04098 -13.02911 -12.90541 -12.72597 -12.05465 -11.97928 -11.83083 -11.63198 -11.12437 -10.92786 -10.89915 -10.73289 -10.08102 -9.71227 -9.58454 -9.12832 -8.84670 -7.94133 -5.30758 0.27669 0.46130 1.06335 1.46155 1.47434 1.58168 1.66518 2.11763 2.26474 2.43982 2.44968 2.89839 3.28608 3.47555 3.54364 3.65343 3.80330 3.85889 3.97753 4.08889 4.12074 4.16436 4.35596 4.43376 4.49096 4.51861 4.61162 4.66849 4.75895 4.80006 4.84717 4.87132 4.98536 5.02831 5.11229 5.18798 5.27886 5.29529 5.32582 5.40945 5.46447 5.52437 5.57791 5.84890 5.87448 6.05644 6.09736 6.56531 6.63828 7.00348 7.18148 7.27843 7.65199 8.32837 9.19224 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028194 B = 0.001775 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.875255 B =15772.729615 C =16266.772620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.016 4.016 3 N -0.541 5.541 4 C 0.190 3.810 5 N -0.554 5.554 6 H 0.434 0.566 7 C -0.012 4.012 8 C -0.059 4.059 9 C 0.514 3.486 10 O -0.577 6.577 11 N -0.713 5.713 12 C 0.177 3.823 13 C -0.107 4.107 14 C -0.087 4.087 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.117 4.117 18 C -0.075 4.075 19 C 0.171 3.829 20 N -0.625 5.625 21 C -0.243 4.243 22 H 0.091 0.909 23 C -0.065 4.065 24 N -0.953 5.953 25 Si 0.987 3.013 26 H -0.263 1.263 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.220 3.780 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.242 0.758 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.416 0.584 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.155 0.845 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.250 0.750 45 H 0.025 0.975 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.699 21.328 7.923 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.145 4.145 3 N -0.262 5.262 4 C -0.094 4.094 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.128 4.128 8 C -0.100 4.100 9 C 0.301 3.699 10 O -0.456 6.456 11 N -0.366 5.366 12 C 0.053 3.947 13 C -0.107 4.107 14 C -0.106 4.106 15 C -0.130 4.130 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.094 4.094 19 C 0.046 3.954 20 N -0.351 5.351 21 C -0.371 4.371 22 H 0.109 0.891 23 C -0.258 4.258 24 N -0.601 5.601 25 Si 0.814 3.186 26 H -0.187 1.187 27 H -0.218 1.218 28 H -0.216 1.216 29 C 0.095 3.905 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.258 0.742 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.252 0.748 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.173 0.827 40 H 0.148 0.852 41 H 0.158 0.842 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 13.433 22.489 7.262 27.183 hybrid contribution -0.100 -2.530 0.015 2.532 sum 13.333 19.959 7.277 25.081 Atomic orbital electron populations 1.20036 0.87431 1.02345 1.02594 1.20839 0.97291 0.88610 1.07743 1.70130 1.02290 1.31959 1.21777 1.25579 0.97419 0.82717 1.03693 1.43132 1.08111 1.08667 1.55941 0.72558 1.20441 0.84534 0.96046 1.11805 1.20125 1.06313 0.89849 0.93701 1.20950 0.76014 0.81242 0.91719 1.90750 1.53212 1.53915 1.47744 1.46012 1.68102 1.13017 1.09465 1.19976 1.01227 0.89562 0.83896 1.19631 0.92543 0.94914 1.03661 1.21146 1.00471 0.90609 0.98330 1.20685 0.93166 0.97912 1.01201 1.21182 0.95159 0.96485 0.98459 1.20573 0.95407 0.94314 1.01442 1.20504 0.96113 0.93689 0.99088 1.19814 0.93021 0.83665 0.98907 1.44265 1.02829 1.01129 1.86878 1.19445 0.87762 0.86462 1.43442 0.89148 1.25756 0.99176 0.98937 1.01936 1.70161 1.17966 1.14611 1.57356 0.84887 0.78429 0.78443 0.76805 1.18686 1.21783 1.21641 1.19281 0.82975 0.90008 0.98193 0.90083 0.92390 0.91253 0.74167 0.84331 0.84712 0.74765 0.91013 0.90355 0.82742 0.85218 0.84172 0.93825 0.94275 0.94038 0.95700 0.96003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.13 71.24 0.72 -0.48 16 2 C -0.02 -0.35 7.09 41.39 0.29 -0.06 16 3 N -0.54 -12.63 11.25 -188.31 -2.12 -14.75 16 4 C 0.19 2.85 13.04 180.26 2.35 5.20 16 5 N -0.55 -6.75 6.15 -186.49 -1.15 -7.90 16 6 H 0.43 2.13 8.96 -92.71 -0.83 1.29 16 7 C -0.01 -0.19 5.73 40.95 0.23 0.04 16 8 C -0.06 -0.58 5.81 29.10 0.17 -0.41 16 9 C 0.51 8.46 7.82 87.66 0.69 9.15 16 10 O -0.58 -15.24 16.03 -3.04 -0.05 -15.29 16 11 N -0.71 -9.77 5.55 -466.77 -2.59 -12.36 16 12 C 0.18 3.07 5.80 85.63 0.50 3.57 16 13 C -0.11 -2.26 5.25 -19.88 -0.10 -2.37 16 14 C -0.09 -1.92 9.70 22.25 0.22 -1.70 16 15 C -0.11 -3.32 10.05 22.30 0.22 -3.10 16 16 C -0.11 -4.35 6.22 -19.83 -0.12 -4.48 16 17 C -0.12 -4.15 6.22 -19.83 -0.12 -4.28 16 18 C -0.08 -1.95 9.70 22.30 0.22 -1.73 16 19 C 0.17 7.17 7.25 85.63 0.62 7.79 16 20 N -0.62 -32.94 3.41 -709.69 -2.42 -35.35 16 21 C -0.24 -13.64 10.32 84.03 0.87 -12.77 16 22 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 23 C -0.06 -3.67 5.49 84.86 0.47 -3.21 16 24 N -0.95 -56.94 10.44 21.65 0.23 -56.71 16 25 Si 0.99 45.10 29.55 68.60 2.03 47.12 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 28 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 29 C 0.22 11.20 5.40 85.63 0.46 11.66 16 30 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.16 7.89 -2.39 -0.02 1.14 16 33 H 0.24 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.14 0.83 8.03 -2.38 -0.02 0.81 16 35 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.42 3.97 8.46 -92.71 -0.78 3.19 16 37 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 38 H 0.08 1.36 8.08 -2.38 -0.02 1.34 16 39 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.03 1.41 7.49 -2.39 -0.02 1.39 16 46 H 0.02 1.26 7.49 -2.39 -0.02 1.24 16 Total: -1.00 -82.49 388.31 1.01 -81.48 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -0.59 Total: 10.93 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 7.67 Total: 2.82 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -8.05 Total: -127.07 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.05 Total: -15.29 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -82.49 1.01 -81.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755101378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.564 kcal (2) G-P(sol) polarization free energy of solvation -82.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds