Wall clock time and date at job start Sat Apr 11 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30887 * 122.98146 * 2 1 4 4 C 1.30229 * 117.25763 * 179.97438 * 3 2 1 5 5 N 1.37845 * 124.74452 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99984 * 0.02562 * 5 4 3 7 7 C 1.46502 * 119.99954 * 180.02562 * 5 4 3 8 8 S 1.70919 * 110.50992 * 0.26685 * 4 3 2 9 9 C 1.36703 * 122.98510 * 179.97438 * 2 1 3 10 10 C 1.46218 * 126.11065 * 0.02562 * 9 2 1 11 11 O 1.21750 * 120.00307 * 0.02562 * 10 9 2 12 12 N 1.34783 * 119.99996 * 179.97438 * 10 9 2 13 13 C 1.46502 * 120.00132 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46604 * 35.00700 * 13 12 10 15 15 C 1.53000 * 109.47463 * 275.00520 * 13 12 10 16 16 C 1.52996 * 109.47072 * 155.00127 * 13 12 10 17 17 C 1.53002 * 109.47029 * 295.00184 * 16 13 12 18 18 C 1.53006 * 109.46991 * 179.97438 * 17 16 13 19 19 N 1.46489 * 109.47076 * 180.02562 * 18 17 16 20 20 C 1.36945 * 120.00151 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99290 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00372 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00300 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99790 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47248 * 90.00328 * 24 22 20 26 26 H 1.48499 * 109.47171 * 210.00266 * 24 22 20 27 27 H 1.48494 * 109.47263 * 330.00230 * 24 22 20 28 28 H 1.08994 * 109.46618 * 90.02707 * 1 2 3 29 29 H 1.08996 * 109.46953 * 210.02615 * 1 2 3 30 30 H 1.08997 * 109.47407 * 330.02889 * 1 2 3 31 31 H 1.09002 * 109.47391 * 270.00059 * 6 5 4 32 32 H 1.09001 * 109.46813 * 150.00115 * 6 5 4 33 33 H 1.09004 * 109.47041 * 30.00242 * 6 5 4 34 34 H 1.09001 * 109.47274 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47166 * 300.00227 * 7 5 4 36 36 H 1.09004 * 109.47230 * 60.00178 * 7 5 4 37 37 H 0.97001 * 119.99941 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.46966 * 179.97438 * 15 13 12 39 39 H 1.09004 * 109.46706 * 300.00097 * 15 13 12 40 40 H 1.08998 * 109.47164 * 59.99693 * 15 13 12 41 41 H 1.09005 * 109.47144 * 55.00366 * 16 13 12 42 42 H 1.09005 * 109.47206 * 175.00473 * 16 13 12 43 43 H 1.08996 * 109.47080 * 299.99566 * 17 16 13 44 44 H 1.09002 * 109.47080 * 60.00584 * 17 16 13 45 45 H 1.09005 * 109.47187 * 300.00186 * 18 17 16 46 46 H 1.09005 * 109.46586 * 59.99873 * 18 17 16 47 47 H 0.97002 * 120.00646 * 0.02562 * 19 18 17 48 48 H 0.96998 * 120.00559 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2195 1.0979 0.0000 4 6 3.5153 0.9681 0.0005 5 7 4.4100 2.0167 0.0001 6 6 3.9202 3.3974 -0.0005 7 6 5.8506 1.7505 0.0002 8 16 3.9515 -0.6845 -0.0064 9 6 2.2513 -1.1467 0.0005 10 6 1.7296 -2.5126 0.0006 11 8 0.5274 -2.7052 -0.0003 12 7 2.5795 -3.5587 0.0006 13 6 2.0568 -4.9273 0.0013 14 1 1.1406 -4.9665 -0.5880 15 6 1.7578 -5.3584 1.4385 16 6 3.0959 -5.8703 -0.6084 17 6 3.3028 -5.5167 -2.0826 18 6 4.3425 -6.4594 -2.6921 19 7 4.5410 -6.1204 -4.1034 20 6 5.4313 -6.8344 -4.8604 21 1 5.9873 -7.6470 -4.4167 22 6 5.6199 -6.5129 -6.1975 23 7 6.4759 -7.1987 -6.9248 24 14 4.6586 -5.1068 -6.9645 25 1 5.4223 -3.8427 -6.8099 26 1 4.4450 -5.3826 -8.4079 27 1 3.3444 -4.9773 -6.2856 28 1 -0.3632 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 3.7987 3.7395 -1.0282 32 1 4.6375 4.0376 0.5131 33 1 2.9599 3.4425 0.5134 34 1 6.3947 2.6951 -0.0007 35 1 6.1146 1.1796 0.8904 36 1 6.1146 1.1789 -0.8896 37 1 3.5373 -3.4053 0.0009 38 1 1.3685 -6.3765 1.4388 39 1 2.6741 -5.3191 2.0276 40 1 1.0176 -4.6865 1.8728 41 1 4.0400 -5.7654 -0.0736 42 1 2.7448 -6.8991 -0.5274 43 1 2.3589 -5.6217 -2.6173 44 1 3.6540 -4.4880 -2.1636 45 1 5.2864 -6.3540 -2.1572 46 1 3.9917 -7.4883 -2.6110 47 1 4.0419 -5.3903 -4.5018 48 1 6.6074 -6.9743 -7.8593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755515282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:54 Heat of formation + Delta-G solvation = 18.219191 kcal Electronic energy + Delta-G solvation = -27025.502269 eV Core-core repulsion = 23242.542582 eV Total energy + Delta-G solvation = -3782.959688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.46659 -39.51928 -37.37099 -36.63865 -34.97702 -32.63704 -31.64513 -31.20953 -29.82121 -28.89601 -28.07541 -26.76715 -25.87400 -23.08020 -22.49345 -22.03832 -20.95311 -20.68003 -19.62169 -18.53902 -17.48758 -17.12000 -16.77408 -16.24734 -15.88121 -15.21781 -15.08119 -14.65069 -14.47688 -14.26375 -14.04101 -13.87137 -13.63782 -13.52661 -13.27435 -13.18064 -12.93286 -12.68967 -12.63969 -12.54712 -12.52821 -12.18560 -12.15838 -11.68610 -11.44066 -11.24673 -10.95450 -10.88617 -10.50057 -10.37388 -10.28066 -10.18208 -10.08575 -9.75227 -9.57327 -9.49332 -9.13888 -8.87006 -7.94854 -7.20480 -5.75227 -3.10230 0.30168 0.72454 1.42459 2.31039 2.38073 3.11716 3.18394 3.39187 3.43464 3.46777 4.05503 4.48987 4.61078 4.62477 4.68963 4.74096 4.86147 4.97351 5.02763 5.06820 5.08834 5.11924 5.30429 5.39089 5.46058 5.53101 5.55401 5.56477 5.58865 5.69319 5.73416 5.89367 5.96568 6.03817 6.06998 6.11865 6.16496 6.21040 6.32431 6.45401 6.49074 6.77903 6.81478 7.38490 7.58155 8.01719 8.15186 8.44273 9.23822 9.96591 10.16775 11.43367 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.003001 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.871526 B = 9327.239231 C =11110.634480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.206 3.794 3 N -0.555 5.555 4 C 0.327 3.673 5 N -0.578 5.578 6 C 0.098 3.902 7 C 0.083 3.917 8 S 0.135 5.865 9 C -0.354 4.354 10 C 0.608 3.392 11 O -0.535 6.535 12 N -0.720 5.720 13 C 0.143 3.857 14 H 0.091 0.909 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.130 4.130 18 C 0.157 3.843 19 N -0.758 5.758 20 C -0.243 4.243 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.936 5.936 24 Si 0.884 3.116 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.396 0.604 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.025 0.975 46 H 0.026 0.974 47 H 0.360 0.640 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 19.991 21.577 29.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.067 3.933 3 N -0.281 5.281 4 C -0.040 4.040 5 N -0.296 5.296 6 C -0.046 4.046 7 C -0.060 4.060 8 S 0.386 5.614 9 C -0.480 4.480 10 C 0.395 3.605 11 O -0.415 6.415 12 N -0.371 5.371 13 C 0.039 3.961 14 H 0.109 0.891 15 C -0.220 4.220 16 C -0.161 4.161 17 C -0.168 4.168 18 C 0.030 3.970 19 N -0.404 5.404 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.230 0.770 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.193 0.807 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.461 19.799 21.500 29.733 hybrid contribution -0.766 1.221 -0.804 1.651 sum -6.227 21.021 20.696 30.149 Atomic orbital electron populations 1.20661 0.86089 1.04268 1.03759 1.20527 0.97795 0.84316 0.90702 1.66057 1.02103 1.31666 1.28249 1.23651 0.90871 0.92876 0.96640 1.45757 1.04030 1.03519 1.76268 1.21793 1.01152 0.79468 1.02234 1.21980 0.77666 1.03621 1.02734 1.83806 1.06736 0.98293 1.72523 1.24968 0.94252 0.98584 1.30235 1.16479 0.85981 0.82366 0.75694 1.90769 1.14299 1.85065 1.51343 1.45984 1.09409 1.06000 1.75728 1.21062 0.98262 0.80025 0.96789 0.89090 1.22172 1.01838 1.01731 0.96276 1.21848 0.98640 0.99410 0.96248 1.21791 1.00323 1.00252 0.94458 1.20627 0.95240 0.95855 0.85261 1.42743 1.50525 1.40071 1.07013 1.19080 1.14576 1.11662 0.91975 0.89243 1.24669 0.99157 0.99088 0.96337 1.69699 1.38454 1.42467 1.07766 0.86546 0.80161 0.83072 0.78784 1.21123 1.21683 1.20305 0.89990 0.88055 0.90984 0.92468 0.90869 0.90016 0.88859 0.91456 0.91279 0.76983 0.91443 0.92546 0.92207 0.91288 0.89951 0.91907 0.92189 0.95710 0.95636 0.80718 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 9.71 36.01 0.35 -0.65 16 2 C 0.21 2.64 6.83 -83.55 -0.57 2.07 16 3 N -0.55 -6.86 9.71 -10.94 -0.11 -6.97 16 4 C 0.33 3.50 7.72 -87.98 -0.68 2.82 16 5 N -0.58 -4.53 3.36 -192.00 -0.64 -5.18 16 6 C 0.10 0.58 10.51 59.85 0.63 1.21 16 7 C 0.08 0.40 9.98 59.85 0.60 0.99 16 8 S 0.13 1.37 21.39 -107.50 -2.30 -0.93 16 9 C -0.35 -4.52 6.49 -36.93 -0.24 -4.76 16 10 C 0.61 8.32 7.73 -13.05 -0.10 8.22 16 11 O -0.54 -8.48 13.96 5.14 0.07 -8.41 16 12 N -0.72 -8.50 4.53 -55.25 -0.25 -8.75 16 13 C 0.14 1.63 2.57 -67.93 -0.17 1.46 16 14 H 0.09 1.20 7.57 -51.93 -0.39 0.80 16 15 C -0.16 -1.60 9.48 37.16 0.35 -1.24 16 16 C -0.12 -1.42 4.75 -26.73 -0.13 -1.54 16 17 C -0.13 -1.98 5.22 -26.73 -0.14 -2.12 16 18 C 0.16 3.05 6.26 -4.04 -0.03 3.02 16 19 N -0.76 -18.60 5.41 -59.91 -0.32 -18.92 16 20 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 21 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 22 C 0.00 0.09 5.50 -17.44 -0.10 -0.01 16 23 N -0.94 -29.85 13.97 55.49 0.78 -29.08 16 24 Si 0.88 22.68 27.74 -169.99 -4.71 17.97 16 25 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.28 -6.77 6.52 56.52 0.37 -6.41 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.10 1.23 6.04 -51.93 -0.31 0.91 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.24 7.92 -51.93 -0.41 -0.17 16 33 H 0.08 0.58 7.59 -51.93 -0.39 0.19 16 34 H 0.09 0.22 7.79 -51.93 -0.40 -0.18 16 35 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 4.16 7.77 -40.82 -0.32 3.84 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.92 7.75 -51.93 -0.40 0.52 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.36 8.70 5.53 -40.82 -0.23 8.48 16 48 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 404.20 15.07 6.09 6.09 Total: -1.00 -35.85 404.20 -9.73 -45.59 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.95 Total: 6.33 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.38 Total: 2.26 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.55 Total: -68.90 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.97 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.30 Total: -0.93 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.85 -9.73 -45.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755515282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.806 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds