Wall clock time and date at job start Sat Apr 11 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30887 * 122.98146 * 2 1 4 4 C 1.30229 * 117.25763 * 179.97438 * 3 2 1 5 5 N 1.37845 * 124.74452 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99984 * 0.02562 * 5 4 3 7 7 C 1.46502 * 119.99954 * 180.02562 * 5 4 3 8 8 S 1.70919 * 110.50992 * 0.26685 * 4 3 2 9 9 C 1.36703 * 122.98510 * 179.97438 * 2 1 3 10 10 C 1.46218 * 126.11065 * 0.02562 * 9 2 1 11 11 O 1.21750 * 120.00307 * 0.02562 * 10 9 2 12 12 N 1.34783 * 119.99996 * 179.97438 * 10 9 2 13 13 C 1.46502 * 120.00132 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.46604 * 35.00700 * 13 12 10 15 15 C 1.53000 * 109.47463 * 275.00520 * 13 12 10 16 16 C 1.52996 * 109.47072 * 155.00127 * 13 12 10 17 17 C 1.53002 * 109.47029 * 295.00184 * 16 13 12 18 18 C 1.53006 * 109.46991 * 179.97438 * 17 16 13 19 19 N 1.46489 * 109.47076 * 180.02562 * 18 17 16 20 20 C 1.36945 * 120.00151 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99290 * 359.97438 * 20 19 18 22 22 C 1.38807 * 120.00372 * 180.02562 * 20 19 18 23 23 N 1.31612 * 120.00300 * 179.97438 * 22 20 19 24 24 Si 1.86802 * 119.99790 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47248 * 90.00328 * 24 22 20 26 26 H 1.48499 * 109.47171 * 210.00266 * 24 22 20 27 27 H 1.48494 * 109.47263 * 330.00230 * 24 22 20 28 28 H 1.08994 * 109.46618 * 90.02707 * 1 2 3 29 29 H 1.08996 * 109.46953 * 210.02615 * 1 2 3 30 30 H 1.08997 * 109.47407 * 330.02889 * 1 2 3 31 31 H 1.09002 * 109.47391 * 270.00059 * 6 5 4 32 32 H 1.09001 * 109.46813 * 150.00115 * 6 5 4 33 33 H 1.09004 * 109.47041 * 30.00242 * 6 5 4 34 34 H 1.09001 * 109.47274 * 179.97438 * 7 5 4 35 35 H 1.09000 * 109.47166 * 300.00227 * 7 5 4 36 36 H 1.09004 * 109.47230 * 60.00178 * 7 5 4 37 37 H 0.97001 * 119.99941 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.46966 * 179.97438 * 15 13 12 39 39 H 1.09004 * 109.46706 * 300.00097 * 15 13 12 40 40 H 1.08998 * 109.47164 * 59.99693 * 15 13 12 41 41 H 1.09005 * 109.47144 * 55.00366 * 16 13 12 42 42 H 1.09005 * 109.47206 * 175.00473 * 16 13 12 43 43 H 1.08996 * 109.47080 * 299.99566 * 17 16 13 44 44 H 1.09002 * 109.47080 * 60.00584 * 17 16 13 45 45 H 1.09005 * 109.47187 * 300.00186 * 18 17 16 46 46 H 1.09005 * 109.46586 * 59.99873 * 18 17 16 47 47 H 0.97002 * 120.00646 * 0.02562 * 19 18 17 48 48 H 0.96998 * 120.00559 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2195 1.0979 0.0000 4 6 3.5153 0.9681 0.0005 5 7 4.4100 2.0167 0.0001 6 6 3.9202 3.3974 -0.0005 7 6 5.8506 1.7505 0.0002 8 16 3.9515 -0.6845 -0.0064 9 6 2.2513 -1.1467 0.0005 10 6 1.7296 -2.5126 0.0006 11 8 0.5274 -2.7052 -0.0003 12 7 2.5795 -3.5587 0.0006 13 6 2.0568 -4.9273 0.0013 14 1 1.1406 -4.9665 -0.5880 15 6 1.7578 -5.3584 1.4385 16 6 3.0959 -5.8703 -0.6084 17 6 3.3028 -5.5167 -2.0826 18 6 4.3425 -6.4594 -2.6921 19 7 4.5410 -6.1204 -4.1034 20 6 5.4313 -6.8344 -4.8604 21 1 5.9873 -7.6470 -4.4167 22 6 5.6199 -6.5129 -6.1975 23 7 6.4759 -7.1987 -6.9248 24 14 4.6586 -5.1068 -6.9645 25 1 5.4223 -3.8427 -6.8099 26 1 4.4450 -5.3826 -8.4079 27 1 3.3444 -4.9773 -6.2856 28 1 -0.3632 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 3.7987 3.7395 -1.0282 32 1 4.6375 4.0376 0.5131 33 1 2.9599 3.4425 0.5134 34 1 6.3947 2.6951 -0.0007 35 1 6.1146 1.1796 0.8904 36 1 6.1146 1.1789 -0.8896 37 1 3.5373 -3.4053 0.0009 38 1 1.3685 -6.3765 1.4388 39 1 2.6741 -5.3191 2.0276 40 1 1.0176 -4.6865 1.8728 41 1 4.0400 -5.7654 -0.0736 42 1 2.7448 -6.8991 -0.5274 43 1 2.3589 -5.6217 -2.6173 44 1 3.6540 -4.4880 -2.1636 45 1 5.2864 -6.3540 -2.1572 46 1 3.9917 -7.4883 -2.6110 47 1 4.0419 -5.3903 -4.5018 48 1 6.6074 -6.9743 -7.8593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755515282.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:52 Heat of formation + Delta-G solvation = -5.931394 kcal Electronic energy + Delta-G solvation = -27026.549517 eV Core-core repulsion = 23242.542582 eV Total energy + Delta-G solvation = -3784.006936 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.35127 -40.42656 -38.18083 -37.69311 -36.59013 -34.24784 -32.97866 -32.28234 -31.20669 -29.34829 -28.94488 -27.41442 -27.35094 -24.57567 -23.41373 -23.08219 -22.46240 -21.64824 -20.51001 -19.62608 -19.29459 -17.97866 -17.63125 -16.95757 -16.77520 -16.59450 -16.10218 -15.86807 -15.78679 -15.59133 -15.07814 -15.01171 -14.82654 -14.54434 -14.45183 -13.87345 -13.78134 -13.61007 -13.57120 -13.50028 -13.44848 -13.30940 -13.01022 -12.94536 -12.85275 -12.49367 -12.27014 -12.11845 -12.05306 -11.87786 -11.74363 -11.54466 -11.14628 -11.02029 -10.98230 -10.67294 -10.28915 -10.09624 -9.30704 -8.67769 -8.04827 -5.37893 -0.55630 -0.05055 0.58050 1.36017 1.38221 1.45939 1.48558 1.71233 2.19131 2.22299 2.46041 3.26720 3.33435 3.49337 3.82842 3.96966 4.06993 4.09629 4.15094 4.18291 4.33037 4.36181 4.41251 4.56541 4.61377 4.63945 4.67262 4.71870 4.75337 4.82363 4.83881 4.85012 4.89099 4.91652 5.01039 5.12543 5.25123 5.32588 5.36139 5.41732 5.58148 5.60108 5.74441 5.78703 6.20073 6.46173 6.74801 7.06325 7.18281 7.83812 8.01637 9.16861 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.003001 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.871526 B = 9327.239231 C =11110.634480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.198 3.802 3 N -0.576 5.576 4 C 0.318 3.682 5 N -0.573 5.573 6 C 0.093 3.907 7 C 0.073 3.927 8 S 0.168 5.832 9 C -0.385 4.385 10 C 0.604 3.396 11 O -0.566 6.566 12 N -0.714 5.714 13 C 0.145 3.855 14 H 0.072 0.928 15 C -0.155 4.155 16 C -0.112 4.112 17 C -0.118 4.118 18 C 0.153 3.847 19 N -0.763 5.763 20 C -0.235 4.235 21 H 0.059 0.941 22 C -0.063 4.063 23 N -0.983 5.983 24 Si 0.954 3.046 25 H -0.276 1.276 26 H -0.294 1.294 27 H -0.258 1.258 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.030 0.970 46 H 0.025 0.975 47 H 0.364 0.636 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.392 21.854 22.810 32.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 N -0.303 5.303 4 C -0.050 4.050 5 N -0.289 5.289 6 C -0.050 4.050 7 C -0.069 4.069 8 S 0.419 5.581 9 C -0.511 4.511 10 C 0.392 3.608 11 O -0.448 6.448 12 N -0.365 5.365 13 C 0.041 3.959 14 H 0.090 0.910 15 C -0.213 4.213 16 C -0.150 4.150 17 C -0.156 4.156 18 C 0.027 3.973 19 N -0.409 5.409 20 C -0.366 4.366 21 H 0.077 0.923 22 C -0.255 4.255 23 N -0.634 5.634 24 Si 0.781 3.219 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.183 1.183 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.238 0.762 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.063 0.937 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.048 0.952 46 H 0.043 0.957 47 H 0.196 0.804 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.080 21.688 22.786 31.865 hybrid contribution -0.752 0.667 -1.117 1.503 sum -5.831 22.355 21.669 31.675 Atomic orbital electron populations 1.20602 0.85767 1.04255 1.03664 1.20763 0.98419 0.84708 0.90399 1.66091 1.02925 1.31596 1.29704 1.24016 0.91019 0.94018 0.95958 1.46219 1.04854 1.03569 1.74223 1.21954 1.01544 0.78926 1.02625 1.22281 0.76026 1.05547 1.03025 1.83507 1.04521 0.97555 1.72468 1.24970 0.96044 0.98147 1.31970 1.16662 0.85760 0.83052 0.75313 1.90744 1.15515 1.85616 1.52886 1.45955 1.09621 1.05848 1.75112 1.21030 0.97412 0.79818 0.97631 0.90954 1.22102 1.02122 1.02094 0.94970 1.21772 0.99576 1.00023 0.93628 1.21666 0.98354 0.99104 0.96506 1.20843 0.96763 0.96863 0.82831 1.42819 1.49639 1.39664 1.08764 1.19083 1.14375 1.10753 0.92430 0.92331 1.25491 1.00705 1.02271 0.97014 1.69872 1.40667 1.44757 1.08102 0.85430 0.79451 0.79610 0.77431 1.20159 1.22022 1.18258 0.90072 0.89235 0.89705 0.92289 0.87592 0.91461 0.85886 0.90594 0.91435 0.76154 0.90015 0.91205 0.93654 0.89558 0.88646 0.92683 0.92192 0.95187 0.95696 0.80356 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 9.71 71.24 0.69 -1.23 16 2 C 0.20 5.06 6.83 42.34 0.29 5.35 16 3 N -0.58 -13.95 9.71 -188.52 -1.83 -15.78 16 4 C 0.32 6.39 7.72 179.42 1.38 7.77 16 5 N -0.57 -7.72 3.36 -761.36 -2.56 -10.27 16 6 C 0.09 0.90 10.51 127.77 1.34 2.24 16 7 C 0.07 0.49 9.98 127.77 1.27 1.76 16 8 S 0.17 3.20 21.39 -56.49 -1.21 1.99 16 9 C -0.39 -9.71 6.49 23.98 0.16 -9.56 16 10 C 0.60 16.45 7.73 86.31 0.67 17.12 16 11 O -0.57 -18.26 13.96 -4.51 -0.06 -18.33 16 12 N -0.71 -16.06 4.53 -446.91 -2.02 -18.08 16 13 C 0.15 3.10 2.57 44.99 0.12 3.22 16 14 H 0.07 1.85 7.57 -2.39 -0.02 1.84 16 15 C -0.15 -2.76 9.48 71.98 0.68 -2.08 16 16 C -0.11 -2.29 4.75 30.59 0.15 -2.15 16 17 C -0.12 -3.37 5.22 30.60 0.16 -3.21 16 18 C 0.15 5.69 6.26 86.38 0.54 6.23 16 19 N -0.76 -36.60 5.41 -343.45 -1.86 -38.46 16 20 C -0.24 -13.72 10.47 84.03 0.88 -12.84 16 21 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 22 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 23 N -0.98 -63.78 13.97 21.65 0.30 -63.47 16 24 Si 0.95 46.57 27.74 68.60 1.90 48.47 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 27 H -0.26 -11.63 6.52 99.48 0.65 -10.98 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 2.26 6.04 -2.39 -0.01 2.25 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.33 7.92 -2.39 -0.02 0.31 16 33 H 0.07 0.88 7.59 -2.38 -0.02 0.86 16 34 H 0.12 0.11 7.79 -2.39 -0.02 0.09 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.40 7.77 7.77 -92.71 -0.72 7.05 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.72 7.75 -2.39 -0.02 1.70 16 45 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.02 0.94 8.14 -2.38 -0.02 0.93 16 47 H 0.36 16.86 5.53 -92.71 -0.51 16.34 16 48 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -78.54 404.20 1.14 -77.40 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.32 Total: 27.24 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 8.80 Total: 9.29 kcal Atomic # 7 Polarization: -138.10 SS G_CDS: -7.96 Total: -146.06 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.06 Total: -18.33 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 1.90 Total: 48.47 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.21 Total: 1.99 kcal Total: -78.54 1.14 -77.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755515282.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.472 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds