Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47367 * 2 1 4 4 C 1.53005 * 109.47616 * 120.00396 * 2 1 3 5 5 C 1.50694 * 109.47448 * 174.99962 * 4 2 1 6 6 N 1.29519 * 126.14905 * 89.99816 * 5 4 2 7 7 N 1.26247 * 116.58023 * 179.75483 * 6 5 4 8 8 C 1.29886 * 117.66013 * 0.46284 * 7 6 5 9 9 N 1.39079 * 125.65209 * 179.83055 * 8 7 6 10 10 C 1.34777 * 119.99725 * 359.69380 * 9 8 7 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72563 * 10 9 8 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 9 14 14 C 1.46901 * 110.99414 * 293.95159 * 13 12 10 15 15 C 1.46895 * 110.99932 * 170.00207 * 13 12 10 16 16 C 1.53008 * 109.46994 * 189.99830 * 15 13 12 17 17 C 1.52999 * 109.47063 * 179.97438 * 16 15 13 18 18 C 1.50709 * 109.46808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99820 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99597 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00278 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99638 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47273 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46956 * 119.99987 * 22 20 18 25 25 H 1.48499 * 109.47128 * 239.99966 * 22 20 18 26 26 S 1.71306 * 108.69690 * 359.57124 * 8 7 6 27 27 H 1.09009 * 109.46686 * 299.99696 * 1 2 3 28 28 H 1.08999 * 109.47370 * 59.99757 * 1 2 3 29 29 H 1.08999 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46781 * 239.99832 * 2 1 3 31 31 H 1.08999 * 109.47074 * 300.00424 * 3 2 1 32 32 H 1.08996 * 109.47032 * 60.00232 * 3 2 1 33 33 H 1.09001 * 109.47031 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46984 * 54.99019 * 4 2 1 35 35 H 1.08999 * 109.46443 * 294.99727 * 4 2 1 36 36 H 0.97000 * 120.00381 * 179.70106 * 9 8 7 37 37 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 38 38 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 39 39 H 1.09002 * 109.47259 * 60.00431 * 14 13 12 40 40 H 1.09002 * 109.47005 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47311 * 299.99546 * 14 13 12 42 42 H 1.09003 * 109.46985 * 309.99150 * 15 13 12 43 43 H 1.08993 * 109.47682 * 69.99580 * 15 13 12 44 44 H 1.09003 * 109.46699 * 299.99495 * 16 15 13 45 45 H 1.09001 * 109.47055 * 59.99729 * 16 15 13 46 46 H 1.08995 * 109.47203 * 299.99792 * 17 16 15 47 47 H 1.09001 * 109.47208 * 60.00065 * 17 16 15 48 48 H 0.96998 * 119.99671 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 7 4.3893 0.0332 1.6528 7 7 5.6127 -0.2425 1.5079 8 6 5.9133 -1.3523 0.9036 9 7 7.2003 -1.8158 0.6526 10 6 8.2663 -1.0892 1.0428 11 8 8.1033 -0.0314 1.6132 12 6 9.6608 -1.5945 0.7764 13 7 10.6389 -0.6316 1.3002 14 6 10.5788 0.6354 0.5593 15 6 11.9962 -1.1929 1.2739 16 6 12.9433 -0.2736 2.0478 17 6 14.3568 -0.8585 2.0210 18 6 15.2898 0.0473 2.7827 19 1 14.9124 0.9501 3.2397 20 6 16.6252 -0.2765 2.8960 21 7 17.0849 -1.3756 2.3389 22 14 17.7818 0.8467 3.8396 23 1 17.0228 2.0097 4.3655 24 1 18.3856 0.0977 4.9708 25 1 18.8562 1.3252 2.9330 26 16 4.4617 -2.1538 0.4734 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6054 -1.7198 1.2951 35 1 1.7518 -0.1584 2.1369 36 1 7.3308 -2.6620 0.1967 37 1 9.7989 -2.5570 1.2691 38 1 9.8058 -1.7120 -0.2975 39 1 9.5812 1.0644 0.6535 40 1 11.3133 1.3300 0.9671 41 1 10.7977 0.4520 -0.4926 42 1 11.9901 -2.1802 1.7359 43 1 12.3347 -1.2771 0.2413 44 1 12.9494 0.7136 1.5857 45 1 12.6048 -0.1895 3.0805 46 1 14.3504 -1.8456 2.4831 47 1 14.6956 -0.9430 0.9884 48 1 18.0243 -1.6036 2.4190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439010933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = 24.753967 kcal Electronic energy + Delta-G solvation = -26063.789141 eV Core-core repulsion = 22281.112823 eV Total energy + Delta-G solvation = -3782.676318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.63971 -40.13784 -37.40633 -36.97679 -35.39450 -33.63634 -31.72002 -31.30628 -29.13659 -27.78896 -27.52081 -27.05743 -25.56913 -24.37164 -22.61065 -21.43762 -20.76354 -20.24564 -19.91565 -19.11951 -17.87507 -17.05821 -16.55439 -16.21374 -15.70255 -15.50253 -15.18749 -14.90633 -14.76407 -14.64166 -14.36096 -14.16127 -13.73862 -13.48031 -13.07907 -12.98864 -12.76369 -12.46804 -12.31113 -12.12052 -11.75064 -11.74770 -11.61296 -11.48105 -11.34125 -11.27520 -11.14959 -10.85889 -10.80999 -10.56717 -10.52862 -10.46623 -9.97044 -9.86425 -9.60355 -9.32669 -9.05722 -9.02686 -8.32475 -8.16840 -5.97967 -3.99443 0.10722 0.18199 0.82244 2.12555 2.32504 2.60056 3.33500 3.40907 3.46321 3.70884 3.99369 4.18957 4.29507 4.35678 4.49613 4.54411 4.69907 4.93994 4.99326 5.06646 5.08012 5.12315 5.21243 5.28934 5.38253 5.43861 5.46667 5.49368 5.60157 5.64352 5.66483 5.80181 5.81546 5.93390 5.96301 6.23631 6.32318 6.54644 6.69789 6.76742 7.07698 7.24244 7.30528 7.70704 7.75493 7.84559 8.02685 8.39483 8.46553 9.07945 9.64718 11.13560 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.035541 B = 0.001549 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.625829 B =18068.361538 C =18480.736560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.032 4.032 5 C 0.008 3.992 6 N -0.222 5.222 7 N -0.271 5.271 8 C 0.237 3.763 9 N -0.633 5.633 10 C 0.504 3.496 11 O -0.440 6.440 12 C 0.043 3.957 13 N -0.526 5.526 14 C 0.016 3.984 15 C 0.057 3.943 16 C -0.106 4.106 17 C 0.022 3.978 18 C -0.517 4.517 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.891 3.109 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.285 1.285 26 S 0.092 5.908 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.424 0.576 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.019 0.981 42 H 0.071 0.929 43 H 0.032 0.968 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.016 0.984 47 H 0.014 0.986 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.051 -5.594 -9.604 36.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.074 4.074 5 C -0.274 4.274 6 N -0.057 5.057 7 N -0.115 5.115 8 C -0.133 4.133 9 N -0.287 5.287 10 C 0.288 3.712 11 O -0.304 6.304 12 C -0.089 4.089 13 N -0.250 5.250 14 C -0.132 4.132 15 C -0.069 4.069 16 C -0.144 4.144 17 C -0.016 4.016 18 C -0.555 4.555 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 S 0.332 5.668 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.262 0.738 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.034 0.966 47 H 0.032 0.968 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -34.821 -4.507 -8.537 36.134 hybrid contribution 1.183 -0.241 -0.635 1.364 sum -33.638 -4.748 -9.172 35.188 Atomic orbital electron populations 1.21831 0.94085 1.02021 1.02455 1.21140 0.96193 0.97044 0.96736 1.21875 1.01772 0.95077 1.02014 1.20347 0.83586 1.02665 1.00818 1.29890 1.02525 0.92256 1.02726 1.71461 0.94550 1.23830 1.15869 1.71563 1.08959 1.13446 1.17532 1.25986 0.92233 0.95135 0.99931 1.43300 1.00706 1.25315 1.59372 1.21356 0.85982 0.85023 0.78840 1.90842 1.84702 1.20235 1.34651 1.21945 0.88499 0.98221 1.00236 1.61777 1.05438 1.03452 1.54364 1.22611 1.03974 0.92029 0.94601 1.22375 0.85814 0.99329 0.99388 1.21674 0.95970 0.97581 0.99135 1.19084 0.89190 0.96281 0.97028 1.21301 0.93256 1.07797 1.33170 0.92560 1.25019 0.98366 0.95293 0.95815 1.69975 1.14554 1.24270 1.44912 0.86546 0.80887 0.80931 0.79726 1.19678 1.21033 1.21071 1.84737 0.98168 1.25456 1.58440 0.92186 0.92145 0.92424 0.90939 0.92609 0.92096 0.92311 0.89158 0.88005 0.73820 0.87180 0.91469 0.90317 0.90192 0.96276 0.91012 0.94949 0.93189 0.92382 0.96571 0.96796 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.19 37.15 0.34 -0.16 16 2 C -0.09 -0.45 2.91 -90.62 -0.26 -0.72 16 3 C -0.15 -1.01 9.00 37.16 0.33 -0.68 16 4 C -0.03 -0.17 5.32 -27.88 -0.15 -0.32 16 5 C 0.01 0.07 6.27 -13.26 -0.08 -0.01 16 6 N -0.22 -2.83 10.95 33.58 0.37 -2.46 16 7 N -0.27 -3.96 9.74 29.97 0.29 -3.67 16 8 C 0.24 2.60 8.14 -87.06 -0.71 1.89 16 9 N -0.63 -5.74 5.41 -12.92 -0.07 -5.81 16 10 C 0.50 6.28 7.52 -10.98 -0.08 6.19 16 11 O -0.44 -7.61 12.99 5.55 0.07 -7.54 16 12 C 0.04 0.47 5.45 -4.97 -0.03 0.45 16 13 N -0.53 -8.11 4.50 -244.36 -1.10 -9.21 16 14 C 0.02 0.24 9.01 60.07 0.54 0.78 16 15 C 0.06 0.97 4.96 -3.82 -0.02 0.95 16 16 C -0.11 -2.23 5.08 -26.73 -0.14 -2.37 16 17 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 18 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 22 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 26 S 0.09 0.66 23.31 -107.50 -2.51 -1.85 16 27 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.54 6.84 -51.93 -0.36 0.19 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.42 1.91 8.82 -40.82 -0.36 1.55 16 37 H 0.11 0.97 7.93 -51.92 -0.41 0.56 16 38 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 39 H 0.08 1.25 5.88 -51.93 -0.31 0.95 16 40 H 0.08 1.30 6.30 -51.93 -0.33 0.98 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 44 H 0.05 1.05 6.47 -51.93 -0.34 0.71 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 403.61 15.07 6.08 6.08 Total: -1.00 -36.59 403.61 -9.91 -46.50 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -7.97 Total: -5.40 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -0.80 Total: -7.25 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.23 Total: -47.54 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.07 Total: -7.54 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.59 -9.91 -46.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439010933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.254 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds