Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47367 * 2 1 4 4 C 1.53005 * 109.47616 * 120.00396 * 2 1 3 5 5 C 1.50694 * 109.47448 * 174.99962 * 4 2 1 6 6 N 1.29519 * 126.14905 * 89.99816 * 5 4 2 7 7 N 1.26247 * 116.58023 * 179.75483 * 6 5 4 8 8 C 1.29886 * 117.66013 * 0.46284 * 7 6 5 9 9 N 1.39079 * 125.65209 * 179.83055 * 8 7 6 10 10 C 1.34777 * 119.99725 * 359.69380 * 9 8 7 11 11 O 1.21283 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.50700 * 119.99675 * 179.72563 * 10 9 8 13 13 N 1.46904 * 109.47192 * 180.28082 * 12 10 9 14 14 C 1.46901 * 110.99414 * 293.95159 * 13 12 10 15 15 C 1.46895 * 110.99932 * 170.00207 * 13 12 10 16 16 C 1.53008 * 109.46994 * 189.99830 * 15 13 12 17 17 C 1.52999 * 109.47063 * 179.97438 * 16 15 13 18 18 C 1.50709 * 109.46808 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99820 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99597 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00278 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99638 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47273 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46956 * 119.99987 * 22 20 18 25 25 H 1.48499 * 109.47128 * 239.99966 * 22 20 18 26 26 S 1.71306 * 108.69690 * 359.57124 * 8 7 6 27 27 H 1.09009 * 109.46686 * 299.99696 * 1 2 3 28 28 H 1.08999 * 109.47370 * 59.99757 * 1 2 3 29 29 H 1.08999 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46781 * 239.99832 * 2 1 3 31 31 H 1.08999 * 109.47074 * 300.00424 * 3 2 1 32 32 H 1.08996 * 109.47032 * 60.00232 * 3 2 1 33 33 H 1.09001 * 109.47031 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46984 * 54.99019 * 4 2 1 35 35 H 1.08999 * 109.46443 * 294.99727 * 4 2 1 36 36 H 0.97000 * 120.00381 * 179.70106 * 9 8 7 37 37 H 1.09009 * 109.47352 * 300.27556 * 12 10 9 38 38 H 1.08998 * 109.47585 * 60.27844 * 12 10 9 39 39 H 1.09002 * 109.47259 * 60.00431 * 14 13 12 40 40 H 1.09002 * 109.47005 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47311 * 299.99546 * 14 13 12 42 42 H 1.09003 * 109.46985 * 309.99150 * 15 13 12 43 43 H 1.08993 * 109.47682 * 69.99580 * 15 13 12 44 44 H 1.09003 * 109.46699 * 299.99495 * 16 15 13 45 45 H 1.09001 * 109.47055 * 59.99729 * 16 15 13 46 46 H 1.08995 * 109.47203 * 299.99792 * 17 16 15 47 47 H 1.09001 * 109.47208 * 60.00065 * 17 16 15 48 48 H 0.96998 * 119.99671 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.8295 1.1888 6 7 4.3893 0.0332 1.6528 7 7 5.6127 -0.2425 1.5079 8 6 5.9133 -1.3523 0.9036 9 7 7.2003 -1.8158 0.6526 10 6 8.2663 -1.0892 1.0428 11 8 8.1033 -0.0314 1.6132 12 6 9.6608 -1.5945 0.7764 13 7 10.6389 -0.6316 1.3002 14 6 10.5788 0.6354 0.5593 15 6 11.9962 -1.1929 1.2739 16 6 12.9433 -0.2736 2.0478 17 6 14.3568 -0.8585 2.0210 18 6 15.2898 0.0473 2.7827 19 1 14.9124 0.9501 3.2397 20 6 16.6252 -0.2765 2.8960 21 7 17.0849 -1.3756 2.3389 22 14 17.7818 0.8467 3.8396 23 1 17.0228 2.0097 4.3655 24 1 18.3856 0.0977 4.9708 25 1 18.8562 1.3252 2.9330 26 16 4.4617 -2.1538 0.4734 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6054 -1.7198 1.2951 35 1 1.7518 -0.1584 2.1369 36 1 7.3308 -2.6620 0.1967 37 1 9.7989 -2.5570 1.2691 38 1 9.8058 -1.7120 -0.2975 39 1 9.5812 1.0644 0.6535 40 1 11.3133 1.3300 0.9671 41 1 10.7977 0.4520 -0.4926 42 1 11.9901 -2.1802 1.7359 43 1 12.3347 -1.2771 0.2413 44 1 12.9494 0.7136 1.5857 45 1 12.6048 -0.1895 3.0805 46 1 14.3504 -1.8456 2.4831 47 1 14.6956 -0.9430 0.9884 48 1 18.0243 -1.6036 2.4190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439010933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = -0.507935 kcal Electronic energy + Delta-G solvation = -26064.884579 eV Core-core repulsion = 22281.112823 eV Total energy + Delta-G solvation = -3783.771757 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.44520 -41.07032 -38.51123 -37.57415 -36.29832 -35.60167 -33.35496 -32.24313 -30.09972 -28.75755 -28.53041 -27.97050 -26.55193 -25.73450 -23.84083 -22.69220 -21.53351 -21.23822 -20.99702 -19.92276 -18.63885 -18.51493 -17.82032 -17.39463 -16.72257 -16.62923 -16.31310 -15.95891 -15.70903 -15.62839 -15.49468 -15.03318 -14.76477 -14.46479 -14.39684 -13.99190 -13.63633 -13.57591 -13.23076 -13.11040 -13.02390 -12.81532 -12.78559 -12.64840 -12.50809 -12.37321 -12.24367 -12.16346 -11.81249 -11.64843 -11.59072 -11.42688 -11.38132 -11.28959 -11.12749 -10.72315 -10.57791 -10.54163 -9.85998 -9.30824 -8.20372 -6.30179 -0.60045 -0.49017 0.12050 1.27550 1.38921 1.39576 1.52966 1.58858 1.76916 2.40852 2.87144 3.12895 3.13458 3.42778 3.83260 3.93389 3.97873 4.05202 4.08899 4.22580 4.29172 4.34764 4.40771 4.52733 4.62431 4.66766 4.74588 4.75105 4.81062 4.85312 4.91471 4.97107 5.01293 5.06801 5.09842 5.12012 5.26346 5.26475 5.41942 5.48136 5.53365 5.75294 5.83138 5.87801 6.01429 6.11796 6.29369 6.86128 6.90559 7.38714 7.64972 8.91432 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.035541 B = 0.001549 C = 0.001515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.625829 B =18068.361538 C =18480.736560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.035 4.035 5 C 0.008 3.992 6 N -0.266 5.266 7 N -0.325 5.325 8 C 0.207 3.793 9 N -0.616 5.616 10 C 0.508 3.492 11 O -0.498 6.498 12 C 0.045 3.955 13 N -0.547 5.547 14 C 0.023 3.977 15 C 0.072 3.928 16 C -0.094 4.094 17 C 0.027 3.973 18 C -0.544 4.544 19 H 0.053 0.947 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.961 3.039 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 S 0.185 5.815 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.445 0.555 37 H 0.138 0.862 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.045 0.955 45 H 0.044 0.956 46 H -0.002 1.002 47 H -0.004 1.004 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.828 -7.380 -10.576 39.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.207 4.207 4 C -0.077 4.077 5 C -0.274 4.274 6 N -0.101 5.101 7 N -0.169 5.169 8 C -0.163 4.163 9 N -0.272 5.272 10 C 0.293 3.707 11 O -0.367 6.367 12 C -0.087 4.087 13 N -0.272 5.272 14 C -0.125 4.125 15 C -0.055 4.055 16 C -0.132 4.132 17 C -0.010 4.010 18 C -0.582 4.582 19 H 0.071 0.929 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 S 0.426 5.574 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.140 0.860 35 H 0.120 0.880 36 H 0.288 0.712 37 H 0.156 0.844 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.016 0.984 47 H 0.015 0.985 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -36.633 -6.344 -9.540 38.383 hybrid contribution 1.588 0.246 -0.390 1.653 sum -35.046 -6.098 -9.931 36.932 Atomic orbital electron populations 1.21803 0.92470 1.03113 1.02611 1.21120 0.97376 0.95474 0.96629 1.21871 0.99822 0.96870 1.02172 1.20600 0.81486 1.04543 1.01022 1.30580 1.03849 0.92198 1.00790 1.71425 0.94657 1.25756 1.18302 1.71501 1.10316 1.15777 1.19316 1.26241 0.93971 0.95653 1.00423 1.43013 0.99692 1.25685 1.58786 1.21593 0.87060 0.84315 0.77755 1.90833 1.85581 1.22766 1.37471 1.22081 0.86343 0.97805 1.02424 1.61573 1.05325 1.04404 1.55855 1.22476 1.02731 0.91915 0.95408 1.22071 0.85902 0.98441 0.99076 1.21432 0.94407 0.98191 0.99192 1.18963 0.91678 0.95185 0.95199 1.21723 0.94420 1.08282 1.33798 0.92891 1.25899 1.00092 0.96817 0.96667 1.70080 1.15227 1.25809 1.45934 0.85459 0.78566 0.78947 0.78446 1.19143 1.20191 1.20152 1.84318 0.94319 1.22494 1.56260 0.92110 0.91991 0.90841 0.90481 0.92000 0.92429 0.95221 0.86038 0.88041 0.71221 0.84401 0.88078 0.91282 0.92127 0.94552 0.89830 0.94093 0.93600 0.93702 0.98384 0.98546 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 9.19 71.98 0.66 0.02 16 2 C -0.09 -0.71 2.91 -10.79 -0.03 -0.74 16 3 C -0.15 -2.02 9.00 71.98 0.65 -1.37 16 4 C -0.03 -0.31 5.32 29.85 0.16 -0.15 16 5 C 0.01 0.14 6.27 88.45 0.55 0.69 16 6 N -0.27 -7.03 10.95 -47.67 -0.52 -7.55 16 7 N -0.33 -9.83 9.74 -59.10 -0.58 -10.40 16 8 C 0.21 4.41 8.14 179.10 1.46 5.87 16 9 N -0.62 -10.29 5.41 -313.16 -1.69 -11.98 16 10 C 0.51 12.30 7.52 87.66 0.66 12.96 16 11 O -0.50 -17.81 12.99 -3.04 -0.04 -17.85 16 12 C 0.04 0.88 5.45 85.56 0.47 1.35 16 13 N -0.55 -16.43 4.50 -927.03 -4.17 -20.61 16 14 C 0.02 0.69 9.01 127.69 1.15 1.84 16 15 C 0.07 2.36 4.96 86.31 0.43 2.79 16 16 C -0.09 -4.05 5.08 30.60 0.16 -3.89 16 17 C 0.03 1.45 4.97 29.85 0.15 1.60 16 18 C -0.54 -31.92 9.11 25.60 0.23 -31.69 16 19 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 20 C 0.00 0.18 5.46 84.65 0.46 0.64 16 21 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 22 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 S 0.19 2.19 23.31 -56.49 -1.32 0.87 16 27 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 28 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.03 0.57 6.84 -2.39 -0.02 0.56 16 34 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.45 2.80 8.82 -92.71 -0.82 1.99 16 37 H 0.14 1.98 7.93 -2.38 -0.02 1.96 16 38 H 0.10 1.39 8.12 -2.39 -0.02 1.37 16 39 H 0.07 2.27 5.88 -2.39 -0.01 2.26 16 40 H 0.06 2.04 6.30 -2.39 -0.02 2.02 16 41 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.08 2.54 7.93 -2.39 -0.02 2.52 16 43 H 0.04 1.27 8.12 -2.39 -0.02 1.26 16 44 H 0.05 1.98 6.47 -2.39 -0.02 1.96 16 45 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 47 H 0.00 -0.22 8.14 -2.39 -0.02 -0.23 16 48 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -83.65 403.61 1.29 -82.36 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 0.14 Total: 4.26 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 7.15 Total: -10.07 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -6.68 Total: -106.95 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.04 Total: -17.85 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.32 Total: 0.87 kcal Total: -83.65 1.29 -82.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439010933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.855 kcal (2) G-P(sol) polarization free energy of solvation -83.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds