Wall clock time and date at job start Sat Apr 11 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.47189 * 2 1 4 4 C 1.33411 * 122.71339 * 124.99827 * 3 2 1 5 5 S 1.76180 * 108.06455 * 179.97438 * 4 3 2 6 6 C 1.70968 * 90.34107 * 359.97438 * 5 4 3 7 7 N 1.39005 * 124.94476 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99666 * 0.02562 * 7 6 5 9 9 O 1.21583 * 120.00582 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 0.02562 * 10 8 7 12 12 C 1.50694 * 109.47248 * 90.00174 * 11 10 8 13 13 H 1.07999 * 119.99904 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00385 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99650 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00268 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47003 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47185 * 120.00431 * 16 14 12 19 19 H 1.48507 * 109.47178 * 240.00326 * 16 14 12 20 20 C 1.46493 * 119.99864 * 179.73002 * 10 8 7 21 21 C 1.53000 * 109.47637 * 90.00039 * 20 10 8 22 22 C 1.52994 * 109.47472 * 179.97438 * 21 20 10 23 23 N 1.46903 * 109.47180 * 179.97438 * 22 21 20 24 24 C 1.46906 * 110.99791 * 170.00152 * 23 22 21 25 25 C 1.46900 * 111.00164 * 293.95283 * 23 22 21 26 26 N 1.29625 * 110.11201 * 0.26459 * 6 5 4 27 27 H 1.08997 * 109.46427 * 60.00320 * 1 2 3 28 28 H 1.08994 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47022 * 300.00926 * 1 2 3 30 30 H 1.08998 * 109.47451 * 239.99216 * 2 1 3 31 31 H 1.09010 * 109.46635 * 119.99431 * 2 1 3 32 32 H 1.07996 * 125.97277 * 359.95162 * 4 3 2 33 33 H 0.96996 * 120.00447 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47006 * 210.00121 * 11 10 8 35 35 H 1.09004 * 109.47665 * 329.99813 * 11 10 8 36 36 H 0.96998 * 120.00151 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.47192 * 209.99937 * 20 10 8 38 38 H 1.08996 * 109.47342 * 329.99648 * 20 10 8 39 39 H 1.09002 * 109.46747 * 300.00171 * 21 20 10 40 40 H 1.08996 * 109.47074 * 59.99445 * 21 20 10 41 41 H 1.08993 * 109.47409 * 300.00238 * 22 21 20 42 42 H 1.09008 * 109.47165 * 60.00188 * 22 21 20 43 43 H 1.09002 * 109.46994 * 60.00393 * 24 23 22 44 44 H 1.08998 * 109.46384 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.46962 * 300.00079 * 24 23 22 46 46 H 1.09006 * 109.47156 * 59.99975 * 25 23 22 47 47 H 1.08993 * 109.47504 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47194 * 300.00317 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.8797 1.8860 0.9195 5 16 3.2076 3.5780 0.5541 6 6 2.1717 3.4962 -0.8035 7 7 1.9058 4.5525 -1.6670 8 6 2.4841 5.7525 -1.4618 9 8 3.2387 5.9110 -0.5217 10 7 2.2259 6.7770 -2.2988 11 6 1.3163 6.5862 -3.4311 12 6 -0.0921 6.9105 -3.0043 13 1 -0.2899 7.2266 -1.9907 14 6 -1.1282 6.8036 -3.9077 15 7 -0.8874 6.4182 -5.1418 16 14 -2.8739 7.2062 -3.3788 17 1 -2.8771 7.6119 -1.9503 18 1 -3.3992 8.3183 -4.2110 19 1 -3.7332 6.0078 -3.5544 20 6 2.8499 8.0829 -2.0722 21 6 4.1849 8.1465 -2.8170 22 6 4.8362 9.5106 -2.5809 23 7 6.1183 9.5713 -3.2955 24 6 6.6597 10.9370 -3.2903 25 6 7.0832 8.6204 -2.7275 26 7 1.6664 2.3070 -0.9076 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2924 1.3238 1.7441 33 1 1.3041 4.4261 -2.4173 34 1 1.6095 7.2460 -4.2478 35 1 1.3651 5.5500 -3.7659 36 1 -1.6162 6.3433 -5.7775 37 1 2.1908 8.8692 -2.4402 38 1 3.0221 8.2231 -1.0051 39 1 4.8440 7.3601 -2.4490 40 1 4.0127 8.0062 -3.8841 41 1 4.1770 10.2966 -2.9491 42 1 5.0085 9.6512 -1.5137 43 1 6.8172 11.2614 -2.2617 44 1 7.6091 10.9533 -3.8255 45 1 5.9547 11.6091 -3.7794 46 1 6.6861 7.6084 -2.8074 47 1 8.0232 8.6857 -3.2752 48 1 7.2560 8.8610 -1.6785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444394359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:40 Heat of formation + Delta-G solvation = 18.771229 kcal Electronic energy + Delta-G solvation = -27559.511429 eV Core-core repulsion = 23776.575679 eV Total energy + Delta-G solvation = -3782.935749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.28301 -39.29183 -37.70467 -35.67111 -34.82450 -33.04804 -32.65561 -31.42779 -28.84968 -27.65807 -27.54977 -26.12469 -24.54715 -23.41142 -23.09769 -22.14109 -20.77821 -20.50445 -19.10581 -17.54551 -17.20315 -16.65970 -16.34412 -15.60938 -15.53184 -15.42137 -14.88024 -14.76109 -14.62760 -14.39991 -14.09549 -13.82331 -13.59192 -13.27966 -12.88472 -12.64669 -12.43143 -12.35547 -12.22317 -11.88741 -11.78909 -11.72307 -11.50386 -11.44269 -11.28986 -11.12943 -10.98516 -10.91547 -10.71247 -10.38261 -10.32773 -10.19571 -9.87400 -9.57579 -9.31040 -8.79495 -8.67751 -8.38049 -8.16762 -7.63270 -6.28912 -4.38226 1.18083 1.56481 2.27433 2.84897 2.99073 3.17531 3.26753 3.30753 3.65157 3.93443 4.21172 4.35727 4.80735 5.04460 5.05347 5.11500 5.14850 5.23549 5.34222 5.38061 5.45239 5.50617 5.59461 5.62613 5.63840 5.69306 5.76583 5.82029 5.84042 5.94708 5.95149 6.07165 6.16443 6.27743 6.34999 6.39701 6.46900 6.60130 6.68192 6.94218 6.98247 7.02016 7.03680 7.44898 7.65021 7.88520 8.04666 8.32102 8.67138 8.83540 9.31578 10.77565 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006935 B = 0.004134 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4036.305943 B = 6770.900614 C =10241.405443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.098 3.902 4 C -0.344 4.344 5 S 0.226 5.774 6 C 0.289 3.711 7 N -0.629 5.629 8 C 0.706 3.294 9 O -0.587 6.587 10 N -0.595 5.595 11 C 0.235 3.765 12 C -0.547 4.547 13 H 0.063 0.937 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.898 3.102 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.139 3.861 21 C -0.131 4.131 22 C 0.059 3.941 23 N -0.548 5.548 24 C 0.025 3.975 25 C 0.022 3.978 26 N -0.525 5.525 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.431 0.569 34 H 0.047 0.953 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.662 -2.142 7.318 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.035 4.035 4 C -0.484 4.484 5 S 0.475 5.525 6 C -0.080 4.080 7 N -0.282 5.282 8 C 0.407 3.593 9 O -0.468 6.468 10 N -0.326 5.326 11 C 0.115 3.885 12 C -0.585 4.585 13 H 0.082 0.918 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.207 1.207 20 C 0.014 3.986 21 C -0.170 4.170 22 C -0.069 4.069 23 N -0.272 5.272 24 C -0.123 4.123 25 C -0.126 4.126 26 N -0.249 5.249 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.184 0.816 33 H 0.274 0.726 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.082 0.918 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 11.238 -1.325 7.196 13.410 hybrid contribution -1.642 -0.468 0.405 1.755 sum 9.596 -1.794 7.602 12.373 Atomic orbital electron populations 1.21671 0.94520 1.01168 1.02860 1.20092 0.96535 0.89459 1.02394 1.19716 0.96417 0.96332 0.91027 1.27116 1.10927 1.02122 1.08282 1.84840 1.42932 1.04005 1.20673 1.23209 0.98466 0.90082 0.96227 1.42172 1.48732 1.07118 1.30212 1.15714 0.80543 0.80082 0.82997 1.90752 1.41718 1.81618 1.32695 1.47356 1.47186 1.08774 1.29312 1.19489 0.87701 0.97852 0.83416 1.21504 0.91399 1.47641 0.97960 0.91834 1.24943 0.99510 0.94473 0.94659 1.69920 1.32918 1.45891 1.03708 0.86425 0.83890 0.78225 0.78891 1.19652 1.20726 1.20707 1.21198 0.92921 0.83955 1.00478 1.21981 0.96658 0.96363 1.02040 1.22063 0.90421 0.98566 0.95861 1.61965 1.04034 1.06220 1.54956 1.22369 1.00458 0.89794 0.99706 1.22426 0.95751 0.97371 0.97059 1.66097 1.29270 0.99715 1.29828 0.91532 0.92733 0.92977 0.90582 0.90711 0.81580 0.72616 0.93500 0.95076 0.92336 0.89766 0.90733 0.91727 0.90748 0.90537 0.94729 0.95881 0.91621 0.91329 0.90876 0.91770 0.95731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.81 37.16 0.36 -1.37 16 2 C -0.04 -0.54 6.43 -27.88 -0.18 -0.72 16 3 C 0.10 1.52 6.08 -84.20 -0.51 1.01 16 4 C -0.34 -4.91 11.05 29.04 0.32 -4.59 16 5 S 0.23 3.73 20.21 -107.50 -2.17 1.56 16 6 C 0.29 5.48 8.19 -87.34 -0.72 4.77 16 7 N -0.63 -12.53 5.27 -17.47 -0.09 -12.62 16 8 C 0.71 14.31 8.24 -86.91 -0.72 13.59 16 9 O -0.59 -12.10 13.39 5.29 0.07 -12.03 16 10 N -0.59 -11.75 2.46 -180.81 -0.44 -12.20 16 11 C 0.24 5.27 4.92 -5.20 -0.03 5.25 16 12 C -0.55 -13.65 9.39 -34.44 -0.32 -13.97 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -23.74 13.29 55.43 0.74 -23.00 16 16 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.14 2.33 5.41 -4.05 -0.02 2.31 16 21 C -0.13 -1.96 5.46 -26.73 -0.15 -2.11 16 22 C 0.06 0.76 4.96 -3.83 -0.02 0.74 16 23 N -0.55 -6.78 5.02 -251.26 -1.26 -8.04 16 24 C 0.03 0.25 9.57 60.07 0.57 0.82 16 25 C 0.02 0.25 9.32 60.06 0.56 0.81 16 26 N -0.52 -9.67 10.39 -11.27 -0.12 -9.79 16 27 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.71 8.03 -51.92 -0.42 0.30 16 32 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 33 H 0.43 8.88 6.55 -40.82 -0.27 8.61 16 34 H 0.05 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.03 0.73 6.36 -51.93 -0.33 0.40 16 36 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 37 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 38 H 0.07 1.25 7.42 -51.93 -0.39 0.86 16 39 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 42 H 0.03 0.43 8.12 -51.92 -0.42 0.01 16 43 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 45 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 46 H 0.07 0.90 6.47 -51.93 -0.34 0.56 16 47 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 48 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 404.34 15.07 6.09 6.09 Total: -1.00 -28.10 404.34 -11.09 -39.19 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.94 Total: 7.37 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -0.94 Total: 8.20 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -1.18 Total: -65.65 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -2.17 Total: 1.56 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -28.10 -11.09 -39.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444394359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.962 kcal (2) G-P(sol) polarization free energy of solvation -28.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds