Wall clock time and date at job start Sat Apr 11 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50706 * 109.47189 * 2 1 4 4 C 1.33411 * 122.71339 * 124.99827 * 3 2 1 5 5 S 1.76180 * 108.06455 * 179.97438 * 4 3 2 6 6 C 1.70968 * 90.34107 * 359.97438 * 5 4 3 7 7 N 1.39005 * 124.94476 * 180.02562 * 6 5 4 8 8 C 1.34777 * 119.99666 * 0.02562 * 7 6 5 9 9 O 1.21583 * 120.00582 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 0.02562 * 10 8 7 12 12 C 1.50694 * 109.47248 * 90.00174 * 11 10 8 13 13 H 1.07999 * 119.99904 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00385 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99650 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00268 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47003 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47185 * 120.00431 * 16 14 12 19 19 H 1.48507 * 109.47178 * 240.00326 * 16 14 12 20 20 C 1.46493 * 119.99864 * 179.73002 * 10 8 7 21 21 C 1.53000 * 109.47637 * 90.00039 * 20 10 8 22 22 C 1.52994 * 109.47472 * 179.97438 * 21 20 10 23 23 N 1.46903 * 109.47180 * 179.97438 * 22 21 20 24 24 C 1.46906 * 110.99791 * 170.00152 * 23 22 21 25 25 C 1.46900 * 111.00164 * 293.95283 * 23 22 21 26 26 N 1.29625 * 110.11201 * 0.26459 * 6 5 4 27 27 H 1.08997 * 109.46427 * 60.00320 * 1 2 3 28 28 H 1.08994 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47022 * 300.00926 * 1 2 3 30 30 H 1.08998 * 109.47451 * 239.99216 * 2 1 3 31 31 H 1.09010 * 109.46635 * 119.99431 * 2 1 3 32 32 H 1.07996 * 125.97277 * 359.95162 * 4 3 2 33 33 H 0.96996 * 120.00447 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.47006 * 210.00121 * 11 10 8 35 35 H 1.09004 * 109.47665 * 329.99813 * 11 10 8 36 36 H 0.96998 * 120.00151 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.47192 * 209.99937 * 20 10 8 38 38 H 1.08996 * 109.47342 * 329.99648 * 20 10 8 39 39 H 1.09002 * 109.46747 * 300.00171 * 21 20 10 40 40 H 1.08996 * 109.47074 * 59.99445 * 21 20 10 41 41 H 1.08993 * 109.47409 * 300.00238 * 22 21 20 42 42 H 1.09008 * 109.47165 * 60.00188 * 22 21 20 43 43 H 1.09002 * 109.46994 * 60.00393 * 24 23 22 44 44 H 1.08998 * 109.46384 * 179.97438 * 24 23 22 45 45 H 1.08993 * 109.46962 * 300.00079 * 24 23 22 46 46 H 1.09006 * 109.47156 * 59.99975 * 25 23 22 47 47 H 1.08993 * 109.47504 * 179.97438 * 25 23 22 48 48 H 1.09001 * 109.47194 * 300.00317 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.8797 1.8860 0.9195 5 16 3.2076 3.5780 0.5541 6 6 2.1717 3.4962 -0.8035 7 7 1.9058 4.5525 -1.6670 8 6 2.4841 5.7525 -1.4618 9 8 3.2387 5.9110 -0.5217 10 7 2.2259 6.7770 -2.2988 11 6 1.3163 6.5862 -3.4311 12 6 -0.0921 6.9105 -3.0043 13 1 -0.2899 7.2266 -1.9907 14 6 -1.1282 6.8036 -3.9077 15 7 -0.8874 6.4182 -5.1418 16 14 -2.8739 7.2062 -3.3788 17 1 -2.8771 7.6119 -1.9503 18 1 -3.3992 8.3183 -4.2110 19 1 -3.7332 6.0078 -3.5544 20 6 2.8499 8.0829 -2.0722 21 6 4.1849 8.1465 -2.8170 22 6 4.8362 9.5106 -2.5809 23 7 6.1183 9.5713 -3.2955 24 6 6.6597 10.9370 -3.2903 25 6 7.0832 8.6204 -2.7275 26 7 1.6664 2.3070 -0.9076 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.2924 1.3238 1.7441 33 1 1.3041 4.4261 -2.4173 34 1 1.6095 7.2460 -4.2478 35 1 1.3651 5.5500 -3.7659 36 1 -1.6162 6.3433 -5.7775 37 1 2.1908 8.8692 -2.4402 38 1 3.0221 8.2231 -1.0051 39 1 4.8440 7.3601 -2.4490 40 1 4.0127 8.0062 -3.8841 41 1 4.1770 10.2966 -2.9491 42 1 5.0085 9.6512 -1.5137 43 1 6.8172 11.2614 -2.2617 44 1 7.6091 10.9533 -3.8255 45 1 5.9547 11.6091 -3.7794 46 1 6.6861 7.6084 -2.8074 47 1 8.0232 8.6857 -3.2752 48 1 7.2560 8.8610 -1.6785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444394359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:40 Heat of formation + Delta-G solvation = 2.963681 kcal Electronic energy + Delta-G solvation = -27560.196896 eV Core-core repulsion = 23776.575679 eV Total energy + Delta-G solvation = -3783.621216 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79392 -40.62058 -38.73132 -37.17769 -36.29033 -34.79340 -33.89995 -32.74682 -30.07303 -29.35043 -28.48205 -27.39295 -25.78482 -25.08373 -24.34828 -23.33583 -22.05913 -21.74019 -20.47190 -19.02471 -18.77521 -18.46960 -17.71337 -16.95031 -16.81008 -16.60445 -16.46368 -16.02867 -15.87968 -15.51642 -15.24709 -15.04664 -14.75917 -14.70078 -14.41193 -14.14380 -13.67227 -13.47561 -13.39199 -13.25686 -12.95042 -12.93525 -12.81958 -12.69570 -12.56871 -12.43469 -12.38833 -12.16402 -12.03067 -11.97672 -11.74858 -11.67038 -11.49958 -11.05132 -10.67658 -10.63207 -10.12498 -9.74256 -9.30374 -9.02742 -8.26134 -6.41654 -0.13591 0.23678 0.99935 1.37340 1.40185 1.43290 1.51481 1.63892 2.16576 2.35569 2.71697 3.04991 3.07655 3.56604 3.94092 4.11092 4.17408 4.23043 4.37524 4.39131 4.42826 4.46439 4.50343 4.62276 4.63069 4.67178 4.71732 4.77346 4.79375 4.81715 4.97966 5.00717 5.02857 5.05289 5.06778 5.09519 5.19542 5.28989 5.35753 5.39598 5.48493 5.65159 5.84746 5.94933 6.06622 6.13271 6.46689 6.72938 6.91645 7.21917 7.33015 8.79252 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006935 B = 0.004134 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4036.305943 B = 6770.900614 C =10241.405443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C 0.073 3.927 4 C -0.316 4.316 5 S 0.226 5.774 6 C 0.252 3.748 7 N -0.635 5.635 8 C 0.704 3.296 9 O -0.593 6.593 10 N -0.597 5.597 11 C 0.252 3.748 12 C -0.550 4.550 13 H 0.053 0.947 14 C 0.026 3.974 15 N -0.915 5.915 16 Si 0.955 3.045 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.281 1.281 20 C 0.138 3.862 21 C -0.116 4.116 22 C 0.066 3.934 23 N -0.565 5.565 24 C 0.025 3.975 25 C 0.024 3.976 26 N -0.541 5.541 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.207 0.793 33 H 0.423 0.577 34 H 0.035 0.965 35 H 0.020 0.980 36 H 0.269 0.731 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.029 0.971 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.079 0.921 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.255 -2.663 8.852 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.058 4.058 4 C -0.456 4.456 5 S 0.476 5.524 6 C -0.116 4.116 7 N -0.288 5.288 8 C 0.404 3.596 9 O -0.475 6.475 10 N -0.329 5.329 11 C 0.131 3.869 12 C -0.588 4.588 13 H 0.071 0.929 14 C -0.175 4.175 15 N -0.554 5.554 16 Si 0.781 3.219 17 H -0.197 1.197 18 H -0.200 1.200 19 H -0.207 1.207 20 C 0.015 3.985 21 C -0.155 4.155 22 C -0.063 4.063 23 N -0.290 5.290 24 C -0.123 4.123 25 C -0.125 4.125 26 N -0.266 5.266 27 H 0.056 0.944 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.127 0.873 32 H 0.223 0.777 33 H 0.264 0.736 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.098 0.902 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 11.852 -1.851 8.753 14.849 hybrid contribution -1.771 -0.406 -0.001 1.816 sum 10.081 -2.257 8.752 13.539 Atomic orbital electron populations 1.21644 0.94796 1.02352 1.01171 1.20248 0.96236 0.87465 1.04270 1.20338 0.97113 0.97495 0.90861 1.27519 1.09232 1.00553 1.08340 1.84713 1.42134 1.06064 1.19530 1.23426 1.00403 0.90279 0.97456 1.42125 1.48757 1.07536 1.30379 1.15771 0.80606 0.80226 0.82987 1.90737 1.42001 1.81940 1.32821 1.47348 1.47075 1.09812 1.28667 1.19097 0.87241 0.96707 0.83844 1.21657 0.92677 1.47123 0.97381 0.92850 1.25603 1.02742 0.94459 0.94693 1.70000 1.33927 1.46910 1.04531 0.85545 0.79961 0.78018 0.78385 1.19737 1.19970 1.20700 1.21343 0.93669 0.82649 1.00882 1.21791 0.95521 0.97653 1.00535 1.21961 0.90951 0.97044 0.96304 1.61952 1.04096 1.07768 1.55139 1.22422 1.01055 0.88378 1.00403 1.22416 0.96090 0.96397 0.97551 1.66117 1.29437 1.00032 1.30996 0.94435 0.90105 0.93417 0.90148 0.87306 0.77657 0.73578 0.94649 0.96241 0.92170 0.89562 0.90481 0.92853 0.92225 0.89763 0.94240 0.95200 0.90385 0.90882 0.92401 0.90217 0.95353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.81 71.98 0.71 -2.48 16 2 C -0.04 -0.91 6.43 29.85 0.19 -0.72 16 3 C 0.07 2.16 6.08 41.44 0.25 2.41 16 4 C -0.32 -8.21 11.05 66.73 0.74 -7.47 16 5 S 0.23 7.30 20.21 -56.49 -1.14 6.16 16 6 C 0.25 9.71 8.19 179.20 1.47 11.18 16 7 N -0.64 -26.28 5.27 -327.46 -1.73 -28.01 16 8 C 0.70 29.33 8.24 179.05 1.48 30.81 16 9 O -0.59 -24.81 13.39 -3.98 -0.05 -24.87 16 10 N -0.60 -24.35 2.46 -844.23 -2.07 -26.43 16 11 C 0.25 11.71 4.92 85.63 0.42 12.14 16 12 C -0.55 -28.02 9.39 25.60 0.24 -27.78 16 13 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 14 C 0.03 1.37 5.46 84.66 0.46 1.83 16 15 N -0.92 -49.72 13.29 21.45 0.28 -49.44 16 16 Si 0.96 41.85 29.54 68.60 2.03 43.88 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 C 0.14 4.71 5.41 86.38 0.47 5.18 16 21 C -0.12 -3.52 5.46 30.59 0.17 -3.36 16 22 C 0.07 1.64 4.96 86.30 0.43 2.07 16 23 N -0.57 -13.43 5.02 -948.84 -4.76 -18.19 16 24 C 0.03 0.46 9.57 127.69 1.22 1.68 16 25 C 0.02 0.52 9.32 127.69 1.19 1.71 16 26 N -0.54 -20.02 10.39 -189.58 -1.97 -21.99 16 27 H 0.04 1.04 8.07 -2.39 -0.02 1.02 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.11 1.60 8.03 -2.38 -0.02 1.59 16 32 H 0.21 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.42 18.39 6.55 -92.71 -0.61 17.79 16 34 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 35 H 0.02 0.96 6.36 -2.38 -0.02 0.95 16 36 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 37 H 0.09 2.89 8.07 -2.39 -0.02 2.87 16 38 H 0.08 2.60 7.42 -2.39 -0.02 2.58 16 39 H 0.05 1.74 6.55 -2.39 -0.02 1.72 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 42 H 0.04 0.95 8.12 -2.38 -0.02 0.93 16 43 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 45 H 0.07 1.25 8.12 -2.39 -0.02 1.23 16 46 H 0.06 1.43 6.47 -2.38 -0.02 1.41 16 47 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 48 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -60.81 404.34 0.36 -60.46 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.34 Total: 31.24 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 9.43 Total: 27.18 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -10.25 Total: -144.05 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.87 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: 7.30 SS G_CDS: -1.14 Total: 6.16 kcal Total: -60.81 0.36 -60.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444394359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.422 kcal (2) G-P(sol) polarization free energy of solvation -60.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds