Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 C 1.50695 * 109.47017 * 240.00150 * 2 1 3 5 5 H 1.08001 * 119.99928 * 240.07493 * 4 2 1 6 6 C 1.37879 * 120.00396 * 60.07512 * 4 2 1 7 7 N 1.31514 * 120.00480 * 193.40821 * 6 4 2 8 8 Si 1.86805 * 119.99756 * 13.40318 * 6 4 2 9 9 H 1.48501 * 109.47091 * 84.86684 * 8 6 4 10 10 H 1.48499 * 109.47208 * 204.87088 * 8 6 4 11 11 H 1.48503 * 109.46850 * 324.86725 * 8 6 4 12 12 C 1.53001 * 109.47135 * 119.99984 * 2 1 3 13 13 N 1.46502 * 109.47165 * 300.00031 * 12 2 1 14 14 C 1.34772 * 119.99765 * 180.02562 * 13 12 2 15 15 O 1.21548 * 120.00323 * 0.02562 * 14 13 12 16 16 C 1.47866 * 119.99757 * 179.97438 * 14 13 12 17 17 C 1.39621 * 120.10899 * 359.97438 * 16 14 13 18 18 C 1.37984 * 120.00198 * 179.97438 * 17 16 14 19 19 C 1.38242 * 120.23226 * 0.02562 * 18 17 16 20 20 C 1.38985 * 120.21861 * 0.27640 * 19 18 17 21 21 N 1.39789 * 120.00598 * 179.70204 * 20 19 18 22 22 C 1.39081 * 119.99854 * 221.77818 * 21 20 19 23 23 C 1.39327 * 120.09645 * 7.63940 * 22 21 20 24 24 N 1.31923 * 119.89123 * 179.97438 * 23 22 21 25 25 C 1.32277 * 120.08638 * 359.97438 * 24 23 22 26 26 C 1.38171 * 120.18868 * 0.02562 * 25 24 23 27 27 N 1.32238 * 120.11501 * 359.72023 * 26 25 24 28 28 C 1.38693 * 119.98746 * 359.44692 * 20 19 18 29 29 H 1.09004 * 109.47138 * 308.70209 * 1 2 3 30 30 H 1.08997 * 109.47204 * 68.70335 * 1 2 3 31 31 H 1.09000 * 109.47301 * 188.70284 * 1 2 3 32 32 H 1.09004 * 109.47344 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47126 * 300.00163 * 3 2 1 34 34 H 1.08997 * 109.46981 * 60.00427 * 3 2 1 35 35 H 0.96993 * 120.00255 * 180.02562 * 7 6 4 36 36 H 1.08995 * 109.46947 * 179.97438 * 12 2 1 37 37 H 1.09003 * 109.46911 * 59.99869 * 12 2 1 38 38 H 0.96998 * 119.99989 * 0.02562 * 13 12 2 39 39 H 1.08001 * 119.99574 * 0.02562 * 17 16 14 40 40 H 1.08004 * 119.88568 * 179.97438 * 18 17 16 41 41 H 1.07999 * 119.89394 * 179.97438 * 19 18 17 42 42 H 0.96997 * 119.99808 * 41.78332 * 21 20 19 43 43 H 1.08002 * 120.05473 * 359.97438 * 23 22 21 44 44 H 1.07997 * 119.90267 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.94324 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.10999 * 180.27679 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6522 -1.5892 -1.1314 6 6 1.7005 -0.2384 -2.4828 7 7 1.9068 -0.9876 -3.5438 8 14 0.9578 1.4651 -2.6723 9 1 2.0448 2.4751 -2.7327 10 1 0.1601 1.5209 -3.9236 11 1 0.0781 1.7535 -1.5112 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5773 -1.4785 3.7810 16 6 1.3853 0.2065 4.8768 17 6 0.5829 1.3422 4.7513 18 6 0.1241 1.9910 5.8795 19 6 0.4565 1.5209 7.1363 20 6 1.2599 0.3949 7.2721 21 7 1.5983 -0.0729 8.5452 22 6 2.8941 -0.5066 8.8049 23 6 3.8945 -0.3291 7.8515 24 7 5.1222 -0.7415 8.1023 25 6 5.4039 -1.3221 9.2570 26 6 4.4144 -1.4998 10.2049 27 7 3.1822 -1.0849 9.9636 28 6 1.7212 -0.2676 6.1444 29 1 -0.3633 0.6426 0.8020 30 1 -0.3633 0.3732 -0.9575 31 1 -0.3634 -1.0158 0.1555 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6737 -0.6554 -4.4248 36 1 3.1299 -0.7216 1.2490 37 1 1.6766 -1.7489 1.2492 38 1 0.9937 0.7578 2.3564 39 1 0.3206 1.7124 3.7713 40 1 -0.4961 2.8696 5.7802 41 1 0.0948 2.0332 8.0156 42 1 0.9295 -0.0952 9.2473 43 1 3.6652 0.1453 6.9087 44 1 6.4101 -1.6582 9.4593 45 1 4.6489 -1.9740 11.1465 46 1 2.3419 -1.1454 6.2477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457988902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = 44.801595 kcal Electronic energy + Delta-G solvation = -28555.447691 eV Core-core repulsion = 24638.196751 eV Total energy + Delta-G solvation = -3917.250939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.29391 -41.30755 -39.94145 -38.39112 -37.04619 -35.20957 -34.95567 -33.53053 -32.41079 -31.63112 -30.02985 -28.01447 -27.72035 -26.99304 -25.91607 -24.98424 -24.47548 -22.94087 -21.60263 -20.99912 -19.59082 -19.09541 -18.21494 -18.11451 -17.76275 -17.33839 -16.92150 -16.90256 -16.47562 -16.40782 -16.15687 -15.66365 -15.34007 -15.05150 -14.95360 -14.75535 -14.64808 -14.34429 -14.03085 -13.97329 -13.76627 -13.66977 -13.03086 -12.89423 -12.77499 -12.62667 -12.39104 -12.35823 -12.16939 -11.92101 -11.81924 -11.74794 -11.16314 -10.98423 -10.62433 -10.37380 -10.29490 -10.22912 -10.08491 -9.91684 -8.76596 -8.29264 -6.31917 -0.31033 -0.15885 0.08755 0.43371 1.37381 1.39566 1.52543 1.69148 1.83186 2.18682 2.36194 2.69493 2.83499 3.06887 3.34267 3.42576 3.44435 3.64195 3.82870 4.01951 4.06599 4.13416 4.16178 4.25772 4.31182 4.38267 4.41300 4.49278 4.56673 4.75333 4.80960 4.83243 4.86972 4.93816 5.06248 5.08902 5.15945 5.23141 5.31799 5.35059 5.39697 5.51106 5.55478 5.71994 5.80207 5.88430 6.20733 6.29940 6.48399 6.56459 6.72772 6.86801 7.20123 7.33066 8.88044 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019905 B = 0.002390 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.329482 B =11713.447123 C =12636.014764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.519 4.519 5 H 0.024 0.976 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.941 3.059 9 H -0.282 1.282 10 H -0.315 1.315 11 H -0.193 1.193 12 C 0.156 3.844 13 N -0.700 5.700 14 C 0.545 3.455 15 O -0.590 6.590 16 C -0.119 4.119 17 C -0.096 4.096 18 C -0.085 4.085 19 C -0.103 4.103 20 C 0.146 3.854 21 N -0.646 5.646 22 C 0.336 3.664 23 C -0.019 4.019 24 N -0.436 5.436 25 C -0.016 4.016 26 C 0.106 3.894 27 N -0.507 5.507 28 C -0.110 4.110 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.264 0.736 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.413 0.587 39 H 0.151 0.849 40 H 0.177 0.823 41 H 0.166 0.834 42 H 0.428 0.572 43 H 0.158 0.842 44 H 0.199 0.801 45 H 0.214 0.786 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 10.566 30.515 32.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.557 4.557 5 H 0.043 0.957 6 C -0.183 4.183 7 N -0.588 5.588 8 Si 0.770 3.230 9 H -0.209 1.209 10 H -0.245 1.245 11 H -0.116 1.116 12 C 0.032 3.968 13 N -0.352 5.352 14 C 0.333 3.667 15 O -0.471 6.471 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.103 4.103 19 C -0.123 4.123 20 C 0.050 3.950 21 N -0.274 5.274 22 C 0.100 3.900 23 C -0.185 4.185 24 N -0.150 5.150 25 C -0.176 4.176 26 C -0.055 4.055 27 N -0.229 5.229 28 C -0.132 4.132 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.252 0.748 39 H 0.169 0.831 40 H 0.194 0.806 41 H 0.184 0.816 42 H 0.268 0.732 43 H 0.175 0.825 44 H 0.215 0.785 45 H 0.230 0.770 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.699 9.870 30.291 32.203 hybrid contribution 0.012 -0.108 -0.992 0.998 sum -4.687 9.762 29.299 31.236 Atomic orbital electron populations 1.22298 0.95805 1.00787 1.01333 1.18656 0.93986 0.93222 0.91461 1.22270 1.01010 0.96605 1.00475 1.21025 1.31957 1.12043 0.90678 0.95745 1.25921 0.95626 1.01663 0.95136 1.70117 1.50519 1.38576 0.99540 0.86423 0.79506 0.79498 0.77564 1.20900 1.24485 1.11649 1.21088 0.97427 0.95078 0.83204 1.45915 1.52601 1.31954 1.04723 1.18840 0.79798 0.83678 0.84359 1.90756 1.40337 1.28543 1.87507 1.19628 1.02447 0.98692 0.91517 1.21650 0.95187 0.93183 1.01540 1.21396 0.98514 1.00296 0.90090 1.21535 0.98105 0.92497 1.00201 1.17502 0.99757 0.94773 0.82960 1.41583 1.07912 1.66559 1.11327 1.19324 0.87144 0.92106 0.91436 1.23434 0.89140 1.04510 1.01414 1.68289 1.19619 1.06174 1.20876 1.24095 1.03350 1.00302 0.89888 1.24199 0.86599 0.93313 1.01370 1.68009 1.22946 1.13065 1.18881 1.21062 1.01461 0.99274 0.91389 0.91121 0.93126 0.94173 0.93622 0.94452 0.90475 0.92693 0.93942 0.94104 0.74800 0.83094 0.80601 0.81647 0.73209 0.82457 0.78463 0.76978 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 7.52 71.98 0.54 -4.77 16 2 C 0.03 1.17 0.50 -52.93 -0.03 1.14 16 3 C -0.15 -5.31 7.60 71.98 0.55 -4.77 16 4 C -0.52 -28.70 8.62 25.60 0.22 -28.48 16 5 H 0.02 1.55 7.99 -2.91 -0.02 1.52 16 6 C 0.01 0.77 5.33 84.66 0.45 1.23 16 7 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 8 Si 0.94 41.71 22.77 68.60 1.56 43.27 16 9 H -0.28 -12.26 7.09 99.48 0.71 -11.56 16 10 H -0.32 -14.49 7.11 99.48 0.71 -13.79 16 11 H -0.19 -6.98 4.59 99.48 0.46 -6.53 16 12 C 0.16 6.30 4.49 86.38 0.39 6.69 16 13 N -0.70 -21.62 4.95 -465.96 -2.31 -23.93 16 14 C 0.54 18.09 7.77 86.79 0.67 18.76 16 15 O -0.59 -25.42 16.34 -3.87 -0.06 -25.48 16 16 C -0.12 -2.88 5.87 -20.10 -0.12 -3.00 16 17 C -0.10 -1.46 9.54 22.54 0.22 -1.24 16 18 C -0.08 -0.79 10.02 22.21 0.22 -0.57 16 19 C -0.10 -1.05 9.96 22.45 0.22 -0.83 16 20 C 0.15 2.47 5.85 38.16 0.22 2.69 16 21 N -0.65 -10.49 5.49 -185.24 -1.02 -11.51 16 22 C 0.34 7.12 7.44 133.00 0.99 8.11 16 23 C -0.02 -0.47 9.22 84.94 0.78 0.31 16 24 N -0.44 -11.04 10.49 -194.67 -2.04 -13.08 16 25 C -0.02 -0.28 11.21 84.61 0.95 0.67 16 26 C 0.11 1.52 11.21 84.62 0.95 2.47 16 27 N -0.51 -9.75 10.53 -192.57 -2.03 -11.78 16 28 C -0.11 -2.65 6.91 22.67 0.16 -2.49 16 29 H 0.07 1.90 7.11 -2.39 -0.02 1.88 16 30 H 0.05 1.95 4.03 -2.39 -0.01 1.94 16 31 H 0.04 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 1.40 2.44 -2.38 -0.01 1.39 16 34 H 0.08 2.04 6.86 -2.39 -0.02 2.03 16 35 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.41 9.60 4.28 -92.71 -0.40 9.20 16 39 H 0.15 1.64 6.40 -2.91 -0.02 1.62 16 40 H 0.18 0.35 8.06 -2.91 -0.02 0.33 16 41 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 42 H 0.43 4.91 8.95 -92.71 -0.83 4.08 16 43 H 0.16 4.19 5.38 -2.91 -0.02 4.18 16 44 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 46 H 0.11 3.30 6.27 -2.91 -0.02 3.28 16 Total: -1.00 -81.98 365.18 1.37 -80.61 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: -0.42 Total: 24.76 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 7.39 Total: -4.07 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -7.09 Total: -119.08 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.06 Total: -25.48 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 1.56 Total: 43.27 kcal Total: -81.98 1.37 -80.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.409 kcal (2) G-P(sol) polarization free energy of solvation -81.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds