Wall clock time and date at job start Sat Apr 11 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52988 * 109.47590 * 239.99720 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46505 * 119.99722 * 179.72257 * 8 6 5 10 10 H 1.09008 * 109.46861 * 35.00772 * 9 8 6 11 11 C 1.52999 * 109.46803 * 155.00095 * 9 8 6 12 12 C 1.53002 * 109.47371 * 295.00127 * 11 9 8 13 13 C 1.50696 * 109.47086 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00076 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00031 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00225 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99986 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47153 * 90.00181 * 17 15 13 19 19 H 1.48498 * 109.47143 * 210.00038 * 17 15 13 20 20 H 1.48491 * 109.47107 * 329.99899 * 17 15 13 21 21 C 1.50701 * 109.47491 * 275.00673 * 9 8 6 22 22 O 1.21284 * 119.99869 * 359.97438 * 21 9 8 23 23 N 1.34770 * 119.99725 * 180.02562 * 21 9 8 24 24 C 1.39898 * 120.00018 * 179.97438 * 23 21 9 25 25 N 1.33368 * 126.25250 * 359.68324 * 24 23 21 26 26 N 1.28571 * 109.89857 * 179.85243 * 25 24 23 27 27 N 1.28942 * 109.61776 * 0.42096 * 26 25 24 28 28 H 0.97005 * 126.47187 * 179.76065 * 27 26 25 29 29 N 1.31656 * 126.25695 * 179.97438 * 24 23 21 30 30 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 31 31 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 32 32 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 35 35 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 36 36 H 1.09001 * 109.47346 * 300.00043 * 4 2 1 37 37 H 1.09005 * 109.47300 * 60.00004 * 4 2 1 38 38 H 1.09004 * 109.47621 * 180.02562 * 4 2 1 39 39 H 0.97000 * 120.00483 * 359.73141 * 8 6 5 40 40 H 1.09003 * 109.47199 * 55.00642 * 11 9 8 41 41 H 1.09002 * 109.47200 * 175.00483 * 11 9 8 42 42 H 1.08994 * 109.47635 * 300.00376 * 12 11 9 43 43 H 1.09007 * 109.46673 * 60.00520 * 12 11 9 44 44 H 0.96998 * 120.00388 * 180.02562 * 16 15 13 45 45 H 0.97003 * 120.00700 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6643 -4.0633 2.5893 10 1 1.6183 -4.5485 1.6142 11 6 2.6888 -4.7825 3.4690 12 6 4.0369 -4.8302 2.7470 13 6 5.0462 -5.5380 3.6138 14 1 4.7551 -5.9165 4.5826 15 6 6.3412 -5.7026 3.1702 16 7 7.2219 -6.3208 3.9264 17 14 6.8449 -5.0474 1.4949 18 1 7.3339 -3.6523 1.6356 19 1 7.9269 -5.8971 0.9360 20 1 5.6744 -5.0720 0.5815 21 6 0.3087 -4.1237 3.2448 22 8 -0.2675 -3.0986 3.5418 23 7 -0.2629 -5.3168 3.5019 24 6 -1.5211 -5.3730 4.1110 25 7 -2.2596 -4.3303 4.4930 26 7 -3.3606 -4.7414 5.0143 27 7 -3.3887 -6.0305 5.0060 28 1 -4.1030 -6.5938 5.3428 29 7 -2.1901 -6.4649 4.4166 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2491 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7216 -1.2488 39 1 2.6225 -2.2349 3.0862 40 1 2.7998 -4.2452 4.4109 41 1 2.3473 -5.7983 3.6682 42 1 3.9260 -5.3674 1.8052 43 1 4.3785 -3.8143 2.5479 44 1 8.1331 -6.4362 3.6145 45 1 0.1981 -6.1367 3.2648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496322606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:00 Heat of formation + Delta-G solvation = 15.583977 kcal Electronic energy + Delta-G solvation = -30405.552689 eV Core-core repulsion = 26076.185515 eV Total energy + Delta-G solvation = -4329.367174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.38604 -40.87657 -39.93901 -37.39341 -35.59836 -35.46242 -34.10857 -33.24343 -33.11123 -32.20008 -31.26650 -28.23359 -27.44847 -27.37755 -24.77791 -24.56147 -23.35164 -22.11002 -20.94273 -20.47491 -19.96890 -18.91210 -18.14291 -17.99838 -17.17058 -16.86690 -16.54692 -16.47450 -15.82354 -15.29960 -14.94084 -14.51913 -14.43625 -14.26937 -14.12244 -13.91845 -13.51670 -13.15469 -12.77708 -12.55323 -12.34135 -12.28587 -12.23901 -11.91819 -11.91207 -11.83370 -11.50518 -11.37373 -11.30635 -11.11091 -11.04446 -10.95153 -10.58032 -10.33342 -10.28059 -9.98272 -9.92914 -9.85259 -9.40514 -9.35242 -9.04460 -8.63887 -6.14695 -4.14932 0.72765 1.54542 1.88005 2.21194 2.65181 2.77122 3.05479 3.25020 3.33608 3.36079 3.99428 4.20947 4.32508 4.36286 4.69358 4.74105 4.80801 4.88088 5.00236 5.15395 5.18611 5.24507 5.41260 5.49528 5.58583 5.64341 5.72619 5.83242 5.84651 5.93806 6.01267 6.10774 6.20589 6.29360 6.34128 6.42858 6.47965 6.61437 6.87587 7.04532 7.15867 7.52969 7.63976 7.83650 8.09946 8.38629 8.51163 8.88585 9.46774 10.98165 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006427 B = 0.004664 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4355.441896 B = 6002.331086 C = 9879.655556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.661 3.339 7 O -0.571 6.571 8 N -0.681 5.681 9 C 0.156 3.844 10 H 0.125 0.875 11 C -0.110 4.110 12 C -0.011 4.011 13 C -0.526 4.526 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.877 3.123 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.505 3.495 22 O -0.468 6.468 23 N -0.621 5.621 24 C 0.434 3.566 25 N -0.280 5.280 26 N 0.018 4.982 27 N -0.296 5.296 28 H 0.470 0.530 29 N -0.321 5.321 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.415 0.585 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.264 0.736 45 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.956 6.407 -4.621 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.275 6.275 6 C 0.415 3.585 7 O -0.461 6.461 8 N -0.340 5.340 9 C 0.047 3.953 10 H 0.143 0.857 11 C -0.148 4.148 12 C -0.048 4.048 13 C -0.564 4.564 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C 0.289 3.711 22 O -0.334 6.334 23 N -0.278 5.278 24 C 0.062 3.938 25 N -0.162 5.162 26 N 0.021 4.979 27 N -0.145 5.145 28 H 0.325 0.675 29 N -0.173 5.173 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.252 0.748 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -17.880 7.203 -4.688 19.838 hybrid contribution 0.766 -0.624 -0.641 1.178 sum -17.114 6.580 -5.329 19.094 Atomic orbital electron populations 1.22499 0.94021 1.05163 1.02236 1.22041 0.94336 0.91473 0.82191 1.21854 1.02323 0.92633 1.02952 1.22528 1.01718 1.03578 0.96330 1.86304 1.71534 1.23447 1.46253 1.17946 0.78092 0.80469 0.82026 1.90867 1.41106 1.70365 1.43731 1.44255 1.54430 1.11485 1.23780 1.21061 0.89705 0.82179 1.02344 0.85728 1.21932 0.95245 0.99354 0.98267 1.19592 0.91455 0.97391 0.96392 1.21025 0.93831 1.37188 1.04370 0.90791 1.24990 0.96524 0.94539 0.97063 1.69901 1.04142 1.42331 1.37351 0.86831 0.78648 0.79168 0.84975 1.20200 1.21350 1.18910 1.21959 0.88420 0.82207 0.78474 1.90830 1.62569 1.32605 1.47347 1.42944 1.13163 1.12085 1.59651 1.21749 0.90079 0.87207 0.94717 1.75755 0.98810 1.25037 1.16604 1.78452 1.14394 0.94876 1.10213 1.50715 1.16030 1.04671 1.43074 0.67506 1.78851 0.96284 1.19064 1.23114 0.92105 0.91447 0.89335 0.91405 0.90316 0.91457 0.89273 0.91345 0.92048 0.74805 0.90666 0.89875 0.96005 0.96327 0.92582 0.72810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 2 C 0.14 1.72 1.13 -90.62 -0.10 1.62 16 3 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 4 C -0.18 -2.25 8.37 37.15 0.31 -1.94 16 5 O -0.36 -5.50 9.94 -40.32 -0.40 -5.90 16 6 C 0.66 10.94 7.89 54.06 0.43 11.37 16 7 O -0.57 -10.16 11.54 -19.28 -0.22 -10.38 16 8 N -0.68 -10.55 4.06 -59.86 -0.24 -10.79 16 9 C 0.16 2.28 2.38 -69.08 -0.16 2.12 16 10 H 0.13 1.78 7.58 -51.92 -0.39 1.38 16 11 C -0.11 -1.73 4.64 -26.73 -0.12 -1.85 16 12 C -0.01 -0.22 3.93 -27.88 -0.11 -0.33 16 13 C -0.53 -13.54 9.66 -34.44 -0.33 -13.88 16 14 H 0.07 2.04 7.99 -52.48 -0.42 1.62 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -26.34 13.96 55.43 0.77 -25.56 16 17 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 20 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 21 C 0.51 7.67 7.16 -10.99 -0.08 7.59 16 22 O -0.47 -8.62 15.05 5.55 0.08 -8.53 16 23 N -0.62 -7.98 5.30 -12.77 -0.07 -8.05 16 24 C 0.43 6.09 8.97 -320.54 -2.88 3.22 16 25 N -0.28 -4.38 10.56 30.07 0.32 -4.06 16 26 N 0.02 0.23 13.43 60.35 0.81 1.04 16 27 N -0.30 -2.73 8.45 60.35 0.51 -2.22 16 28 H 0.47 1.93 8.96 -331.94 -2.98 -1.04 16 29 N -0.32 -3.79 12.89 30.08 0.39 -3.40 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.42 5.96 8.71 -40.82 -0.36 5.60 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.16 7.43 -51.93 -0.39 0.78 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 43 H 0.02 0.38 7.18 -51.93 -0.37 0.01 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.43 4.25 8.18 -40.82 -0.33 3.91 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -35.35 378.65 -8.29 -43.64 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -8.77 Total: 5.83 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -2.51 Total: 6.78 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 2.49 Total: -53.04 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -0.54 Total: -24.82 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.35 -8.29 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496322606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.227 kcal (2) G-P(sol) polarization free energy of solvation -35.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds