Wall clock time and date at job start Sat Apr 11 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47008 * 2 1 4 4 C 1.52988 * 109.47590 * 239.99720 * 2 1 3 5 5 O 1.45202 * 109.46964 * 119.99510 * 2 1 3 6 6 C 1.34638 * 116.99776 * 60.00058 * 5 2 1 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 2 9 9 C 1.46505 * 119.99722 * 179.72257 * 8 6 5 10 10 H 1.09008 * 109.46861 * 35.00772 * 9 8 6 11 11 C 1.52999 * 109.46803 * 155.00095 * 9 8 6 12 12 C 1.53002 * 109.47371 * 295.00127 * 11 9 8 13 13 C 1.50696 * 109.47086 * 179.97438 * 12 11 9 14 14 H 1.08007 * 120.00076 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00031 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00225 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99986 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47153 * 90.00181 * 17 15 13 19 19 H 1.48498 * 109.47143 * 210.00038 * 17 15 13 20 20 H 1.48491 * 109.47107 * 329.99899 * 17 15 13 21 21 C 1.50701 * 109.47491 * 275.00673 * 9 8 6 22 22 O 1.21284 * 119.99869 * 359.97438 * 21 9 8 23 23 N 1.34770 * 119.99725 * 180.02562 * 21 9 8 24 24 C 1.39898 * 120.00018 * 179.97438 * 23 21 9 25 25 N 1.33368 * 126.25250 * 359.68324 * 24 23 21 26 26 N 1.28571 * 109.89857 * 179.85243 * 25 24 23 27 27 N 1.28942 * 109.61776 * 0.42096 * 26 25 24 28 28 H 0.97005 * 126.47187 * 179.76065 * 27 26 25 29 29 N 1.31656 * 126.25695 * 179.97438 * 24 23 21 30 30 H 1.08997 * 109.47363 * 300.00806 * 1 2 3 31 31 H 1.09005 * 109.46795 * 60.00585 * 1 2 3 32 32 H 1.09001 * 109.46811 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46984 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.46584 * 299.99377 * 3 2 1 35 35 H 1.08998 * 109.47272 * 59.99708 * 3 2 1 36 36 H 1.09001 * 109.47346 * 300.00043 * 4 2 1 37 37 H 1.09005 * 109.47300 * 60.00004 * 4 2 1 38 38 H 1.09004 * 109.47621 * 180.02562 * 4 2 1 39 39 H 0.97000 * 120.00483 * 359.73141 * 8 6 5 40 40 H 1.09003 * 109.47199 * 55.00642 * 11 9 8 41 41 H 1.09002 * 109.47200 * 175.00483 * 11 9 8 42 42 H 1.08994 * 109.47635 * 300.00376 * 12 11 9 43 43 H 1.09007 * 109.46673 * 60.00520 * 12 11 9 44 44 H 0.96998 * 120.00388 * 180.02562 * 16 15 13 45 45 H 0.97003 * 120.00700 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9516 -2.5096 0.5037 8 7 2.0630 -2.6638 2.4199 9 6 1.6643 -4.0633 2.5893 10 1 1.6183 -4.5485 1.6142 11 6 2.6888 -4.7825 3.4690 12 6 4.0369 -4.8302 2.7470 13 6 5.0462 -5.5380 3.6138 14 1 4.7551 -5.9165 4.5826 15 6 6.3412 -5.7026 3.1702 16 7 7.2219 -6.3208 3.9264 17 14 6.8449 -5.0474 1.4949 18 1 7.3339 -3.6523 1.6356 19 1 7.9269 -5.8971 0.9360 20 1 5.6744 -5.0720 0.5815 21 6 0.3087 -4.1237 3.2448 22 8 -0.2675 -3.0986 3.5418 23 7 -0.2629 -5.3168 3.5019 24 6 -1.5211 -5.3730 4.1110 25 7 -2.2596 -4.3303 4.4930 26 7 -3.3606 -4.7414 5.0143 27 7 -3.3887 -6.0305 5.0060 28 1 -4.1030 -6.5938 5.3428 29 7 -2.1901 -6.4649 4.4166 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2491 37 1 1.6768 -0.2075 -2.1392 38 1 3.1301 -0.7216 -1.2488 39 1 2.6225 -2.2349 3.0862 40 1 2.7998 -4.2452 4.4109 41 1 2.3473 -5.7983 3.6682 42 1 3.9260 -5.3674 1.8052 43 1 4.3785 -3.8143 2.5479 44 1 8.1331 -6.4362 3.6145 45 1 0.1981 -6.1367 3.2648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496322606.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:59 Heat of formation + Delta-G solvation = -10.207719 kcal Electronic energy + Delta-G solvation = -30406.671101 eV Core-core repulsion = 26076.185515 eV Total energy + Delta-G solvation = -4330.485585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.37334 -42.06243 -41.09781 -38.53267 -36.89641 -36.63765 -35.28893 -34.78466 -34.22684 -33.32608 -32.78011 -29.73676 -28.33154 -28.26782 -26.14796 -25.72798 -24.51810 -23.25507 -22.38169 -21.71956 -21.09591 -19.92561 -19.33655 -19.23153 -18.71925 -17.98580 -17.83439 -17.57135 -16.98164 -16.41920 -16.34548 -16.05963 -15.60679 -15.45259 -15.18491 -15.14622 -14.74654 -14.64760 -14.36644 -13.77221 -13.33157 -13.30359 -13.14338 -13.13461 -12.92205 -12.88752 -12.83465 -12.69665 -12.53133 -12.30636 -12.24389 -11.96368 -11.93164 -11.87629 -11.65454 -11.40369 -11.34105 -11.27462 -11.11478 -10.70965 -10.45582 -10.28959 -8.23354 -6.26340 -0.23336 0.60174 0.76746 1.14646 1.40487 1.43426 1.52561 1.63802 1.66400 1.90850 2.40208 2.94512 3.12418 3.14039 3.26632 3.68575 3.78192 3.80870 3.83594 3.97641 4.02014 4.14872 4.47359 4.58084 4.64127 4.68601 4.77724 4.79318 4.86553 4.90419 4.96288 5.01304 5.02036 5.19109 5.31959 5.37947 5.42979 5.53489 5.56323 5.68834 5.69399 5.88119 6.31784 6.33390 6.71189 6.83081 7.10845 7.30197 7.38508 8.92826 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.006427 B = 0.004664 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4355.441896 B = 6002.331086 C = 9879.655556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.656 3.344 7 O -0.587 6.587 8 N -0.683 5.683 9 C 0.166 3.834 10 H 0.134 0.866 11 C -0.097 4.097 12 C -0.009 4.009 13 C -0.523 4.523 14 H 0.043 0.957 15 C 0.010 3.990 16 N -0.950 5.950 17 Si 0.938 3.062 18 H -0.272 1.272 19 H -0.290 1.290 20 H -0.245 1.245 21 C 0.512 3.488 22 O -0.502 6.502 23 N -0.609 5.609 24 C 0.419 3.581 25 N -0.324 5.324 26 N 0.016 4.984 27 N -0.260 5.260 28 H 0.492 0.508 29 N -0.313 5.313 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.419 0.581 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.028 0.972 43 H 0.022 0.978 44 H 0.264 0.736 45 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.193 7.073 -6.088 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.086 3.914 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.410 3.590 7 O -0.478 6.478 8 N -0.342 5.342 9 C 0.058 3.942 10 H 0.151 0.849 11 C -0.135 4.135 12 C -0.046 4.046 13 C -0.561 4.561 14 H 0.061 0.939 15 C -0.187 4.187 16 N -0.591 5.591 17 Si 0.763 3.237 18 H -0.197 1.197 19 H -0.217 1.217 20 H -0.168 1.168 21 C 0.296 3.704 22 O -0.371 6.371 23 N -0.268 5.268 24 C 0.047 3.953 25 N -0.205 5.205 26 N 0.019 4.981 27 N -0.115 5.115 28 H 0.352 0.648 29 N -0.166 5.166 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.047 0.953 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -19.157 7.844 -6.146 21.594 hybrid contribution 1.008 -0.912 -0.091 1.362 sum -18.149 6.932 -6.237 20.405 Atomic orbital electron populations 1.22441 0.94077 1.03493 1.03380 1.22466 0.94520 0.92869 0.81505 1.21888 1.02420 0.90555 1.04358 1.22484 1.01606 1.02332 0.97307 1.86319 1.71613 1.22792 1.47620 1.18111 0.77978 0.80925 0.82004 1.90860 1.41771 1.70832 1.44333 1.44334 1.54372 1.11764 1.23719 1.20932 0.89096 0.81905 1.02310 0.84876 1.21737 0.93285 1.00795 0.97719 1.19512 0.92372 0.96699 0.96021 1.21418 0.94836 1.36114 1.03727 0.93887 1.25853 0.96843 0.95154 1.00848 1.70051 1.04639 1.44805 1.39613 0.85841 0.78715 0.78403 0.80781 1.19728 1.21665 1.16846 1.21898 0.88317 0.82297 0.77879 1.90820 1.63457 1.33949 1.48839 1.42727 1.13008 1.12031 1.59024 1.21864 0.90494 0.87402 0.95551 1.75733 0.99971 1.26514 1.18312 1.78390 1.13704 0.95790 1.10248 1.50771 1.15665 1.04249 1.40775 0.64839 1.78822 0.96665 1.18403 1.22738 0.92524 0.88721 0.92299 0.91260 0.87588 0.91375 0.91856 0.88719 0.92098 0.74375 0.90811 0.87943 0.95329 0.95974 0.92715 0.71195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.19 8.37 71.98 0.60 -3.59 16 2 C 0.12 2.91 1.13 -10.80 -0.01 2.89 16 3 C -0.14 -2.26 8.85 71.98 0.64 -1.63 16 4 C -0.18 -4.11 8.37 71.98 0.60 -3.50 16 5 O -0.37 -11.00 9.94 -55.47 -0.55 -11.55 16 6 C 0.66 21.43 7.89 129.79 1.02 22.45 16 7 O -0.59 -20.78 11.54 19.80 0.23 -20.55 16 8 N -0.68 -20.69 4.06 -573.70 -2.33 -23.02 16 9 C 0.17 4.69 2.38 44.24 0.11 4.79 16 10 H 0.13 3.58 7.58 -2.38 -0.02 3.56 16 11 C -0.10 -2.93 4.64 30.59 0.14 -2.79 16 12 C -0.01 -0.34 3.93 29.85 0.12 -0.22 16 13 C -0.52 -26.93 9.66 25.60 0.25 -26.68 16 14 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 15 C 0.01 0.55 5.47 84.65 0.46 1.01 16 16 N -0.95 -56.82 13.96 21.45 0.30 -56.52 16 17 Si 0.94 41.96 27.47 68.60 1.88 43.84 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.25 -10.09 6.54 99.48 0.65 -9.44 16 21 C 0.51 15.19 7.16 87.66 0.63 15.82 16 22 O -0.50 -18.53 15.05 -3.04 -0.05 -18.58 16 23 N -0.61 -15.00 5.30 -312.70 -1.66 -16.65 16 24 C 0.42 11.31 8.97 260.69 2.34 13.64 16 25 N -0.32 -9.96 10.56 -58.77 -0.62 -10.58 16 26 N 0.02 0.38 13.43 37.02 0.50 0.88 16 27 N -0.26 -4.26 8.45 37.02 0.31 -3.95 16 28 H 0.49 2.76 8.96 -340.37 -3.05 -0.29 16 29 N -0.31 -6.83 12.89 -58.75 -0.76 -7.59 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.06 1.77 5.88 -2.39 -0.01 1.76 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.79 5.88 -2.39 -0.01 1.78 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.42 11.80 8.71 -92.71 -0.81 10.99 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.10 2.69 7.43 -2.39 -0.02 2.67 16 42 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 43 H 0.02 0.87 7.18 -2.38 -0.02 0.85 16 44 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.45 8.02 8.18 -92.71 -0.76 7.26 16 Total: -1.00 -77.82 378.65 0.55 -77.26 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -3.60 Total: 24.82 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 6.89 Total: 22.20 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -4.26 Total: -117.44 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.37 Total: -50.68 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.84 kcal Total: -77.82 0.55 -77.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496322606.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.057 kcal (2) G-P(sol) polarization free energy of solvation -77.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds