Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47122 * 2 1 4 4 C 1.38553 * 120.01548 * 122.68927 * 3 2 1 5 5 C 1.40070 * 117.82013 * 179.72682 * 4 3 2 6 6 C 1.48131 * 121.14854 * 180.26925 * 5 4 3 7 7 O 1.21516 * 120.00165 * 126.58845 * 6 5 4 8 8 N 1.34772 * 120.00109 * 306.58954 * 6 5 4 9 9 C 1.46500 * 119.99852 * 4.75533 * 8 6 5 10 10 C 1.50696 * 109.47222 * 95.71800 * 9 8 6 11 11 H 1.07997 * 119.99867 * 355.19124 * 10 9 8 12 12 C 1.37875 * 120.00262 * 175.19455 * 10 9 8 13 13 N 1.31513 * 120.00185 * 185.13548 * 12 10 9 14 14 Si 1.86806 * 119.99777 * 5.13589 * 12 10 9 15 15 H 1.48497 * 109.47142 * 94.73811 * 14 12 10 16 16 H 1.48500 * 109.46933 * 214.73941 * 14 12 10 17 17 H 1.48497 * 109.46988 * 334.73774 * 14 12 10 18 18 C 1.46503 * 120.00247 * 184.75533 * 8 6 5 19 19 C 1.50703 * 109.47134 * 89.99597 * 18 8 6 20 20 C 1.38666 * 120.41888 * 269.72537 * 19 18 8 21 21 C 1.38633 * 118.41777 * 179.78383 * 20 19 18 22 22 C 1.38229 * 119.16052 * 0.51383 * 21 20 19 23 23 N 1.31856 * 120.76377 * 359.72287 * 22 21 20 24 24 C 1.31880 * 121.72548 * 0.02562 * 23 22 21 25 25 C 1.39777 * 117.70249 * 0.24876 * 5 4 3 26 26 C 1.50702 * 120.16634 * 180.02562 * 25 5 4 27 27 N 1.31892 * 119.65714 * 359.97438 * 25 5 4 28 28 N 1.28275 * 122.33169 * 0.02562 * 27 25 5 29 29 H 1.09008 * 109.47084 * 60.00020 * 1 2 3 30 30 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47475 * 300.00265 * 1 2 3 32 32 H 1.09000 * 109.46985 * 239.99561 * 2 1 3 33 33 H 1.09000 * 109.46456 * 119.99872 * 2 1 3 34 34 H 1.08003 * 121.08675 * 359.97438 * 4 3 2 35 35 H 1.09005 * 109.47017 * 215.71262 * 9 8 6 36 36 H 1.09000 * 109.47172 * 335.71453 * 9 8 6 37 37 H 0.97005 * 119.99930 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.47240 * 210.00180 * 18 8 6 39 39 H 1.09002 * 109.46760 * 330.00226 * 18 8 6 40 40 H 1.07998 * 120.79531 * 0.02562 * 20 19 18 41 41 H 1.07999 * 120.41880 * 180.21520 * 21 20 19 42 42 H 1.08001 * 119.61923 * 179.74941 * 22 21 20 43 43 H 1.08000 * 119.62020 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.47308 * 94.29859 * 26 25 5 45 45 H 1.09002 * 109.46847 * 214.29958 * 26 25 5 46 46 H 1.08999 * 109.47598 * 334.29219 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8742 1.8582 1.0097 5 6 3.3181 3.1858 0.9614 6 6 4.2247 3.7289 1.9994 7 8 5.2651 4.2672 1.6762 8 7 3.8957 3.6259 3.3023 9 6 2.6947 2.8863 3.6982 10 6 3.0729 1.4755 4.0688 11 1 4.0909 1.1381 3.9411 12 6 2.1195 0.6153 4.5709 13 7 2.4685 -0.5818 4.9886 14 14 0.3318 1.1505 4.6576 15 1 -0.3850 0.6802 3.4452 16 1 -0.3021 0.5646 5.8660 17 1 0.2617 2.6320 4.7308 18 6 4.7390 4.2536 4.3226 19 6 4.2614 5.6609 4.5730 20 6 4.7776 6.7184 3.8395 21 6 4.3053 7.9953 4.1010 22 6 3.3502 8.1719 5.0845 23 7 2.8854 7.1431 5.7657 24 6 3.3080 5.9143 5.5406 25 6 2.8765 3.9804 -0.1004 26 6 3.3203 5.4167 -0.2071 27 7 2.0703 3.4664 -1.0089 28 7 1.6674 2.2496 -0.9588 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.1814 1.1961 1.8057 35 1 2.2328 3.3758 4.5557 36 1 1.9894 2.8671 2.8673 37 1 1.7976 -1.1871 5.3415 38 1 4.6788 3.6795 5.2472 39 1 5.7722 4.2769 3.9760 40 1 5.5269 6.5509 3.0800 41 1 4.6824 8.8420 3.5466 42 1 2.9800 9.1640 5.2970 43 1 2.9042 5.0966 6.1191 44 1 4.1963 5.4793 -0.8527 45 1 2.5137 6.0156 -0.6300 46 1 3.5716 5.7940 0.7841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514695483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = 51.381467 kcal Electronic energy + Delta-G solvation = -30326.242128 eV Core-core repulsion = 26409.276514 eV Total energy + Delta-G solvation = -3916.965615 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12034 -40.17901 -39.00852 -35.76843 -34.88168 -33.69762 -32.89732 -32.34513 -31.63736 -31.08560 -28.41403 -27.77566 -26.71865 -25.01047 -23.55030 -23.14271 -22.79584 -22.44245 -21.51269 -19.09037 -17.55900 -17.23798 -16.99478 -16.81012 -16.08733 -15.97807 -15.37385 -15.26979 -15.07079 -14.59898 -14.43475 -14.12487 -13.88220 -13.64481 -13.35844 -13.26232 -12.93975 -12.88039 -12.78686 -12.61222 -12.29653 -12.10770 -12.06614 -11.96846 -11.62949 -11.41728 -11.28436 -11.00116 -10.87276 -10.55499 -10.46758 -10.11704 -9.86266 -9.75972 -9.67522 -9.41152 -9.23858 -9.18263 -8.93893 -8.89729 -8.14413 -6.45964 -4.50046 0.82186 1.11634 1.16552 1.34534 2.89888 3.02604 3.11802 3.15648 3.36430 3.78693 3.96054 4.07136 4.15455 4.49898 4.60387 4.65738 4.77972 4.84677 4.90056 4.95859 5.07420 5.12338 5.18801 5.25567 5.43839 5.45975 5.50039 5.67061 5.69700 5.71595 5.77192 5.86191 5.97634 6.00025 6.05803 6.09524 6.12310 6.17808 6.28590 6.35364 6.39889 6.41483 6.44385 6.61926 6.75634 6.91677 7.18069 7.71628 8.01874 8.10535 8.40640 8.58515 8.95407 9.12422 10.64630 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.005351 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.785359 B = 5231.270659 C = 7041.599081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C 0.059 3.941 4 C -0.062 4.062 5 C -0.122 4.122 6 C 0.569 3.431 7 O -0.546 6.546 8 N -0.573 5.573 9 C 0.203 3.797 10 C -0.553 4.553 11 H 0.084 0.916 12 C 0.088 3.912 13 N -0.876 5.876 14 Si 0.856 3.144 15 H -0.268 1.268 16 H -0.279 1.279 17 H -0.263 1.263 18 C 0.161 3.839 19 C -0.149 4.149 20 C -0.057 4.057 21 C -0.179 4.179 22 C 0.092 3.908 23 N -0.489 5.489 24 C 0.114 3.886 25 C 0.097 3.903 26 C -0.094 4.094 27 N -0.253 5.253 28 N -0.234 5.234 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.187 0.813 35 H 0.038 0.962 36 H 0.028 0.972 37 H 0.270 0.730 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 9.136 -3.762 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.091 4.091 5 C -0.136 4.136 6 C 0.356 3.644 7 O -0.426 6.426 8 N -0.302 5.302 9 C 0.082 3.918 10 C -0.591 4.591 11 H 0.102 0.898 12 C -0.118 4.118 13 N -0.512 5.512 14 Si 0.682 3.318 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.187 1.187 18 C 0.037 3.963 19 C -0.153 4.153 20 C -0.083 4.083 21 C -0.199 4.199 22 C -0.065 4.065 23 N -0.197 5.197 24 C -0.043 4.043 25 C -0.048 4.048 26 C -0.152 4.152 27 N -0.095 5.095 28 N -0.076 5.076 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.204 0.796 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.169 0.831 43 H 0.174 0.826 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.138 9.601 -4.556 10.628 hybrid contribution 0.338 -0.303 0.891 1.000 sum 0.200 9.298 -3.665 9.996 Atomic orbital electron populations 1.21705 0.94112 1.01962 1.02521 1.20449 0.97008 0.89185 1.04031 1.22842 0.95248 0.98549 0.91902 1.23429 0.91836 0.95810 0.98052 1.20998 0.99627 0.95748 0.97203 1.17898 0.85096 0.78938 0.82470 1.90705 1.24531 1.45552 1.81795 1.47874 1.27377 1.50765 1.04195 1.20033 0.82633 0.92785 0.96334 1.21258 0.98742 0.93840 1.45272 0.89784 1.24790 0.98525 0.94729 0.93727 1.69879 1.34514 1.07270 1.39493 0.87141 0.85763 0.79935 0.78939 1.19292 1.20405 1.18714 1.20226 0.94992 0.87909 0.93140 1.21404 0.98835 0.97326 0.97685 1.21675 0.97742 0.91943 0.96983 1.22130 0.99637 0.98009 1.00111 1.22737 0.93666 0.97903 0.92172 1.67713 1.25822 0.99764 1.26426 1.22812 0.92550 0.94110 0.94867 1.22836 0.93329 0.98252 0.90374 1.20627 1.01975 0.88922 1.03680 1.72920 1.09345 1.05538 1.21676 1.72625 1.16939 0.97679 1.20350 0.91821 0.92052 0.92700 0.89779 0.88973 0.79592 0.94448 0.95375 0.91959 0.88115 0.89035 0.84351 0.85033 0.83144 0.82565 0.89522 0.90343 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.79 37.16 0.36 -1.69 16 2 C -0.07 -1.00 6.35 -27.89 -0.18 -1.18 16 3 C 0.06 1.03 6.23 -82.45 -0.51 0.52 16 4 C -0.06 -1.16 7.50 -38.78 -0.29 -1.45 16 5 C -0.12 -2.26 4.77 -104.57 -0.50 -2.76 16 6 C 0.57 10.64 6.23 -12.20 -0.08 10.57 16 7 O -0.55 -10.54 15.49 5.35 0.08 -10.46 16 8 N -0.57 -10.47 2.44 -177.44 -0.43 -10.91 16 9 C 0.20 4.09 3.71 -5.20 -0.02 4.07 16 10 C -0.55 -12.71 7.64 -34.44 -0.26 -12.97 16 11 H 0.08 2.14 8.06 -52.49 -0.42 1.72 16 12 C 0.09 2.13 5.47 -17.82 -0.10 2.03 16 13 N -0.88 -22.78 13.96 55.43 0.77 -22.01 16 14 Si 0.86 18.40 27.58 -169.99 -4.69 13.71 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.26 -5.51 6.40 56.52 0.36 -5.15 16 18 C 0.16 2.54 5.61 -5.19 -0.03 2.51 16 19 C -0.15 -2.18 5.48 -104.48 -0.57 -2.76 16 20 C -0.06 -0.75 9.86 -39.28 -0.39 -1.14 16 21 C -0.18 -2.06 10.11 -39.44 -0.40 -2.45 16 22 C 0.09 1.13 11.18 -17.54 -0.20 0.94 16 23 N -0.49 -7.28 10.36 -13.25 -0.14 -7.42 16 24 C 0.11 1.70 10.86 -17.55 -0.19 1.51 16 25 C 0.10 1.70 6.91 -81.99 -0.57 1.13 16 26 C -0.09 -1.34 9.51 36.01 0.34 -1.00 16 27 N -0.25 -4.65 11.42 33.81 0.39 -4.26 16 28 N -0.23 -4.28 11.10 33.58 0.37 -3.91 16 29 H 0.06 0.88 8.00 -51.92 -0.42 0.46 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.39 7.91 -51.93 -0.41 0.98 16 34 H 0.19 3.68 5.44 -52.48 -0.29 3.40 16 35 H 0.04 0.76 7.06 -51.93 -0.37 0.39 16 36 H 0.03 0.59 5.17 -51.93 -0.27 0.32 16 37 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 38 H 0.10 1.56 8.02 -51.93 -0.42 1.14 16 39 H 0.09 1.41 7.31 -51.93 -0.38 1.04 16 40 H 0.14 1.80 7.95 -52.49 -0.42 1.38 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.11 6.69 -51.93 -0.35 0.76 16 LS Contribution 384.98 15.07 5.80 5.80 Total: -1.00 -27.84 384.98 -7.70 -35.54 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.29 Total: 8.03 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.57 Total: -4.12 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.96 Total: -48.50 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.69 Total: 13.71 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.84 -7.70 -35.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514695483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.921 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds