Wall clock time and date at job start Sat Apr 11 2020 06:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47122 * 2 1 4 4 C 1.38553 * 120.01548 * 122.68927 * 3 2 1 5 5 C 1.40070 * 117.82013 * 179.72682 * 4 3 2 6 6 C 1.48131 * 121.14854 * 180.26925 * 5 4 3 7 7 O 1.21516 * 120.00165 * 126.58845 * 6 5 4 8 8 N 1.34772 * 120.00109 * 306.58954 * 6 5 4 9 9 C 1.46500 * 119.99852 * 4.75533 * 8 6 5 10 10 C 1.50696 * 109.47222 * 95.71800 * 9 8 6 11 11 H 1.07997 * 119.99867 * 355.19124 * 10 9 8 12 12 C 1.37875 * 120.00262 * 175.19455 * 10 9 8 13 13 N 1.31513 * 120.00185 * 185.13548 * 12 10 9 14 14 Si 1.86806 * 119.99777 * 5.13589 * 12 10 9 15 15 H 1.48497 * 109.47142 * 94.73811 * 14 12 10 16 16 H 1.48500 * 109.46933 * 214.73941 * 14 12 10 17 17 H 1.48497 * 109.46988 * 334.73774 * 14 12 10 18 18 C 1.46503 * 120.00247 * 184.75533 * 8 6 5 19 19 C 1.50703 * 109.47134 * 89.99597 * 18 8 6 20 20 C 1.38666 * 120.41888 * 269.72537 * 19 18 8 21 21 C 1.38633 * 118.41777 * 179.78383 * 20 19 18 22 22 C 1.38229 * 119.16052 * 0.51383 * 21 20 19 23 23 N 1.31856 * 120.76377 * 359.72287 * 22 21 20 24 24 C 1.31880 * 121.72548 * 0.02562 * 23 22 21 25 25 C 1.39777 * 117.70249 * 0.24876 * 5 4 3 26 26 C 1.50702 * 120.16634 * 180.02562 * 25 5 4 27 27 N 1.31892 * 119.65714 * 359.97438 * 25 5 4 28 28 N 1.28275 * 122.33169 * 0.02562 * 27 25 5 29 29 H 1.09008 * 109.47084 * 60.00020 * 1 2 3 30 30 H 1.09002 * 109.47326 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47475 * 300.00265 * 1 2 3 32 32 H 1.09000 * 109.46985 * 239.99561 * 2 1 3 33 33 H 1.09000 * 109.46456 * 119.99872 * 2 1 3 34 34 H 1.08003 * 121.08675 * 359.97438 * 4 3 2 35 35 H 1.09005 * 109.47017 * 215.71262 * 9 8 6 36 36 H 1.09000 * 109.47172 * 335.71453 * 9 8 6 37 37 H 0.97005 * 119.99930 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.47240 * 210.00180 * 18 8 6 39 39 H 1.09002 * 109.46760 * 330.00226 * 18 8 6 40 40 H 1.07998 * 120.79531 * 0.02562 * 20 19 18 41 41 H 1.07999 * 120.41880 * 180.21520 * 21 20 19 42 42 H 1.08001 * 119.61923 * 179.74941 * 22 21 20 43 43 H 1.08000 * 119.62020 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.47308 * 94.29859 * 26 25 5 45 45 H 1.09002 * 109.46847 * 214.29958 * 26 25 5 46 46 H 1.08999 * 109.47598 * 334.29219 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8742 1.8582 1.0097 5 6 3.3181 3.1858 0.9614 6 6 4.2247 3.7289 1.9994 7 8 5.2651 4.2672 1.6762 8 7 3.8957 3.6259 3.3023 9 6 2.6947 2.8863 3.6982 10 6 3.0729 1.4755 4.0688 11 1 4.0909 1.1381 3.9411 12 6 2.1195 0.6153 4.5709 13 7 2.4685 -0.5818 4.9886 14 14 0.3318 1.1505 4.6576 15 1 -0.3850 0.6802 3.4452 16 1 -0.3021 0.5646 5.8660 17 1 0.2617 2.6320 4.7308 18 6 4.7390 4.2536 4.3226 19 6 4.2614 5.6609 4.5730 20 6 4.7776 6.7184 3.8395 21 6 4.3053 7.9953 4.1010 22 6 3.3502 8.1719 5.0845 23 7 2.8854 7.1431 5.7657 24 6 3.3080 5.9143 5.5406 25 6 2.8765 3.9804 -0.1004 26 6 3.3203 5.4167 -0.2071 27 7 2.0703 3.4664 -1.0089 28 7 1.6674 2.2496 -0.9588 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 3.1814 1.1961 1.8057 35 1 2.2328 3.3758 4.5557 36 1 1.9894 2.8671 2.8673 37 1 1.7976 -1.1871 5.3415 38 1 4.6788 3.6795 5.2472 39 1 5.7722 4.2769 3.9760 40 1 5.5269 6.5509 3.0800 41 1 4.6824 8.8420 3.5466 42 1 2.9800 9.1640 5.2970 43 1 2.9042 5.0966 6.1191 44 1 4.1963 5.4793 -0.8527 45 1 2.5137 6.0156 -0.6300 46 1 3.5716 5.7940 0.7841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514695483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:02 Heat of formation + Delta-G solvation = 36.506295 kcal Electronic energy + Delta-G solvation = -30326.887164 eV Core-core repulsion = 26409.276514 eV Total energy + Delta-G solvation = -3917.610651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.52996 -41.31808 -40.37645 -37.25657 -36.18835 -35.12662 -34.56262 -33.59882 -32.75770 -32.30987 -30.08968 -29.02463 -28.03043 -26.35489 -24.81922 -24.44934 -24.24109 -23.68586 -22.74716 -20.52524 -19.25902 -18.71089 -18.37184 -17.99278 -17.47209 -17.10714 -16.76825 -16.57652 -16.41259 -16.16429 -15.79376 -15.44486 -15.09148 -14.91680 -14.71634 -14.51309 -14.34692 -14.15029 -14.03474 -13.91229 -13.69940 -13.50205 -13.32840 -13.20907 -12.89518 -12.82506 -12.67458 -12.52752 -12.17815 -12.12652 -11.86014 -11.78215 -11.51545 -11.15755 -10.85067 -10.78071 -10.59165 -10.52759 -10.47669 -10.00797 -9.65419 -8.36023 -6.42094 -0.62467 -0.23069 0.08186 0.31644 1.30343 1.37766 1.40817 1.42871 1.96005 2.26258 2.38325 2.83575 2.89154 2.95950 3.17702 3.29775 3.43418 3.51718 3.79224 3.83218 3.90714 3.96761 4.07489 4.08471 4.18412 4.31076 4.41912 4.47235 4.52016 4.54017 4.59778 4.63008 4.71125 4.72467 4.74676 4.85616 4.88880 4.97660 5.01675 5.12764 5.17557 5.18613 5.30658 5.34483 5.34696 5.44366 5.75847 6.05942 6.35795 6.62985 6.92479 6.99411 7.23323 7.54281 8.77943 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009445 B = 0.005351 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.785359 B = 5231.270659 C = 7041.599081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C 0.060 3.940 4 C -0.071 4.071 5 C -0.135 4.135 6 C 0.570 3.430 7 O -0.553 6.553 8 N -0.575 5.575 9 C 0.216 3.784 10 C -0.538 4.538 11 H 0.051 0.949 12 C 0.050 3.950 13 N -0.918 5.918 14 Si 0.903 3.097 15 H -0.260 1.260 16 H -0.281 1.281 17 H -0.253 1.253 18 C 0.161 3.839 19 C -0.158 4.158 20 C -0.063 4.063 21 C -0.166 4.166 22 C 0.091 3.909 23 N -0.512 5.512 24 C 0.099 3.901 25 C 0.096 3.904 26 C -0.090 4.090 27 N -0.261 5.261 28 N -0.241 5.241 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.034 0.966 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.170 0.830 35 H 0.042 0.958 36 H 0.027 0.973 37 H 0.271 0.729 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.140 0.860 41 H 0.168 0.832 42 H 0.184 0.816 43 H 0.151 0.849 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 11.359 -4.759 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.085 4.085 4 C -0.101 4.101 5 C -0.149 4.149 6 C 0.357 3.643 7 O -0.433 6.433 8 N -0.303 5.303 9 C 0.094 3.906 10 C -0.576 4.576 11 H 0.069 0.931 12 C -0.152 4.152 13 N -0.556 5.556 14 Si 0.727 3.273 15 H -0.185 1.185 16 H -0.207 1.207 17 H -0.177 1.177 18 C 0.039 3.961 19 C -0.162 4.162 20 C -0.089 4.089 21 C -0.186 4.186 22 C -0.066 4.066 23 N -0.221 5.221 24 C -0.057 4.057 25 C -0.049 4.049 26 C -0.148 4.148 27 N -0.103 5.103 28 N -0.083 5.083 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.187 0.813 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.111 0.889 40 H 0.158 0.842 41 H 0.185 0.815 42 H 0.201 0.799 43 H 0.169 0.831 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.851 11.842 -5.555 13.108 hybrid contribution 0.666 -0.933 1.177 1.643 sum -0.185 10.909 -4.378 11.756 Atomic orbital electron populations 1.21687 0.93299 1.03239 1.01640 1.20554 0.97622 0.87730 1.04796 1.23149 0.94625 0.99561 0.91173 1.23299 0.92674 0.95846 0.98241 1.21139 0.99983 0.95973 0.97759 1.17933 0.85031 0.78778 0.82538 1.90689 1.24746 1.46010 1.81868 1.47867 1.27084 1.50653 1.04706 1.19750 0.83358 0.91280 0.96210 1.21248 0.97039 0.95198 1.44114 0.93115 1.25334 1.01710 0.94588 0.93578 1.69982 1.35701 1.08559 1.41364 0.86386 0.81875 0.80094 0.78952 1.18485 1.20671 1.17670 1.20277 0.94677 0.88877 0.92265 1.21207 0.99623 0.96725 0.98604 1.21799 0.97812 0.92487 0.96807 1.22482 0.98437 0.98197 0.99434 1.23350 0.93214 0.98551 0.91499 1.67725 1.26683 1.00131 1.27513 1.22769 0.93131 0.94486 0.95351 1.23259 0.92635 0.99503 0.89517 1.20703 1.03105 0.87030 1.03922 1.72888 1.09686 1.05699 1.22045 1.72602 1.17225 0.97892 1.20570 0.91467 0.89757 0.94683 0.87449 0.89704 0.81290 0.94020 0.95525 0.91929 0.88510 0.88915 0.84176 0.81461 0.79872 0.83129 0.88278 0.88333 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.79 71.98 0.70 -3.08 16 2 C -0.07 -1.96 6.35 29.85 0.19 -1.77 16 3 C 0.06 2.06 6.23 42.62 0.27 2.32 16 4 C -0.07 -2.68 7.50 22.79 0.17 -2.51 16 5 C -0.13 -4.95 4.77 -19.83 -0.09 -5.05 16 6 C 0.57 21.23 6.23 86.87 0.54 21.77 16 7 O -0.55 -21.01 15.49 -3.77 -0.06 -21.07 16 8 N -0.57 -21.13 2.44 -833.59 -2.04 -23.16 16 9 C 0.22 8.75 3.71 85.63 0.32 9.07 16 10 C -0.54 -25.39 7.64 25.60 0.20 -25.19 16 11 H 0.05 2.71 8.06 -2.91 -0.02 2.69 16 12 C 0.05 2.46 5.47 84.65 0.46 2.93 16 13 N -0.92 -49.03 13.96 21.45 0.30 -48.73 16 14 Si 0.90 37.80 27.58 68.60 1.89 39.69 16 15 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 16 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.25 -10.11 6.40 99.48 0.64 -9.47 16 18 C 0.16 5.15 5.61 85.63 0.48 5.63 16 19 C -0.16 -4.53 5.48 -19.77 -0.11 -4.64 16 20 C -0.06 -1.54 9.86 22.47 0.22 -1.32 16 21 C -0.17 -3.26 10.11 22.36 0.23 -3.04 16 22 C 0.09 1.95 11.18 84.69 0.95 2.90 16 23 N -0.51 -14.45 10.36 -195.84 -2.03 -16.48 16 24 C 0.10 2.92 10.86 84.67 0.92 3.84 16 25 C 0.10 3.25 6.91 42.92 0.30 3.54 16 26 C -0.09 -2.37 9.51 71.24 0.68 -1.70 16 27 N -0.26 -9.27 11.42 -46.93 -0.54 -9.81 16 28 N -0.24 -8.58 11.10 -47.69 -0.53 -9.11 16 29 H 0.07 1.74 8.00 -2.38 -0.02 1.72 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.56 7.91 -2.39 -0.02 2.54 16 34 H 0.17 6.94 5.44 -2.91 -0.02 6.92 16 35 H 0.04 1.68 7.06 -2.38 -0.02 1.66 16 36 H 0.03 1.11 5.17 -2.39 -0.01 1.10 16 37 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 38 H 0.10 3.10 8.02 -2.39 -0.02 3.08 16 39 H 0.09 2.90 7.31 -2.39 -0.02 2.88 16 40 H 0.14 3.39 7.95 -2.91 -0.02 3.37 16 41 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.07 1.98 6.69 -2.39 -0.02 1.96 16 Total: -1.00 -59.88 384.98 4.35 -55.53 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.93 Total: 29.42 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 6.41 Total: 3.71 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -4.83 Total: -107.28 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.06 Total: -21.07 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.89 Total: 39.69 kcal Total: -59.88 4.35 -55.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514695483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.036 kcal (2) G-P(sol) polarization free energy of solvation -59.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds