Wall clock time and date at job start Sat Apr 11 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47412 * 2 1 4 4 C 1.52997 * 109.47259 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46937 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47198 * 179.97438 * 5 4 3 7 7 N 1.29524 * 126.14718 * 90.01899 * 6 5 4 8 8 N 1.26245 * 116.58054 * 179.97438 * 7 6 5 9 9 C 1.29891 * 117.66504 * 0.02562 * 8 7 6 10 10 N 1.39064 * 125.65667 * 179.97438 * 9 8 7 11 11 C 1.34784 * 119.99919 * 0.02562 * 10 9 8 12 12 O 1.21277 * 119.99868 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99736 * 179.97438 * 11 10 9 14 14 N 1.46903 * 109.46882 * 179.97438 * 13 11 10 15 15 C 1.46897 * 110.99821 * 175.32477 * 14 13 11 16 16 H 1.08997 * 109.47419 * 33.77135 * 15 14 13 17 17 C 1.50701 * 109.46641 * 153.77249 * 15 14 13 18 18 H 1.07998 * 120.00766 * 0.02562 * 17 15 14 19 19 C 1.37881 * 119.99867 * 179.97438 * 17 15 14 20 20 N 1.31508 * 120.00348 * 179.97438 * 19 17 15 21 21 Si 1.86807 * 119.99837 * 0.02562 * 19 17 15 22 22 H 1.48499 * 109.46708 * 269.99819 * 21 19 17 23 23 H 1.48495 * 109.47027 * 29.99771 * 21 19 17 24 24 H 1.48502 * 109.46960 * 150.00245 * 21 19 17 25 25 C 1.53002 * 109.47226 * 273.77049 * 15 14 13 26 26 C 1.53008 * 109.47046 * 300.11929 * 25 15 14 27 27 S 1.71317 * 108.68893 * 0.22163 * 9 8 7 28 28 H 1.09005 * 109.47068 * 59.99476 * 1 2 3 29 29 H 1.08994 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46678 * 300.00215 * 1 2 3 31 31 H 1.09004 * 109.46999 * 240.00426 * 2 1 3 32 32 H 1.08997 * 109.47646 * 120.00357 * 2 1 3 33 33 H 1.08997 * 109.46523 * 59.99879 * 3 2 1 34 34 H 1.08997 * 109.47125 * 300.00206 * 3 2 1 35 35 H 1.08997 * 109.46970 * 60.00222 * 4 3 2 36 36 H 1.08997 * 109.46961 * 299.99990 * 4 3 2 37 37 H 1.08997 * 109.47257 * 60.00217 * 5 4 3 38 38 H 1.08997 * 109.47139 * 299.99700 * 5 4 3 39 39 H 0.97006 * 120.00213 * 180.02562 * 10 9 8 40 40 H 1.09007 * 109.46968 * 60.00474 * 13 11 10 41 41 H 1.08998 * 109.47611 * 300.00041 * 13 11 10 42 42 H 1.00902 * 111.00331 * 299.28093 * 14 13 11 43 43 H 0.96999 * 120.00431 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.47210 * 60.12207 * 25 15 14 45 45 H 1.08997 * 109.46750 * 180.12493 * 25 15 14 46 46 H 1.08997 * 109.47189 * 302.79513 * 26 25 15 47 47 H 1.09004 * 109.46737 * 62.79505 * 26 25 15 48 48 H 1.09001 * 109.46809 * 182.79609 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.5871 2.8850 0.0000 7 7 6.3511 2.8858 -1.0459 8 7 7.5960 2.8862 -0.8361 9 6 7.9995 2.8852 0.3985 10 7 9.3253 2.8849 0.8181 11 6 10.3200 2.8862 -0.0915 12 8 10.0586 2.8881 -1.2758 13 6 11.7567 2.8864 0.3632 14 7 12.6414 2.8873 -0.8096 15 6 14.0496 2.9993 -0.4067 16 1 14.1986 2.4822 0.5412 17 6 14.9253 2.3753 -1.4625 18 1 14.4804 1.9394 -2.3448 19 6 16.2947 2.3617 -1.3026 20 7 17.0590 1.8167 -2.2237 21 14 17.0645 3.1161 0.2232 22 1 17.3572 4.5502 -0.0277 23 1 16.1219 2.9956 1.3643 24 1 18.3262 2.4024 0.5456 25 6 14.4181 4.4755 -0.2456 26 6 14.2062 5.2021 -1.5754 27 16 6.6275 2.8773 1.4245 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9285 0.8891 37 1 3.7171 3.3982 0.8904 38 1 3.7164 3.3993 -0.8895 39 1 9.5344 2.8837 1.7653 40 1 11.9485 1.9959 0.9618 41 1 11.9478 3.7759 0.9635 42 1 12.4917 2.0659 -1.3762 43 1 18.0223 1.8067 -2.1110 44 1 13.7862 4.9264 0.5195 45 1 15.4636 4.5587 0.0512 46 1 14.8006 4.7201 -2.3515 47 1 13.1515 5.1615 -1.8475 48 1 14.5156 6.2424 -1.4743 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569738880.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:10 Heat of formation + Delta-G solvation = 21.559413 kcal Electronic energy + Delta-G solvation = -26123.424629 eV Core-core repulsion = 22340.609784 eV Total energy + Delta-G solvation = -3782.814845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44989 -39.74030 -36.94370 -36.52082 -35.27674 -33.53296 -32.65943 -31.38913 -30.30965 -28.26348 -27.30341 -25.84982 -24.73117 -23.15243 -22.88498 -21.72843 -21.45642 -20.14177 -19.38982 -19.00506 -17.75465 -16.93859 -16.33994 -16.27547 -16.15674 -15.67559 -15.02205 -14.86586 -14.37573 -14.18825 -13.92877 -13.83945 -13.64823 -13.61824 -13.38853 -13.15619 -12.73418 -12.56261 -12.40409 -12.22115 -11.89942 -11.55304 -11.48953 -11.43049 -11.18935 -11.11248 -10.96762 -10.75402 -10.71753 -10.60607 -10.40817 -10.25945 -10.07361 -9.83944 -9.63233 -9.37113 -9.02697 -8.88678 -8.61705 -7.62814 -6.12805 -4.12640 0.25809 0.33107 0.95999 2.33091 2.56177 2.82755 3.23530 3.30208 3.34268 3.84192 4.28623 4.34041 4.36367 4.44934 4.56897 4.72553 4.88647 4.92985 4.96645 4.98636 5.18487 5.20385 5.26408 5.29929 5.39247 5.45062 5.47923 5.53356 5.55824 5.64256 5.74380 5.83023 5.86631 5.92472 6.07492 6.16636 6.41628 6.60473 6.80529 6.87685 7.08392 7.15848 7.47641 7.54553 7.76957 7.99598 8.22093 8.53589 8.54620 8.92663 9.47899 10.99873 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.030404 B = 0.001721 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.704081 B =16261.660306 C =16455.296659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.033 4.033 6 C 0.002 3.998 7 N -0.223 5.223 8 N -0.272 5.272 9 C 0.242 3.758 10 N -0.634 5.634 11 C 0.503 3.497 12 O -0.442 6.442 13 C 0.049 3.951 14 N -0.659 5.659 15 C 0.188 3.812 16 H 0.004 0.996 17 C -0.516 4.516 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.895 5.895 21 Si 0.887 3.113 22 H -0.276 1.276 23 H -0.269 1.269 24 H -0.297 1.297 25 C -0.114 4.114 26 C -0.127 4.127 27 S 0.087 5.913 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.423 0.577 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.352 0.648 43 H 0.265 0.735 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.598 0.645 13.624 32.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.075 4.075 6 C -0.280 4.280 7 N -0.059 5.059 8 N -0.116 5.116 9 C -0.128 4.128 10 N -0.288 5.288 11 C 0.286 3.714 12 O -0.306 6.306 13 C -0.085 4.085 14 N -0.292 5.292 15 C 0.079 3.921 16 H 0.021 0.979 17 C -0.554 4.554 18 H 0.099 0.901 19 C -0.128 4.128 20 N -0.532 5.532 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.195 1.195 24 H -0.225 1.225 25 C -0.152 4.152 26 C -0.184 4.184 27 S 0.327 5.673 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.261 0.739 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.171 0.829 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -29.377 1.269 12.187 31.830 hybrid contribution 1.009 -0.388 1.781 2.083 sum -28.368 0.882 13.969 31.633 Atomic orbital electron populations 1.21777 0.95831 1.01651 1.01804 1.21536 0.95882 0.96755 1.02244 1.21609 0.94387 0.97193 1.02441 1.21653 0.95836 0.94864 1.03240 1.20205 0.83517 0.99065 1.04716 1.29882 1.02404 1.07375 0.88361 1.71440 0.96226 1.12293 1.25892 1.71566 1.05779 1.19847 1.14450 1.26048 0.92344 1.01605 0.92781 1.43444 1.00234 1.73282 1.11850 1.21635 0.87245 0.76139 0.86344 1.90858 1.82984 1.40938 1.15828 1.21810 0.87782 1.02706 0.96211 1.60228 1.05409 1.47509 1.16099 1.19622 0.84155 0.92407 0.95902 0.97896 1.20987 0.90834 1.37577 1.06038 0.90108 1.24887 0.97054 0.94824 0.96032 1.69880 1.04881 1.44551 1.33898 0.86862 0.78306 0.78992 0.84077 1.20325 1.19477 1.22508 1.21774 0.98191 0.98068 0.97119 1.21487 1.02215 0.96416 0.98327 1.84681 0.98578 1.72074 1.12007 0.92697 0.92799 0.92778 0.91860 0.92002 0.91730 0.91519 0.90923 0.91551 0.89300 0.88119 0.73901 0.92347 0.88170 0.82853 0.92519 0.95167 0.93906 0.91286 0.92454 0.96067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16 2 C -0.13 -0.62 5.93 -26.73 -0.16 -0.78 16 3 C -0.12 -0.54 5.21 -26.73 -0.14 -0.68 16 4 C -0.12 -0.68 5.20 -26.73 -0.14 -0.82 16 5 C -0.03 -0.21 5.84 -27.88 -0.16 -0.37 16 6 C 0.00 0.02 7.05 -13.25 -0.09 -0.07 16 7 N -0.22 -3.28 11.65 33.58 0.39 -2.89 16 8 N -0.27 -4.57 9.74 29.97 0.29 -4.28 16 9 C 0.24 3.17 8.14 -87.07 -0.71 2.46 16 10 N -0.63 -7.33 5.41 -12.91 -0.07 -7.39 16 11 C 0.50 7.76 7.84 -10.98 -0.09 7.68 16 12 O -0.44 -9.02 14.99 5.56 0.08 -8.94 16 13 C 0.05 0.72 5.93 -4.97 -0.03 0.69 16 14 N -0.66 -13.15 5.13 -109.22 -0.56 -13.71 16 15 C 0.19 4.21 1.89 -68.86 -0.13 4.08 16 16 H 0.00 0.08 6.89 -51.93 -0.36 -0.28 16 17 C -0.52 -13.94 7.87 -34.44 -0.27 -14.21 16 18 H 0.08 2.41 7.84 -52.49 -0.41 1.99 16 19 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 20 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 21 Si 0.89 21.33 24.37 -169.99 -4.14 17.19 16 22 H -0.28 -6.56 6.87 56.52 0.39 -6.17 16 23 H -0.27 -6.11 6.53 56.52 0.37 -5.74 16 24 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 25 C -0.11 -2.43 5.29 -26.73 -0.14 -2.58 16 26 C -0.13 -2.72 9.52 37.16 0.35 -2.37 16 27 S 0.09 0.76 23.31 -107.50 -2.51 -1.75 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.42 2.95 8.82 -40.82 -0.36 2.59 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.10 1.31 7.43 -51.93 -0.39 0.93 16 42 H 0.35 7.44 8.07 -39.29 -0.32 7.12 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.03 0.56 7.48 -51.93 -0.39 0.17 16 45 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 46 H 0.07 1.66 7.12 -51.93 -0.37 1.29 16 47 H 0.06 1.22 7.69 -51.93 -0.40 0.82 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -34.77 398.91 -9.00 -43.77 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.84 Total: 3.26 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -1.44 Total: -5.29 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.83 Total: -54.25 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.14 Total: 17.19 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.51 Total: -1.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.77 -9.00 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569738880.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.325 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds