Wall clock time and date at job start Sat Apr 11 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52996 * 109.47175 * 124.72247 * 3 2 1 5 5 H 1.08998 * 109.47244 * 304.99940 * 4 3 2 6 6 C 1.53001 * 109.46931 * 185.00067 * 4 3 2 7 7 C 1.50696 * 109.47322 * 64.99899 * 6 4 3 8 8 C 1.38234 * 120.00192 * 269.72768 * 7 6 4 9 9 C 1.38235 * 120.00048 * 179.76716 * 8 7 6 10 10 C 1.38230 * 120.00189 * 0.50400 * 9 8 7 11 11 C 1.38234 * 119.99812 * 359.74794 * 10 9 8 12 12 C 1.38236 * 120.00231 * 359.97438 * 11 10 9 13 13 N 1.46502 * 109.47301 * 64.99661 * 4 3 2 14 14 C 1.35313 * 125.86499 * 34.71525 * 13 4 3 15 15 C 1.35350 * 106.17404 * 179.90483 * 14 13 4 16 16 C 1.50703 * 126.75260 * 180.12976 * 15 14 13 17 17 N 1.46497 * 109.47125 * 95.24167 * 16 15 14 18 18 C 1.34778 * 119.99669 * 179.97438 * 17 16 15 19 19 O 1.21687 * 119.99935 * 0.02562 * 18 17 16 20 20 C 1.46377 * 119.99927 * 180.02562 * 18 17 16 21 21 H 1.08005 * 119.99645 * 359.97438 * 20 18 17 22 22 C 1.40047 * 120.00069 * 180.02562 * 20 18 17 23 23 N 1.30670 * 119.99766 * 359.97438 * 22 20 18 24 24 Si 1.86792 * 120.00020 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47395 * 59.99810 * 24 22 20 26 26 H 1.48506 * 109.47347 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47299 * 299.99610 * 24 22 20 28 28 N 1.33777 * 106.49690 * 0.35067 * 15 14 13 29 29 N 1.28639 * 108.88551 * 359.77387 * 28 15 14 30 30 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 31 31 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 32 32 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 33 33 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 34 34 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 35 35 H 1.09007 * 109.46619 * 184.99812 * 6 4 3 36 36 H 1.08995 * 109.47085 * 304.99562 * 6 4 3 37 37 H 1.08002 * 119.99669 * 359.97438 * 8 7 6 38 38 H 1.08001 * 119.99909 * 180.22632 * 9 8 7 39 39 H 1.07997 * 120.00265 * 179.72592 * 10 9 8 40 40 H 1.08002 * 120.00219 * 179.97438 * 11 10 9 41 41 H 1.08003 * 120.00114 * 179.97438 * 12 11 10 42 42 H 1.07995 * 126.90965 * 0.02562 * 14 13 4 43 43 H 1.09006 * 109.46752 * 215.24648 * 16 15 14 44 44 H 1.09002 * 109.46724 * 335.24333 * 16 15 14 45 45 H 0.96998 * 120.00425 * 0.02562 * 17 16 15 46 46 H 0.97003 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1856 5 1 2.4795 1.1521 2.1081 6 6 3.7039 2.7077 1.2587 7 6 2.6687 3.7604 1.5607 8 6 2.0122 4.4010 0.5265 9 6 1.0592 5.3632 0.8036 10 6 0.7701 5.6923 2.1147 11 6 1.4304 5.0555 3.1488 12 6 2.3793 4.0892 2.8718 13 7 4.0505 0.2993 1.0110 14 6 4.5822 -0.0991 -0.1678 15 6 5.4798 -1.0669 0.1315 16 6 6.3416 -1.8296 -0.8416 17 7 7.6560 -1.1896 -0.9354 18 6 8.5985 -1.7024 -1.7511 19 8 8.3574 -2.6967 -2.4099 20 6 9.9120 -1.0633 -1.8444 21 1 10.1258 -0.1806 -1.2599 22 6 10.8912 -1.5958 -2.6924 23 7 10.6323 -2.6634 -3.3999 24 14 12.5672 -0.7798 -2.8120 25 1 13.2133 -0.7775 -1.4749 26 1 13.4166 -1.5317 -3.7704 27 1 12.4044 0.6183 -3.2856 28 7 5.4480 -1.2168 1.4604 29 7 4.5911 -0.3928 1.9520 30 1 -0.5400 -0.9353 0.0045 31 1 -0.5400 0.9353 -0.0045 32 1 1.8500 -0.9353 0.0046 33 1 2.6252 1.4004 -0.9293 34 1 1.3582 2.1318 0.0846 35 1 4.4564 2.7013 2.0473 36 1 4.1802 2.9299 0.3038 37 1 2.2414 4.1473 -0.4979 38 1 0.5436 5.8611 -0.0043 39 1 0.0288 6.4472 2.3311 40 1 1.2049 5.3129 4.1732 41 1 2.8954 3.5919 3.6798 42 1 4.3406 0.2804 -1.1496 43 1 6.4610 -2.8559 -0.4941 44 1 5.8673 -1.8312 -1.8230 45 1 7.8483 -0.3973 -0.4099 46 1 11.3103 -3.0321 -3.9875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594653080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:46 Heat of formation + Delta-G solvation = 99.524362 kcal Electronic energy + Delta-G solvation = -28025.906980 eV Core-core repulsion = 24111.028998 eV Total energy + Delta-G solvation = -3914.877982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.22511 -39.96511 -37.52263 -37.11341 -34.23675 -33.69946 -32.72433 -32.27200 -31.36276 -30.70002 -29.67568 -27.21529 -26.87697 -25.08140 -24.11862 -23.01580 -21.89189 -21.25435 -20.78836 -20.15422 -19.60157 -17.72698 -17.24983 -16.88008 -16.31254 -16.06606 -15.48848 -15.41605 -15.27563 -14.86267 -14.57459 -14.15962 -13.93014 -13.83487 -13.71456 -13.54329 -13.34769 -13.30918 -12.98639 -12.64240 -12.15229 -12.09094 -11.88908 -11.64359 -11.52192 -11.42480 -11.33206 -11.29549 -11.13005 -10.89768 -10.54107 -10.41280 -10.22964 -10.07940 -9.77492 -9.35920 -9.18644 -9.10692 -8.80495 -7.56868 -7.46482 -6.14308 -4.59423 0.83354 0.94830 1.67437 1.85226 2.25226 2.67307 3.19204 3.23896 3.26114 3.31075 3.97672 4.15539 4.21630 4.24665 4.39507 4.47168 4.53628 4.58261 4.63398 4.69728 4.72825 4.83724 4.88978 5.00997 5.05422 5.11047 5.17741 5.23116 5.26469 5.36659 5.41917 5.52859 5.58701 5.60437 5.68969 5.87960 6.00809 6.07857 6.12635 6.16326 6.22889 6.31357 6.47285 6.53671 6.55522 6.64574 7.47664 7.96462 8.11589 8.37187 8.66815 9.06646 9.57292 10.64066 10.82446 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002217 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.886654 B =12623.821644 C =13641.594111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C -0.108 4.108 4 C 0.159 3.841 5 H 0.114 0.886 6 C -0.093 4.093 7 C -0.081 4.081 8 C -0.114 4.114 9 C -0.119 4.119 10 C -0.120 4.120 11 C -0.117 4.117 12 C -0.111 4.111 13 N -0.289 5.289 14 C -0.038 4.038 15 C -0.017 4.017 16 C 0.216 3.784 17 N -0.761 5.761 18 C 0.557 3.443 19 O -0.581 6.581 20 C -0.544 4.544 21 H 0.066 0.934 22 C 0.088 3.912 23 N -0.768 5.768 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.269 1.269 28 N -0.255 5.255 29 N -0.091 5.091 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.187 0.813 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.381 0.619 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.418 17.508 9.020 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.179 4.179 3 C -0.146 4.146 4 C 0.058 3.942 5 H 0.132 0.868 6 C -0.132 4.132 7 C -0.082 4.082 8 C -0.132 4.132 9 C -0.137 4.137 10 C -0.138 4.138 11 C -0.135 4.135 12 C -0.129 4.129 13 N -0.083 5.083 14 C -0.189 4.189 15 C -0.155 4.155 16 C 0.090 3.910 17 N -0.417 5.417 18 C 0.361 3.639 19 O -0.464 6.464 20 C -0.581 4.581 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.397 5.397 24 Si 0.733 3.267 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.194 1.194 28 N -0.122 5.122 29 N -0.070 5.070 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.204 0.796 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.212 0.788 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.496 16.340 9.918 30.288 hybrid contribution 0.715 1.141 -0.883 1.610 sum -22.780 17.481 9.035 30.102 Atomic orbital electron populations 1.23886 0.95698 1.02105 1.00019 1.22872 0.96221 0.98035 1.00800 1.21291 0.98200 0.97582 0.97505 1.21568 0.86277 0.84551 1.01853 0.86828 1.21005 0.96881 0.90568 1.04715 1.19585 0.97515 0.97485 0.93618 1.21122 0.96513 0.96603 0.98923 1.21173 0.97956 0.97712 0.96824 1.21207 0.99840 0.99857 0.92935 1.21181 0.96474 0.96489 0.99391 1.21141 0.97973 0.97759 0.96066 1.47409 1.28705 1.26836 1.05334 1.23313 1.00936 1.01896 0.92775 1.22327 1.00668 0.99950 0.92590 1.19044 0.83515 0.94942 0.93518 1.46147 1.12265 1.33090 1.50220 1.18201 0.83793 0.83841 0.78063 1.90601 1.80950 1.27688 1.47116 1.20826 0.96383 1.13707 1.27146 0.91529 1.25696 0.99560 0.94036 0.93910 1.70011 1.33443 1.17263 1.18972 0.86438 0.81900 0.79762 0.78647 1.19285 1.20582 1.19350 1.75127 1.12695 1.15847 1.08533 1.78296 1.08351 1.04395 1.15937 0.88178 0.88399 0.87225 0.89370 0.88146 0.89279 0.89413 0.85719 0.85888 0.86059 0.85905 0.85753 0.79557 0.91496 0.91574 0.78801 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 14.32 29.01 0.42 -0.86 16 2 C -0.16 -1.31 9.06 -36.03 -0.33 -1.63 16 3 C -0.11 -0.72 4.55 -27.88 -0.13 -0.85 16 4 C 0.16 1.31 2.69 -67.93 -0.18 1.13 16 5 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.09 -0.69 5.16 -27.88 -0.14 -0.83 16 7 C -0.08 -0.55 4.71 -104.62 -0.49 -1.05 16 8 C -0.11 -0.69 7.89 -39.58 -0.31 -1.00 16 9 C -0.12 -0.68 10.05 -39.59 -0.40 -1.08 16 10 C -0.12 -0.70 10.05 -39.59 -0.40 -1.09 16 11 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 12 C -0.11 -0.76 9.70 -39.58 -0.38 -1.14 16 13 N -0.29 -3.47 2.98 -54.76 -0.16 -3.63 16 14 C -0.04 -0.49 10.28 -17.05 -0.18 -0.67 16 15 C -0.02 -0.29 6.62 -82.77 -0.55 -0.84 16 16 C 0.22 4.33 6.23 -5.19 -0.03 4.30 16 17 N -0.76 -17.61 5.54 -62.90 -0.35 -17.96 16 18 C 0.56 16.08 7.75 -12.99 -0.10 15.98 16 19 O -0.58 -18.94 15.02 5.20 0.08 -18.86 16 20 C -0.54 -15.58 9.54 -35.63 -0.34 -15.92 16 21 H 0.07 1.76 7.85 -52.48 -0.41 1.34 16 22 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 23 N -0.77 -23.23 11.83 55.55 0.66 -22.57 16 24 Si 0.91 20.39 29.56 -169.99 -5.02 15.36 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 28 N -0.25 -4.64 12.41 33.29 0.41 -4.22 16 29 N -0.09 -1.43 13.17 60.35 0.79 -0.63 16 30 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 31 H 0.10 0.57 7.84 -52.49 -0.41 0.15 16 32 H 0.11 1.10 7.89 -52.49 -0.41 0.68 16 33 H 0.09 0.54 6.91 -51.93 -0.36 0.18 16 34 H 0.10 0.55 5.59 -51.93 -0.29 0.26 16 35 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.12 0.59 8.01 -52.49 -0.42 0.17 16 38 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 39 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16 40 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.19 1.85 7.17 -52.49 -0.38 1.48 16 43 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.38 8.10 8.44 -40.82 -0.34 7.75 16 46 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -36.63 394.85 -8.07 -44.70 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.38 Total: 6.18 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -4.04 Total: -4.30 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 1.35 Total: -49.02 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.08 Total: -18.86 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.63 -8.07 -44.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594653080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.220 kcal (2) G-P(sol) polarization free energy of solvation -36.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds