Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 C 1.52996 * 109.47175 * 124.72247 * 3 2 1 5 5 H 1.08998 * 109.47244 * 304.99940 * 4 3 2 6 6 C 1.53001 * 109.46931 * 185.00067 * 4 3 2 7 7 C 1.50696 * 109.47322 * 64.99899 * 6 4 3 8 8 C 1.38234 * 120.00192 * 269.72768 * 7 6 4 9 9 C 1.38235 * 120.00048 * 179.76716 * 8 7 6 10 10 C 1.38230 * 120.00189 * 0.50400 * 9 8 7 11 11 C 1.38234 * 119.99812 * 359.74794 * 10 9 8 12 12 C 1.38236 * 120.00231 * 359.97438 * 11 10 9 13 13 N 1.46502 * 109.47301 * 64.99661 * 4 3 2 14 14 C 1.35313 * 125.86499 * 34.71525 * 13 4 3 15 15 C 1.35350 * 106.17404 * 179.90483 * 14 13 4 16 16 C 1.50703 * 126.75260 * 180.12976 * 15 14 13 17 17 N 1.46497 * 109.47125 * 95.24167 * 16 15 14 18 18 C 1.34778 * 119.99669 * 179.97438 * 17 16 15 19 19 O 1.21687 * 119.99935 * 0.02562 * 18 17 16 20 20 C 1.46377 * 119.99927 * 180.02562 * 18 17 16 21 21 H 1.08005 * 119.99645 * 359.97438 * 20 18 17 22 22 C 1.40047 * 120.00069 * 180.02562 * 20 18 17 23 23 N 1.30670 * 119.99766 * 359.97438 * 22 20 18 24 24 Si 1.86792 * 120.00020 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47395 * 59.99810 * 24 22 20 26 26 H 1.48506 * 109.47347 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47299 * 299.99610 * 24 22 20 28 28 N 1.33777 * 106.49690 * 0.35067 * 15 14 13 29 29 N 1.28639 * 108.88551 * 359.77387 * 28 15 14 30 30 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 31 31 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 32 32 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 33 33 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 34 34 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 35 35 H 1.09007 * 109.46619 * 184.99812 * 6 4 3 36 36 H 1.08995 * 109.47085 * 304.99562 * 6 4 3 37 37 H 1.08002 * 119.99669 * 359.97438 * 8 7 6 38 38 H 1.08001 * 119.99909 * 180.22632 * 9 8 7 39 39 H 1.07997 * 120.00265 * 179.72592 * 10 9 8 40 40 H 1.08002 * 120.00219 * 179.97438 * 11 10 9 41 41 H 1.08003 * 120.00114 * 179.97438 * 12 11 10 42 42 H 1.07995 * 126.90965 * 0.02562 * 14 13 4 43 43 H 1.09006 * 109.46752 * 215.24648 * 16 15 14 44 44 H 1.09002 * 109.46724 * 335.24333 * 16 15 14 45 45 H 0.96998 * 120.00425 * 0.02562 * 17 16 15 46 46 H 0.97003 * 120.00102 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0301 1.3360 1.1856 5 1 2.4795 1.1521 2.1081 6 6 3.7039 2.7077 1.2587 7 6 2.6687 3.7604 1.5607 8 6 2.0122 4.4010 0.5265 9 6 1.0592 5.3632 0.8036 10 6 0.7701 5.6923 2.1147 11 6 1.4304 5.0555 3.1488 12 6 2.3793 4.0892 2.8718 13 7 4.0505 0.2993 1.0110 14 6 4.5822 -0.0991 -0.1678 15 6 5.4798 -1.0669 0.1315 16 6 6.3416 -1.8296 -0.8416 17 7 7.6560 -1.1896 -0.9354 18 6 8.5985 -1.7024 -1.7511 19 8 8.3574 -2.6967 -2.4099 20 6 9.9120 -1.0633 -1.8444 21 1 10.1258 -0.1806 -1.2599 22 6 10.8912 -1.5958 -2.6924 23 7 10.6323 -2.6634 -3.3999 24 14 12.5672 -0.7798 -2.8120 25 1 13.2133 -0.7775 -1.4749 26 1 13.4166 -1.5317 -3.7704 27 1 12.4044 0.6183 -3.2856 28 7 5.4480 -1.2168 1.4604 29 7 4.5911 -0.3928 1.9520 30 1 -0.5400 -0.9353 0.0045 31 1 -0.5400 0.9353 -0.0045 32 1 1.8500 -0.9353 0.0046 33 1 2.6252 1.4004 -0.9293 34 1 1.3582 2.1318 0.0846 35 1 4.4564 2.7013 2.0473 36 1 4.1802 2.9299 0.3038 37 1 2.2414 4.1473 -0.4979 38 1 0.5436 5.8611 -0.0043 39 1 0.0288 6.4472 2.3311 40 1 1.2049 5.3129 4.1732 41 1 2.8954 3.5919 3.6798 42 1 4.3406 0.2804 -1.1496 43 1 6.4610 -2.8559 -0.4941 44 1 5.8673 -1.8312 -1.8230 45 1 7.8483 -0.3973 -0.4099 46 1 11.3103 -3.0321 -3.9875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594653080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 75.652270 kcal Electronic energy + Delta-G solvation = -28026.942151 eV Core-core repulsion = 24111.028998 eV Total energy + Delta-G solvation = -3915.913154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.38630 -40.45523 -39.35974 -38.09849 -35.68668 -34.70582 -34.44129 -33.59070 -32.21620 -31.77938 -30.37152 -28.99686 -27.59295 -26.81642 -25.02277 -23.45660 -22.70001 -22.48406 -21.70679 -21.45418 -20.79468 -19.41002 -18.23001 -17.73143 -17.45111 -17.22890 -16.66053 -16.25847 -16.05323 -16.00827 -15.90195 -15.75740 -15.23501 -14.88598 -14.53021 -14.33178 -14.20213 -14.11601 -13.87692 -13.76729 -13.49917 -13.31957 -13.12035 -12.76337 -12.71451 -12.62836 -12.57673 -12.44410 -12.06745 -12.03414 -12.02338 -11.81824 -11.76099 -11.13879 -10.89763 -10.43755 -10.36208 -9.80395 -9.79271 -9.62170 -9.49336 -8.26823 -6.83441 0.34294 0.51507 0.60986 1.26335 1.31947 1.35217 1.42598 1.45539 1.57263 2.27863 2.49072 2.85137 3.13305 3.33728 3.40897 3.60710 3.64364 3.73293 3.80994 3.90613 3.98130 4.07021 4.15816 4.19314 4.24334 4.32702 4.35293 4.49413 4.58618 4.64344 4.68945 4.79248 4.80707 4.83694 4.97468 4.99080 5.06196 5.13371 5.19060 5.33830 5.57851 5.61774 5.65413 5.66279 5.67471 5.76378 5.88400 6.12322 6.17539 6.27113 6.88607 7.45569 7.52696 8.49656 8.68800 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002217 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.886654 B =12623.821644 C =13641.594111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.179 4.179 3 C -0.099 4.099 4 C 0.156 3.844 5 H 0.113 0.887 6 C -0.085 4.085 7 C -0.088 4.088 8 C -0.117 4.117 9 C -0.124 4.124 10 C -0.126 4.126 11 C -0.127 4.127 12 C -0.126 4.126 13 N -0.271 5.271 14 C -0.009 4.009 15 C -0.042 4.042 16 C 0.225 3.775 17 N -0.748 5.748 18 C 0.541 3.459 19 O -0.629 6.629 20 C -0.572 4.572 21 H 0.085 0.915 22 C 0.029 3.971 23 N -0.820 5.820 24 Si 0.998 3.002 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.252 1.252 28 N -0.294 5.294 29 N -0.105 5.105 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.223 0.777 43 H 0.040 0.960 44 H 0.073 0.927 45 H 0.391 0.609 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.274 20.726 8.687 33.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.198 4.198 3 C -0.137 4.137 4 C 0.056 3.944 5 H 0.131 0.869 6 C -0.123 4.123 7 C -0.089 4.089 8 C -0.135 4.135 9 C -0.142 4.142 10 C -0.144 4.144 11 C -0.145 4.145 12 C -0.145 4.145 13 N -0.064 5.064 14 C -0.161 4.161 15 C -0.181 4.181 16 C 0.099 3.901 17 N -0.403 5.403 18 C 0.346 3.654 19 O -0.517 6.517 20 C -0.609 4.609 21 H 0.103 0.897 22 C -0.186 4.186 23 N -0.449 5.449 24 Si 0.817 3.183 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.176 1.176 28 N -0.161 5.161 29 N -0.084 5.084 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.240 0.760 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.224 0.776 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.404 19.602 9.649 32.756 hybrid contribution 0.781 0.197 -0.711 1.074 sum -23.624 19.800 8.938 32.093 Atomic orbital electron populations 1.24062 0.95416 1.03025 0.98253 1.22826 0.96683 0.97759 1.02505 1.21298 0.97978 0.97392 0.96994 1.21937 0.85672 0.83865 1.02938 0.86868 1.20908 0.96755 0.90041 1.04605 1.19526 0.97756 0.97718 0.93904 1.21329 0.96296 0.96455 0.99437 1.21462 0.97824 0.97542 0.97383 1.21500 0.99948 0.99983 0.92982 1.21400 0.96388 0.96396 1.00350 1.21280 0.98514 0.98341 0.96318 1.47719 1.28057 1.26230 1.04429 1.23640 0.98598 0.99698 0.94168 1.21872 1.02349 1.01888 0.91964 1.18884 0.82598 0.93923 0.94741 1.45818 1.12745 1.32930 1.48783 1.18561 0.85063 0.83481 0.78307 1.90555 1.82075 1.29725 1.49310 1.21357 0.96927 1.14577 1.27996 0.89724 1.26957 1.04560 0.94370 0.92727 1.70175 1.35581 1.19244 1.19910 0.85074 0.75132 0.78960 0.79123 1.18236 1.19770 1.17601 1.75066 1.14255 1.17393 1.09353 1.78213 1.08572 1.04816 1.16769 0.88231 0.86551 0.89627 0.88138 0.86216 0.90723 0.88636 0.84145 0.84073 0.84406 0.84772 0.85876 0.76032 0.94189 0.90932 0.77596 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 14.32 67.78 0.97 -1.08 16 2 C -0.18 -2.60 9.06 25.64 0.23 -2.37 16 3 C -0.10 -1.05 4.55 29.85 0.14 -0.91 16 4 C 0.16 2.29 2.69 44.99 0.12 2.41 16 5 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 6 C -0.08 -1.10 5.16 29.85 0.15 -0.95 16 7 C -0.09 -1.02 4.71 -19.87 -0.09 -1.12 16 8 C -0.12 -1.09 7.89 22.27 0.18 -0.91 16 9 C -0.12 -1.07 10.05 22.27 0.22 -0.85 16 10 C -0.13 -1.16 10.05 22.27 0.22 -0.94 16 11 C -0.13 -1.36 10.05 22.27 0.22 -1.14 16 12 C -0.13 -1.57 9.70 22.27 0.22 -1.35 16 13 N -0.27 -6.21 2.98 -327.17 -0.97 -7.19 16 14 C -0.01 -0.22 10.28 83.49 0.86 0.64 16 15 C -0.04 -1.43 6.62 41.60 0.28 -1.16 16 16 C 0.22 9.30 6.23 85.63 0.53 9.83 16 17 N -0.75 -35.38 5.54 -471.13 -2.61 -38.00 16 18 C 0.54 32.15 7.75 86.36 0.67 32.82 16 19 O -0.63 -42.74 15.02 -4.31 -0.06 -42.81 16 20 C -0.57 -33.06 9.54 24.83 0.24 -32.82 16 21 H 0.08 4.41 7.85 -2.91 -0.02 4.39 16 22 C 0.03 1.65 5.50 85.30 0.47 2.11 16 23 N -0.82 -50.65 11.83 21.83 0.26 -50.39 16 24 Si 1.00 41.45 29.56 68.60 2.03 43.48 16 25 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.25 -9.74 7.11 99.48 0.71 -9.04 16 28 N -0.29 -10.93 12.41 -48.60 -0.60 -11.54 16 29 N -0.11 -3.30 13.17 37.02 0.49 -2.81 16 30 H 0.10 1.19 8.06 -2.91 -0.02 1.16 16 31 H 0.12 0.97 7.84 -2.91 -0.02 0.95 16 32 H 0.09 1.67 7.89 -2.91 -0.02 1.65 16 33 H 0.10 0.85 6.91 -2.39 -0.02 0.83 16 34 H 0.12 0.87 5.59 -2.39 -0.01 0.86 16 35 H 0.07 1.20 8.09 -2.38 -0.02 1.18 16 36 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 37 H 0.14 0.81 8.01 -2.91 -0.02 0.79 16 38 H 0.14 0.65 8.06 -2.91 -0.02 0.63 16 39 H 0.14 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.13 1.01 8.06 -2.91 -0.02 0.99 16 41 H 0.12 1.45 8.06 -2.91 -0.02 1.42 16 42 H 0.22 3.72 7.17 -2.91 -0.02 3.70 16 43 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 45 H 0.39 16.76 8.44 -92.71 -0.78 15.97 16 46 H 0.28 15.38 8.29 -92.71 -0.77 14.61 16 Total: -1.00 -82.78 394.85 4.36 -78.42 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: 0.21 Total: 28.59 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: 5.63 Total: 2.24 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -3.44 Total: -109.92 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.06 Total: -42.81 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -82.78 4.36 -78.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594653080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.072 kcal (2) G-P(sol) polarization free energy of solvation -82.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds