Wall clock time and date at job start Sat Apr 11 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30835 * 125.95711 * 2 1 4 4 C 1.33249 * 109.82211 * 180.12593 * 3 2 1 5 5 C 1.50704 * 125.52124 * 179.85524 * 4 3 2 6 6 H 1.08998 * 109.52218 * 359.63703 * 5 4 3 7 7 C 1.53038 * 109.49539 * 239.55189 * 5 4 3 8 8 C 1.53046 * 109.53429 * 178.68280 * 7 5 4 9 9 C 1.52761 * 109.38145 * 61.24766 * 8 7 5 10 10 N 1.46929 * 109.00396 * 305.58132 * 9 8 7 11 11 C 1.34772 * 120.63003 * 233.58226 * 10 9 8 12 12 O 1.21607 * 119.99893 * 173.87549 * 11 10 9 13 13 C 1.47436 * 120.00303 * 353.87929 * 11 10 9 14 14 C 1.39225 * 120.28199 * 306.16131 * 13 11 10 15 15 C 1.38214 * 120.09586 * 179.97438 * 14 13 11 16 16 C 1.38829 * 120.67387 * 359.97438 * 15 14 13 17 17 C 1.37605 * 120.56922 * 0.02562 * 16 15 14 18 18 C 1.40702 * 119.88073 * 0.02562 * 17 16 15 19 19 C 1.40887 * 120.32545 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00648 * 145.20396 * 19 18 17 21 21 C 1.40273 * 119.99998 * 325.19786 * 19 18 17 22 22 N 1.30631 * 120.00148 * 4.47083 * 21 19 18 23 23 Si 1.86800 * 120.00179 * 184.46554 * 21 19 18 24 24 H 1.48501 * 109.47342 * 90.00231 * 23 21 19 25 25 H 1.48503 * 109.47244 * 209.99928 * 23 21 19 26 26 H 1.48494 * 109.47220 * 330.00126 * 23 21 19 27 27 C 1.46925 * 118.73609 * 53.31796 * 10 9 8 28 28 N 1.30706 * 108.94910 * 359.58870 * 4 3 2 29 29 N 1.34428 * 125.96311 * 179.67233 * 2 1 3 30 30 H 0.97005 * 126.82085 * 359.97438 * 29 2 1 31 31 H 1.08994 * 109.46956 * 270.30517 * 1 2 3 32 32 H 1.09001 * 109.47075 * 30.30655 * 1 2 3 33 33 H 1.08993 * 109.46946 * 150.30541 * 1 2 3 34 34 H 1.08999 * 109.46525 * 298.70668 * 7 5 4 35 35 H 1.09008 * 109.45989 * 58.66779 * 7 5 4 36 36 H 1.09007 * 109.49149 * 181.31632 * 8 7 5 37 37 H 1.08996 * 109.50127 * 301.38511 * 8 7 5 38 38 H 1.08994 * 109.51071 * 185.70466 * 9 8 7 39 39 H 1.09001 * 109.43679 * 65.41526 * 9 8 7 40 40 H 1.08004 * 119.94670 * 359.97340 * 14 13 11 41 41 H 1.07995 * 119.66667 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.71617 * 180.28242 * 16 15 14 43 43 H 1.07999 * 120.05583 * 179.97438 * 17 16 15 44 44 H 0.97003 * 120.00279 * 180.02562 * 22 21 19 45 45 H 1.08994 * 109.59256 * 66.43013 * 27 10 9 46 46 H 1.09006 * 109.58325 * 186.85652 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5553 0.6888 -0.0028 5 6 4.7372 1.6237 -0.0068 6 1 4.3856 2.6554 -0.0136 7 6 5.5883 1.3657 -1.2523 8 6 6.7709 2.3369 -1.2741 9 6 7.6392 2.1062 -0.0386 10 7 6.7986 2.2055 1.1623 11 6 7.1310 3.0412 2.1660 12 8 6.3722 3.1980 3.1033 13 6 8.4147 3.7655 2.1278 14 6 9.6086 3.0696 1.9581 15 6 10.8097 3.7525 1.9223 16 6 10.8431 5.1342 2.0536 17 6 9.6797 5.8494 2.2225 18 6 8.4438 5.1781 2.2636 19 6 7.2469 5.9011 2.4355 20 1 6.3430 5.5743 1.9433 21 6 7.2293 7.0457 3.2464 22 7 8.3393 7.4914 3.7714 23 14 5.6185 7.9326 3.5753 24 1 4.9802 7.3654 4.7902 25 1 5.8834 9.3787 3.7846 26 1 4.7113 7.7587 2.4125 27 6 5.5855 1.3808 1.2456 28 7 3.6195 -0.6167 0.0043 29 7 2.2965 -1.0880 0.0062 30 1 2.0094 -2.0146 0.0119 31 1 -0.3633 0.0055 1.0276 32 1 -0.3633 0.8872 -0.5186 33 1 -0.3633 -0.8927 -0.5091 34 1 5.9599 0.3413 -1.2324 35 1 4.9801 1.5140 -2.1447 36 1 7.3635 2.1683 -2.1733 37 1 6.4002 3.3619 -1.2696 38 1 8.4238 2.8618 0.0011 39 1 8.0870 1.1138 -0.0901 40 1 9.5960 1.9946 1.8544 41 1 11.7317 3.2057 1.7908 42 1 11.7899 5.6525 2.0188 43 1 9.7153 6.9240 2.3243 44 1 8.3270 8.2826 4.3324 45 1 5.8623 0.3280 1.3009 46 1 5.0154 1.6579 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601321748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:57 Heat of formation + Delta-G solvation = 62.414178 kcal Electronic energy + Delta-G solvation = -29467.158179 eV Core-core repulsion = 25550.670979 eV Total energy + Delta-G solvation = -3916.487201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.31746 -39.60362 -37.51687 -36.39134 -33.96432 -33.57611 -32.53116 -32.02137 -30.96200 -29.89619 -29.35856 -28.02700 -25.69867 -24.87372 -24.15224 -22.03633 -21.66726 -20.89758 -20.78649 -19.65086 -18.55024 -17.97201 -17.19920 -16.39233 -15.93107 -15.51312 -15.16477 -14.83740 -14.55310 -14.29104 -14.21303 -13.91939 -13.71423 -13.49331 -13.24406 -13.11992 -12.96019 -12.61869 -12.50064 -12.18205 -12.07227 -11.96092 -11.62196 -11.28042 -11.10024 -11.08402 -10.86074 -10.79576 -10.64771 -10.54949 -10.37598 -10.14230 -10.09815 -9.89786 -9.68633 -9.57054 -9.22851 -8.67456 -8.04038 -7.49441 -7.34036 -6.67653 -4.41945 1.41992 2.44882 2.52625 2.73173 2.86268 3.12710 3.19025 3.27452 3.52596 3.87058 3.93281 4.01235 4.42707 4.55963 4.68312 4.88016 4.96715 5.03770 5.13806 5.19239 5.40895 5.42626 5.49406 5.55826 5.70017 5.73810 5.86260 5.98001 6.07650 6.10246 6.11917 6.13830 6.23295 6.29308 6.33356 6.37586 6.51304 6.60103 6.85882 7.02403 7.11241 7.15765 7.30087 7.49624 7.69111 7.93417 7.98222 7.99973 8.14288 8.27048 8.59682 8.84651 8.89072 9.22974 10.22348 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003476 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.779289 B = 8053.515166 C = 9713.631075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.278 3.722 3 N -0.534 5.534 4 C 0.247 3.753 5 C -0.010 4.010 6 H 0.103 0.897 7 C -0.105 4.105 8 C -0.134 4.134 9 C 0.109 3.891 10 N -0.620 5.620 11 C 0.586 3.414 12 O -0.537 6.537 13 C -0.243 4.243 14 C -0.065 4.065 15 C -0.239 4.239 16 C -0.099 4.099 17 C -0.151 4.151 18 C 0.142 3.858 19 C -0.434 4.434 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.801 5.801 23 Si 0.917 3.083 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C 0.127 3.873 28 N -0.310 5.310 29 N -0.487 5.487 30 H 0.438 0.562 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.132 0.868 44 H 0.281 0.719 45 H 0.064 0.936 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.100 -13.081 -10.227 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 N -0.263 5.263 4 C -0.036 4.036 5 C -0.032 4.032 6 H 0.121 0.879 7 C -0.143 4.143 8 C -0.172 4.172 9 C -0.014 4.014 10 N -0.355 5.355 11 C 0.379 3.621 12 O -0.413 6.413 13 C -0.248 4.248 14 C -0.084 4.084 15 C -0.258 4.258 16 C -0.118 4.118 17 C -0.170 4.170 18 C 0.139 3.861 19 C -0.463 4.463 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.427 5.427 23 Si 0.742 3.258 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.185 1.185 27 C 0.003 3.997 28 N -0.139 5.139 29 N -0.205 5.205 30 H 0.283 0.717 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.150 0.850 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.852 -12.798 -9.528 18.751 hybrid contribution -1.069 -0.432 0.256 1.181 sum -10.921 -13.229 -9.272 19.500 Atomic orbital electron populations 1.20383 0.83728 1.04866 1.04617 1.24421 0.96628 0.82950 0.96015 1.70423 1.01529 1.29433 1.24940 1.24117 0.92958 0.89882 0.96640 1.20007 0.88681 0.97203 0.97342 0.87876 1.21521 0.96464 1.00277 0.96055 1.21868 0.96757 1.00241 0.98377 1.21657 0.93812 1.02328 0.83596 1.48118 1.24593 1.43480 1.19325 1.18586 0.86491 0.76365 0.80677 1.90680 1.52567 1.63292 1.34735 1.19494 0.90741 0.94153 1.20365 1.20569 0.92272 0.96979 0.98610 1.20313 0.95863 0.94453 1.15176 1.20864 0.97208 0.93916 0.99784 1.21635 0.91306 1.00577 1.03473 1.17427 0.93611 0.88733 0.86361 1.19508 0.95908 1.06531 1.24383 0.90577 1.25918 0.98141 0.95936 0.94213 1.69649 1.27799 1.20556 1.24712 0.86152 0.81703 0.77826 0.80148 1.19218 1.20272 1.18485 1.21328 0.86517 0.94723 0.97142 1.77995 0.96279 1.12439 1.27159 1.48007 1.04495 1.09888 1.58151 0.71692 0.88968 0.88326 0.89998 0.91237 0.91890 0.90555 0.90923 0.88050 0.92369 0.89006 0.89095 0.89100 0.84992 0.90829 0.91736 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.28 2.91 8.24 -155.69 -1.28 1.62 16 3 N -0.53 -7.77 11.19 -8.16 -0.09 -7.86 16 4 C 0.25 3.68 6.65 -156.85 -1.04 2.64 16 5 C -0.01 -0.15 2.81 -91.65 -0.26 -0.41 16 6 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 7 C -0.10 -1.34 5.15 -26.69 -0.14 -1.47 16 8 C -0.13 -1.75 6.06 -26.83 -0.16 -1.92 16 9 C 0.11 1.69 5.54 -3.93 -0.02 1.67 16 10 N -0.62 -11.67 2.98 -174.29 -0.52 -12.19 16 11 C 0.59 13.89 6.38 -12.52 -0.08 13.81 16 12 O -0.54 -14.63 15.69 5.27 0.08 -14.55 16 13 C -0.24 -5.92 4.65 -104.37 -0.48 -6.40 16 14 C -0.07 -1.41 7.78 -39.22 -0.31 -1.72 16 15 C -0.24 -5.06 10.03 -39.37 -0.39 -5.45 16 16 C -0.10 -2.22 10.01 -39.59 -0.40 -2.62 16 17 C -0.15 -3.82 8.67 -38.88 -0.34 -4.15 16 18 C 0.14 3.79 5.57 -106.55 -0.59 3.19 16 19 C -0.43 -11.89 7.83 -37.82 -0.30 -12.19 16 20 H 0.08 2.12 7.40 -52.49 -0.39 1.73 16 21 C 0.07 1.95 5.43 -17.30 -0.09 1.86 16 22 N -0.80 -20.96 10.60 55.56 0.59 -20.38 16 23 Si 0.92 20.16 29.56 -169.99 -5.03 15.14 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 27 C 0.13 2.18 5.71 -3.71 -0.02 2.16 16 28 N -0.31 -4.25 12.80 32.42 0.41 -3.83 16 29 N -0.49 -4.82 7.45 32.62 0.24 -4.58 16 30 H 0.44 2.53 8.96 -182.33 -1.63 0.90 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.10 1.73 5.41 -51.93 -0.28 1.45 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 1.76 7.76 -52.48 -0.41 1.35 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.13 3.45 6.14 -52.49 -0.32 3.13 16 44 H 0.28 6.71 8.29 -40.82 -0.34 6.37 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.78 7.00 -51.93 -0.36 1.41 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -33.59 377.10 -11.76 -45.35 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.60 Total: 6.64 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -5.53 Total: -9.42 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.64 Total: -48.84 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.59 -11.76 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.762 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds