Wall clock time and date at job start Sat Apr 11 2020 06:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30835 * 125.95711 * 2 1 4 4 C 1.33249 * 109.82211 * 180.12593 * 3 2 1 5 5 C 1.50704 * 125.52124 * 179.85524 * 4 3 2 6 6 H 1.08998 * 109.52218 * 359.63703 * 5 4 3 7 7 C 1.53038 * 109.49539 * 239.55189 * 5 4 3 8 8 C 1.53046 * 109.53429 * 178.68280 * 7 5 4 9 9 C 1.52761 * 109.38145 * 61.24766 * 8 7 5 10 10 N 1.46929 * 109.00396 * 305.58132 * 9 8 7 11 11 C 1.34772 * 120.63003 * 233.58226 * 10 9 8 12 12 O 1.21607 * 119.99893 * 173.87549 * 11 10 9 13 13 C 1.47436 * 120.00303 * 353.87929 * 11 10 9 14 14 C 1.39225 * 120.28199 * 306.16131 * 13 11 10 15 15 C 1.38214 * 120.09586 * 179.97438 * 14 13 11 16 16 C 1.38829 * 120.67387 * 359.97438 * 15 14 13 17 17 C 1.37605 * 120.56922 * 0.02562 * 16 15 14 18 18 C 1.40702 * 119.88073 * 0.02562 * 17 16 15 19 19 C 1.40887 * 120.32545 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00648 * 145.20396 * 19 18 17 21 21 C 1.40273 * 119.99998 * 325.19786 * 19 18 17 22 22 N 1.30631 * 120.00148 * 4.47083 * 21 19 18 23 23 Si 1.86800 * 120.00179 * 184.46554 * 21 19 18 24 24 H 1.48501 * 109.47342 * 90.00231 * 23 21 19 25 25 H 1.48503 * 109.47244 * 209.99928 * 23 21 19 26 26 H 1.48494 * 109.47220 * 330.00126 * 23 21 19 27 27 C 1.46925 * 118.73609 * 53.31796 * 10 9 8 28 28 N 1.30706 * 108.94910 * 359.58870 * 4 3 2 29 29 N 1.34428 * 125.96311 * 179.67233 * 2 1 3 30 30 H 0.97005 * 126.82085 * 359.97438 * 29 2 1 31 31 H 1.08994 * 109.46956 * 270.30517 * 1 2 3 32 32 H 1.09001 * 109.47075 * 30.30655 * 1 2 3 33 33 H 1.08993 * 109.46946 * 150.30541 * 1 2 3 34 34 H 1.08999 * 109.46525 * 298.70668 * 7 5 4 35 35 H 1.09008 * 109.45989 * 58.66779 * 7 5 4 36 36 H 1.09007 * 109.49149 * 181.31632 * 8 7 5 37 37 H 1.08996 * 109.50127 * 301.38511 * 8 7 5 38 38 H 1.08994 * 109.51071 * 185.70466 * 9 8 7 39 39 H 1.09001 * 109.43679 * 65.41526 * 9 8 7 40 40 H 1.08004 * 119.94670 * 359.97340 * 14 13 11 41 41 H 1.07995 * 119.66667 * 179.97438 * 15 14 13 42 42 H 1.08001 * 119.71617 * 180.28242 * 16 15 14 43 43 H 1.07999 * 120.05583 * 179.97438 * 17 16 15 44 44 H 0.97003 * 120.00279 * 180.02562 * 22 21 19 45 45 H 1.08994 * 109.59256 * 66.43013 * 27 10 9 46 46 H 1.09006 * 109.58325 * 186.85652 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0591 0.0000 4 6 3.5553 0.6888 -0.0028 5 6 4.7372 1.6237 -0.0068 6 1 4.3856 2.6554 -0.0136 7 6 5.5883 1.3657 -1.2523 8 6 6.7709 2.3369 -1.2741 9 6 7.6392 2.1062 -0.0386 10 7 6.7986 2.2055 1.1623 11 6 7.1310 3.0412 2.1660 12 8 6.3722 3.1980 3.1033 13 6 8.4147 3.7655 2.1278 14 6 9.6086 3.0696 1.9581 15 6 10.8097 3.7525 1.9223 16 6 10.8431 5.1342 2.0536 17 6 9.6797 5.8494 2.2225 18 6 8.4438 5.1781 2.2636 19 6 7.2469 5.9011 2.4355 20 1 6.3430 5.5743 1.9433 21 6 7.2293 7.0457 3.2464 22 7 8.3393 7.4914 3.7714 23 14 5.6185 7.9326 3.5753 24 1 4.9802 7.3654 4.7902 25 1 5.8834 9.3787 3.7846 26 1 4.7113 7.7587 2.4125 27 6 5.5855 1.3808 1.2456 28 7 3.6195 -0.6167 0.0043 29 7 2.2965 -1.0880 0.0062 30 1 2.0094 -2.0146 0.0119 31 1 -0.3633 0.0055 1.0276 32 1 -0.3633 0.8872 -0.5186 33 1 -0.3633 -0.8927 -0.5091 34 1 5.9599 0.3413 -1.2324 35 1 4.9801 1.5140 -2.1447 36 1 7.3635 2.1683 -2.1733 37 1 6.4002 3.3619 -1.2696 38 1 8.4238 2.8618 0.0011 39 1 8.0870 1.1138 -0.0901 40 1 9.5960 1.9946 1.8544 41 1 11.7317 3.2057 1.7908 42 1 11.7899 5.6525 2.0188 43 1 9.7153 6.9240 2.3243 44 1 8.3270 8.2826 4.3324 45 1 5.8623 0.3280 1.3009 46 1 5.0154 1.6579 2.1324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601321748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:57 Heat of formation + Delta-G solvation = 41.941479 kcal Electronic energy + Delta-G solvation = -29468.045942 eV Core-core repulsion = 25550.670979 eV Total energy + Delta-G solvation = -3917.374963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.25973 -41.22722 -39.13690 -38.12534 -35.62979 -35.00078 -33.40374 -33.27641 -32.27913 -31.67295 -31.04207 -28.79271 -27.50567 -26.42144 -25.38998 -23.62106 -22.77900 -22.72266 -21.86669 -20.89239 -20.07431 -19.14121 -18.86274 -18.05068 -17.33619 -16.99196 -16.66558 -16.20190 -16.07357 -15.61719 -15.49166 -15.33764 -15.00328 -14.75829 -14.54825 -14.42194 -14.13471 -13.85330 -13.78142 -13.69929 -13.51400 -13.36833 -12.96116 -12.90515 -12.82606 -12.61575 -12.43835 -12.20355 -11.99249 -11.85567 -11.78814 -11.72715 -11.52234 -11.14636 -11.13469 -11.11189 -10.57724 -10.47297 -9.60783 -9.30858 -9.22170 -8.59352 -6.42449 0.51822 0.67228 1.03795 1.30196 1.42673 1.47753 1.66002 1.71653 1.99212 2.18330 2.22718 2.76012 2.94956 3.46779 3.63583 3.67074 3.75214 3.93209 4.05040 4.15665 4.17260 4.23867 4.41553 4.52490 4.56436 4.65281 4.67565 4.71042 4.76478 4.81647 4.89852 4.98677 5.01640 5.05428 5.09730 5.11738 5.19776 5.26521 5.27976 5.37785 5.39982 5.60353 5.70001 5.87478 6.05261 6.13003 6.19565 6.30156 6.50824 6.68045 6.89780 6.96012 7.05041 7.43565 8.32438 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003476 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.779289 B = 8053.515166 C = 9713.631075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.287 3.713 3 N -0.581 5.581 4 C 0.231 3.769 5 C -0.004 4.004 6 H 0.075 0.925 7 C -0.093 4.093 8 C -0.127 4.127 9 C 0.103 3.897 10 N -0.611 5.611 11 C 0.579 3.421 12 O -0.589 6.589 13 C -0.253 4.253 14 C -0.062 4.062 15 C -0.223 4.223 16 C -0.097 4.097 17 C -0.175 4.175 18 C 0.111 3.889 19 C -0.471 4.471 20 H 0.052 0.948 21 C 0.036 3.964 22 N -0.827 5.827 23 Si 0.973 3.027 24 H -0.276 1.276 25 H -0.252 1.252 26 H -0.264 1.264 27 C 0.133 3.867 28 N -0.326 5.326 29 N -0.473 5.473 30 H 0.457 0.543 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.288 0.712 45 H 0.083 0.917 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -15.686 -11.974 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.009 3.991 3 N -0.311 5.311 4 C -0.052 4.052 5 C -0.026 4.026 6 H 0.094 0.906 7 C -0.131 4.131 8 C -0.165 4.165 9 C -0.018 4.018 10 N -0.344 5.344 11 C 0.372 3.628 12 O -0.469 6.469 13 C -0.258 4.258 14 C -0.081 4.081 15 C -0.242 4.242 16 C -0.115 4.115 17 C -0.195 4.195 18 C 0.108 3.892 19 C -0.501 4.501 20 H 0.070 0.930 21 C -0.177 4.177 22 N -0.454 5.454 23 Si 0.795 3.205 24 H -0.201 1.201 25 H -0.175 1.175 26 H -0.188 1.188 27 C 0.009 3.991 28 N -0.155 5.155 29 N -0.193 5.193 30 H 0.306 0.694 31 H 0.124 0.876 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.141 0.859 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.552 -15.455 -11.335 21.415 hybrid contribution -1.114 0.151 0.737 1.345 sum -10.667 -15.304 -10.597 21.454 Atomic orbital electron populations 1.20653 0.80016 1.06695 1.05951 1.25255 0.98301 0.81963 0.93586 1.70386 1.01933 1.31801 1.27014 1.23920 0.93058 0.90253 0.97953 1.19812 0.89246 0.96104 0.97421 0.90610 1.21462 0.95896 1.00737 0.95044 1.21846 0.96924 0.99190 0.98580 1.21939 0.93503 1.03570 0.82835 1.48096 1.25220 1.41953 1.19116 1.18674 0.86192 0.76877 0.81089 1.90639 1.53844 1.65307 1.37143 1.19736 0.92286 0.93756 1.19977 1.20892 0.91340 0.98487 0.97337 1.20798 0.97230 0.94018 1.12114 1.21213 0.97309 0.94841 0.98126 1.21572 0.92176 1.00163 1.05562 1.17733 0.93984 0.90070 0.87417 1.19489 0.95620 1.08417 1.26560 0.93012 1.26573 1.01128 0.96296 0.93735 1.69684 1.28965 1.21293 1.25482 0.85341 0.77985 0.78008 0.79178 1.20143 1.17528 1.18804 1.21322 0.85806 0.94924 0.97012 1.77857 0.98479 1.11710 1.27470 1.47916 1.03238 1.10957 1.57190 0.69388 0.87646 0.88319 0.86341 0.89843 0.90707 0.86961 0.93041 0.89561 0.89097 0.85907 0.84898 0.86136 0.86683 0.90141 0.89936 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.51 71.24 0.75 0.16 16 2 C 0.29 5.56 8.24 138.23 1.14 6.70 16 3 N -0.58 -16.96 11.19 -179.72 -2.01 -18.97 16 4 C 0.23 6.90 6.65 138.63 0.92 7.82 16 5 C 0.00 -0.11 2.81 -11.46 -0.03 -0.15 16 6 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 7 C -0.09 -2.24 5.15 30.62 0.16 -2.08 16 8 C -0.13 -3.14 6.06 30.53 0.19 -2.95 16 9 C 0.10 3.04 5.54 86.22 0.48 3.51 16 10 N -0.61 -23.41 2.98 -823.60 -2.45 -25.86 16 11 C 0.58 28.66 6.38 86.67 0.55 29.21 16 12 O -0.59 -34.32 15.69 -4.05 -0.06 -34.38 16 13 C -0.25 -12.60 4.65 -19.70 -0.09 -12.69 16 14 C -0.06 -2.56 7.78 22.50 0.18 -2.39 16 15 C -0.22 -8.72 10.03 22.41 0.22 -8.50 16 16 C -0.10 -4.19 10.01 22.26 0.22 -3.96 16 17 C -0.18 -9.11 8.67 22.72 0.20 -8.91 16 18 C 0.11 6.18 5.57 -21.11 -0.12 6.06 16 19 C -0.47 -27.60 7.83 23.41 0.18 -27.42 16 20 H 0.05 3.15 7.40 -2.91 -0.02 3.13 16 21 C 0.04 2.00 5.43 85.37 0.46 2.46 16 22 N -0.83 -45.17 10.60 21.88 0.23 -44.94 16 23 Si 0.97 43.43 29.56 68.60 2.03 45.46 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.13 4.70 5.71 86.36 0.49 5.19 16 28 N -0.33 -8.53 12.80 -51.33 -0.66 -9.19 16 29 N -0.47 -8.44 7.45 -50.70 -0.38 -8.82 16 30 H 0.46 4.06 8.96 -213.09 -1.91 2.15 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 36 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.09 2.85 5.41 -2.39 -0.01 2.83 16 39 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 40 H 0.12 4.28 7.76 -2.91 -0.02 4.26 16 41 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 42 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 43 H 0.12 6.29 6.14 -2.91 -0.02 6.28 16 44 H 0.29 14.23 8.29 -92.71 -0.77 13.46 16 45 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.06 2.38 7.00 -2.38 -0.02 2.36 16 Total: -1.00 -79.66 377.10 1.71 -77.95 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.89 Total: 26.67 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 5.90 Total: -7.92 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -5.27 Total: -107.77 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.06 Total: -34.38 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -79.66 1.71 -77.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601321748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.888 kcal (2) G-P(sol) polarization free energy of solvation -79.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds