Wall clock time and date at job start Sat Apr 11 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47500 * 2 1 4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1 5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2 6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3 7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46829 * 89.97637 * 7 6 5 9 9 C 1.46897 * 111.00373 * 293.95435 * 8 7 6 10 10 C 1.50703 * 109.47344 * 69.99813 * 9 8 7 11 11 H 1.08004 * 119.99558 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00461 * 180.02562 * 10 9 8 13 13 N 1.31503 * 120.00303 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99601 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.46893 * 90.00183 * 14 12 10 16 16 H 1.48497 * 109.46956 * 209.99867 * 14 12 10 17 17 H 1.48494 * 109.47231 * 329.99977 * 14 12 10 18 18 C 1.46905 * 110.99833 * 170.00079 * 8 7 6 19 19 C 1.52997 * 109.46844 * 190.00293 * 18 8 7 20 20 N 1.46905 * 109.46844 * 180.02562 * 19 18 8 21 21 C 1.47013 * 111.00008 * 293.63133 * 20 19 18 22 22 C 1.53091 * 109.25788 * 177.60760 * 21 20 19 23 23 O 1.43019 * 109.25797 * 56.85151 * 22 21 20 24 24 C 1.43015 * 113.73874 * 301.32493 * 23 22 21 25 25 C 1.47019 * 110.99976 * 169.99744 * 20 19 18 26 26 S 1.71215 * 108.61179 * 0.02562 * 6 5 4 27 27 H 1.09001 * 109.46910 * 60.00302 * 1 2 3 28 28 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46926 * 300.00592 * 1 2 3 30 30 H 1.09007 * 109.47102 * 239.99217 * 2 1 3 31 31 H 1.08996 * 109.46894 * 120.00188 * 2 1 3 32 32 H 1.09000 * 109.47136 * 209.97649 * 7 6 5 33 33 H 1.09001 * 109.46989 * 329.97993 * 7 6 5 34 34 H 1.08991 * 109.47620 * 190.00357 * 9 8 7 35 35 H 1.09001 * 109.46770 * 310.00307 * 9 8 7 36 36 H 0.97004 * 120.00536 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47036 * 309.99876 * 18 8 7 38 38 H 1.08992 * 109.47020 * 69.99779 * 18 8 7 39 39 H 1.09003 * 109.46964 * 299.99628 * 19 18 8 40 40 H 1.08992 * 109.47732 * 59.99922 * 19 18 8 41 41 H 1.09001 * 109.50261 * 297.54126 * 21 20 19 42 42 H 1.09001 * 109.50570 * 57.67403 * 21 20 19 43 43 H 1.08998 * 109.50844 * 296.91843 * 22 21 20 44 44 H 1.09000 * 109.54512 * 176.80106 * 22 21 20 45 45 H 1.08996 * 109.50777 * 298.74043 * 24 23 22 46 46 H 1.09000 * 109.54648 * 178.62778 * 24 23 22 47 47 H 1.09004 * 109.50369 * 302.32424 * 25 20 19 48 48 H 1.09004 * 109.50787 * 62.40988 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2846 2.1326 1.0509 5 7 2.7053 3.3071 0.8483 6 6 2.8378 3.6673 -0.3875 7 6 3.3211 5.0128 -0.8643 8 7 4.7821 4.9830 -1.0150 9 6 5.4423 4.8156 0.2865 10 6 5.1919 3.4215 0.8013 11 1 4.6016 2.7290 0.2194 12 6 5.7162 3.0301 2.0148 13 7 5.4972 1.8138 2.4642 14 14 6.7366 4.2281 3.0214 15 1 5.8471 4.9915 3.9331 16 1 7.7370 3.4762 3.8207 17 1 7.4368 5.1689 2.1105 18 6 5.2654 6.1899 -1.6991 19 6 6.7419 6.0147 -2.0598 20 7 7.2254 7.2218 -2.7434 21 6 6.5704 7.3859 -4.0492 22 6 7.0576 8.6836 -4.6991 23 8 8.4832 8.6497 -4.8090 24 6 9.1537 8.4916 -3.5557 25 6 8.6876 7.1919 -2.8942 26 16 2.3723 2.3602 -1.3906 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5140 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.8614 5.2445 -1.8250 33 1 3.0464 5.7763 -0.1364 34 1 6.5147 4.9737 0.1730 35 1 5.0409 5.5415 0.9936 36 1 5.8665 1.5382 3.3179 37 1 4.6857 6.3489 -2.6084 38 1 5.1519 7.0509 -1.0406 39 1 7.3217 5.8557 -1.1506 40 1 6.8555 5.1537 -2.7184 41 1 6.8210 6.5411 -4.6908 42 1 5.4900 7.4312 -3.9113 43 1 6.7601 9.5328 -4.0839 44 1 6.6184 8.7816 -5.6918 45 1 8.9170 9.3352 -2.9073 46 1 10.2303 8.4502 -3.7207 47 1 9.1527 7.0957 -1.9131 48 1 8.9721 6.3435 -3.5167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612084676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:00 Heat of formation + Delta-G solvation = 55.449081 kcal Electronic energy + Delta-G solvation = -28173.597337 eV Core-core repulsion = 24392.252059 eV Total energy + Delta-G solvation = -3781.345278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.41828 -39.65720 -37.47497 -35.60444 -34.00341 -32.39328 -31.37566 -30.94245 -29.17356 -28.18076 -26.89501 -25.30998 -24.17593 -23.67350 -22.57118 -22.06101 -20.52881 -19.96172 -18.87125 -18.34952 -17.23171 -16.60189 -16.25170 -15.37100 -15.24235 -15.18936 -15.12168 -14.65390 -14.47486 -14.35152 -14.09586 -13.63339 -13.52757 -13.29236 -12.89150 -12.80950 -12.40044 -12.31130 -12.11798 -11.96045 -11.88274 -11.58993 -11.51342 -11.44432 -11.25875 -10.96666 -10.82891 -10.64552 -10.57805 -10.09696 -9.80781 -9.79336 -9.55691 -9.37933 -9.12237 -8.80610 -8.51228 -8.41425 -8.22414 -7.63795 -5.91630 -3.84054 1.33977 1.81134 2.25179 3.33824 3.39506 3.41677 3.55257 3.69894 3.82106 4.50583 4.63263 4.73659 4.80914 4.90222 4.91851 5.02407 5.15763 5.20801 5.24498 5.30540 5.40036 5.41087 5.43132 5.48538 5.49047 5.54882 5.68283 5.68512 5.72520 5.83234 5.85371 5.94169 5.95602 6.10831 6.12691 6.21823 6.29932 6.40628 6.49110 6.68790 6.87512 6.90885 6.97479 7.01349 7.54291 7.71271 7.91529 8.65930 9.04032 9.65878 9.67880 11.19553 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.003404 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.451837 B = 8223.636093 C =10012.936893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.037 4.037 3 C -0.024 4.024 4 N -0.235 5.235 5 N -0.191 5.191 6 C 0.012 3.988 7 C 0.151 3.849 8 N -0.527 5.527 9 C 0.161 3.839 10 C -0.498 4.498 11 H 0.078 0.922 12 C 0.081 3.919 13 N -0.883 5.883 14 Si 0.867 3.133 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.271 1.271 18 C 0.063 3.937 19 C 0.060 3.940 20 N -0.538 5.538 21 C 0.015 3.985 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.018 3.982 26 S 0.106 5.894 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.029 0.971 35 H -0.011 1.011 36 H 0.259 0.741 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.058 0.942 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 6.967 -13.547 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C -0.302 4.302 4 N -0.072 5.072 5 N -0.027 5.027 6 C -0.267 4.267 7 C 0.019 3.981 8 N -0.253 5.253 9 C 0.035 3.965 10 C -0.537 4.537 11 H 0.096 0.904 12 C -0.122 4.122 13 N -0.521 5.521 14 Si 0.695 3.305 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.196 1.196 18 C -0.066 4.066 19 C -0.068 4.068 20 N -0.264 5.264 21 C -0.114 4.114 22 C -0.013 4.013 23 O -0.307 6.307 24 C -0.012 4.012 25 C -0.110 4.110 26 S 0.349 5.651 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.006 0.994 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.105 0.895 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.951 6.931 -13.191 15.190 hybrid contribution 0.828 0.380 1.182 1.492 sum -2.124 7.311 -12.009 14.219 Atomic orbital electron populations 1.21754 0.94161 1.01930 1.02376 1.19986 0.95905 0.87842 1.04133 1.28906 1.06086 1.03618 0.91628 1.71375 1.10612 0.99099 1.26099 1.71449 1.08088 1.07005 1.16118 1.28322 1.05058 1.01597 0.91712 1.20193 0.89433 0.89281 0.99222 1.61991 1.02856 1.35519 1.24885 1.20322 0.94085 0.98130 0.83970 1.21033 1.32880 0.95748 1.04054 0.90401 1.24719 0.95759 0.94658 0.97025 1.69868 1.44733 1.17506 1.19973 0.87016 0.80653 0.81853 0.81003 1.20420 1.21545 1.19629 1.21933 0.94731 0.91795 0.98157 1.22129 0.96214 0.89459 0.98988 1.62170 1.04816 1.39803 1.19639 1.22832 1.00334 0.97999 0.90188 1.22671 0.81062 0.96627 1.00943 1.87960 1.18767 1.94041 1.29973 1.22658 0.96888 0.96385 0.85269 1.22760 0.88765 0.97995 1.01504 1.83013 1.59697 1.08404 1.14029 0.92709 0.91857 0.92059 0.90189 0.88734 0.90235 0.92416 0.95299 0.99379 0.93050 0.91698 0.94515 0.89889 0.93588 0.93876 0.89358 0.92370 0.88649 0.92322 0.88593 0.89539 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.90 37.16 0.37 -1.33 16 2 C -0.04 -0.55 6.54 -27.88 -0.18 -0.73 16 3 C -0.02 -0.45 6.77 -13.30 -0.09 -0.54 16 4 N -0.23 -5.55 11.49 32.58 0.37 -5.18 16 5 N -0.19 -4.61 8.88 32.58 0.29 -4.32 16 6 C 0.01 0.24 4.58 -13.30 -0.06 0.18 16 7 C 0.15 2.70 5.56 -4.97 -0.03 2.68 16 8 N -0.53 -10.20 4.56 -237.51 -1.08 -11.28 16 9 C 0.16 3.78 3.66 -4.98 -0.02 3.76 16 10 C -0.50 -13.69 6.88 -34.44 -0.24 -13.93 16 11 H 0.08 2.27 4.98 -52.48 -0.26 2.00 16 12 C 0.08 2.35 5.47 -17.83 -0.10 2.25 16 13 N -0.88 -26.99 13.96 55.43 0.77 -26.21 16 14 Si 0.87 22.04 27.47 -169.99 -4.67 17.37 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 17 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 18 C 0.06 0.97 4.89 -3.82 -0.02 0.95 16 19 C 0.06 0.91 4.91 -3.82 -0.02 0.89 16 20 N -0.54 -7.00 4.73 -234.30 -1.11 -8.11 16 21 C 0.01 0.16 5.44 -3.72 -0.02 0.14 16 22 C 0.06 0.64 7.01 37.20 0.26 0.90 16 23 O -0.39 -4.57 10.83 -35.23 -0.38 -4.96 16 24 C 0.07 0.67 7.01 37.21 0.26 0.93 16 25 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 26 S 0.11 1.85 22.83 -107.50 -2.45 -0.60 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 33 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 34 H 0.03 0.69 5.04 -51.93 -0.26 0.43 16 35 H -0.01 -0.28 7.41 -51.93 -0.38 -0.67 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.06 0.86 6.31 -51.93 -0.33 0.53 16 38 H 0.04 0.59 8.12 -51.93 -0.42 0.16 16 39 H 0.08 1.43 6.20 -51.93 -0.32 1.11 16 40 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.90 6.38 -51.93 -0.33 0.57 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -33.66 384.24 -10.17 -43.83 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.80 Total: -2.66 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 0.10 Total: -3.67 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.75 Total: -55.10 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.38 Total: -4.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.45 Total: -0.60 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.66 -10.17 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612084676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.279 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds