Wall clock time and date at job start Sat Apr 11 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.47500 * 2 1 4 4 N 1.29414 * 125.70010 * 90.02073 * 3 2 1 5 5 N 1.26396 * 116.47623 * 179.73746 * 4 3 2 6 6 C 1.29409 * 116.47502 * 359.97438 * 5 4 3 7 7 C 1.50707 * 125.69372 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.46829 * 89.97637 * 7 6 5 9 9 C 1.46897 * 111.00373 * 293.95435 * 8 7 6 10 10 C 1.50703 * 109.47344 * 69.99813 * 9 8 7 11 11 H 1.08004 * 119.99558 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00461 * 180.02562 * 10 9 8 13 13 N 1.31503 * 120.00303 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99601 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.46893 * 90.00183 * 14 12 10 16 16 H 1.48497 * 109.46956 * 209.99867 * 14 12 10 17 17 H 1.48494 * 109.47231 * 329.99977 * 14 12 10 18 18 C 1.46905 * 110.99833 * 170.00079 * 8 7 6 19 19 C 1.52997 * 109.46844 * 190.00293 * 18 8 7 20 20 N 1.46905 * 109.46844 * 180.02562 * 19 18 8 21 21 C 1.47013 * 111.00008 * 293.63133 * 20 19 18 22 22 C 1.53091 * 109.25788 * 177.60760 * 21 20 19 23 23 O 1.43019 * 109.25797 * 56.85151 * 22 21 20 24 24 C 1.43015 * 113.73874 * 301.32493 * 23 22 21 25 25 C 1.47019 * 110.99976 * 169.99744 * 20 19 18 26 26 S 1.71215 * 108.61179 * 0.02562 * 6 5 4 27 27 H 1.09001 * 109.46910 * 60.00302 * 1 2 3 28 28 H 1.08996 * 109.47439 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46926 * 300.00592 * 1 2 3 30 30 H 1.09007 * 109.47102 * 239.99217 * 2 1 3 31 31 H 1.08996 * 109.46894 * 120.00188 * 2 1 3 32 32 H 1.09000 * 109.47136 * 209.97649 * 7 6 5 33 33 H 1.09001 * 109.46989 * 329.97993 * 7 6 5 34 34 H 1.08991 * 109.47620 * 190.00357 * 9 8 7 35 35 H 1.09001 * 109.46770 * 310.00307 * 9 8 7 36 36 H 0.97004 * 120.00536 * 179.97438 * 13 12 10 37 37 H 1.09003 * 109.47036 * 309.99876 * 18 8 7 38 38 H 1.08992 * 109.47020 * 69.99779 * 18 8 7 39 39 H 1.09003 * 109.46964 * 299.99628 * 19 18 8 40 40 H 1.08992 * 109.47732 * 59.99922 * 19 18 8 41 41 H 1.09001 * 109.50261 * 297.54126 * 21 20 19 42 42 H 1.09001 * 109.50570 * 57.67403 * 21 20 19 43 43 H 1.08998 * 109.50844 * 296.91843 * 22 21 20 44 44 H 1.09000 * 109.54512 * 176.80106 * 22 21 20 45 45 H 1.08996 * 109.50777 * 298.74043 * 24 23 22 46 46 H 1.09000 * 109.54648 * 178.62778 * 24 23 22 47 47 H 1.09004 * 109.50369 * 302.32424 * 25 20 19 48 48 H 1.09004 * 109.50787 * 62.40988 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2846 2.1326 1.0509 5 7 2.7053 3.3071 0.8483 6 6 2.8378 3.6673 -0.3875 7 6 3.3211 5.0128 -0.8643 8 7 4.7821 4.9830 -1.0150 9 6 5.4423 4.8156 0.2865 10 6 5.1919 3.4215 0.8013 11 1 4.6016 2.7290 0.2194 12 6 5.7162 3.0301 2.0148 13 7 5.4972 1.8138 2.4642 14 14 6.7366 4.2281 3.0214 15 1 5.8471 4.9915 3.9331 16 1 7.7370 3.4762 3.8207 17 1 7.4368 5.1689 2.1105 18 6 5.2654 6.1899 -1.6991 19 6 6.7419 6.0147 -2.0598 20 7 7.2254 7.2218 -2.7434 21 6 6.5704 7.3859 -4.0492 22 6 7.0576 8.6836 -4.6991 23 8 8.4832 8.6497 -4.8090 24 6 9.1537 8.4916 -3.5557 25 6 8.6876 7.1919 -2.8942 26 16 2.3723 2.3602 -1.3906 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5140 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.8614 5.2445 -1.8250 33 1 3.0464 5.7763 -0.1364 34 1 6.5147 4.9737 0.1730 35 1 5.0409 5.5415 0.9936 36 1 5.8665 1.5382 3.3179 37 1 4.6857 6.3489 -2.6084 38 1 5.1519 7.0509 -1.0406 39 1 7.3217 5.8557 -1.1506 40 1 6.8555 5.1537 -2.7184 41 1 6.8210 6.5411 -4.6908 42 1 5.4900 7.4312 -3.9113 43 1 6.7601 9.5328 -4.0839 44 1 6.6184 8.7816 -5.6918 45 1 8.9170 9.3352 -2.9073 46 1 10.2303 8.4502 -3.7207 47 1 9.1527 7.0957 -1.9131 48 1 8.9721 6.3435 -3.5167 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612084676.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:59 Heat of formation + Delta-G solvation = 29.104254 kcal Electronic energy + Delta-G solvation = -28174.739735 eV Core-core repulsion = 24392.252059 eV Total energy + Delta-G solvation = -3782.487676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01593 -40.57816 -38.87782 -36.69407 -35.24718 -34.48424 -32.39786 -32.08197 -30.65175 -29.86012 -28.15795 -26.54617 -25.33241 -24.92454 -24.03751 -23.42476 -21.66726 -21.23515 -20.37024 -19.88887 -19.17086 -17.64245 -17.12882 -16.80371 -16.62949 -16.46788 -16.17757 -15.95873 -15.78932 -15.65360 -15.33387 -15.14938 -14.73870 -14.62632 -14.47899 -14.15962 -14.04167 -13.60807 -13.35388 -13.27433 -13.22405 -12.90873 -12.71776 -12.52804 -12.45653 -12.35559 -12.24748 -12.05314 -11.80122 -11.61588 -11.40910 -11.39289 -11.01707 -10.67966 -10.65932 -10.63277 -10.22069 -10.00509 -9.43754 -9.19755 -8.09979 -6.03544 -0.14801 0.36358 0.72194 1.29346 1.31928 1.37710 2.06650 2.39455 2.61922 2.96682 3.22406 3.31158 3.39993 3.81440 3.82461 3.95489 4.02964 4.09119 4.17747 4.20629 4.23906 4.34574 4.35030 4.38434 4.50393 4.53860 4.63144 4.64889 4.73855 4.76900 4.83197 4.85674 4.91444 4.92845 4.97520 4.98121 5.01226 5.03132 5.10136 5.15562 5.33190 5.63284 5.83425 5.95184 6.02307 6.18560 6.22208 6.61996 6.88188 7.50717 8.09469 9.03192 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012265 B = 0.003404 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.451837 B = 8223.636093 C =10012.936893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.041 4.041 3 C -0.034 4.034 4 N -0.288 5.288 5 N -0.241 5.241 6 C -0.009 4.009 7 C 0.148 3.852 8 N -0.534 5.534 9 C 0.171 3.829 10 C -0.485 4.485 11 H 0.058 0.942 12 C 0.024 3.976 13 N -0.927 5.927 14 Si 0.919 3.081 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.252 1.252 18 C 0.068 3.932 19 C 0.069 3.931 20 N -0.542 5.542 21 C 0.014 3.986 22 C 0.064 3.936 23 O -0.405 6.405 24 C 0.068 3.932 25 C 0.016 3.984 26 S 0.183 5.817 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.054 0.946 34 H 0.029 0.971 35 H -0.023 1.023 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.037 0.963 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.085 0.915 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 8.378 -16.441 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.082 4.082 3 C -0.313 4.313 4 N -0.125 5.125 5 N -0.077 5.077 6 C -0.288 4.288 7 C 0.016 3.984 8 N -0.259 5.259 9 C 0.044 3.956 10 C -0.524 4.524 11 H 0.076 0.924 12 C -0.174 4.174 13 N -0.569 5.569 14 Si 0.746 3.254 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.176 1.176 18 C -0.060 4.060 19 C -0.060 4.060 20 N -0.268 5.268 21 C -0.114 4.114 22 C -0.013 4.013 23 O -0.324 6.324 24 C -0.009 4.009 25 C -0.113 4.113 26 S 0.426 5.574 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.072 0.928 34 H 0.046 0.954 35 H -0.006 1.006 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.132 0.868 47 H 0.103 0.897 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.381 8.374 -16.116 18.474 hybrid contribution 0.874 -0.091 1.910 2.102 sum -2.507 8.283 -14.207 16.635 Atomic orbital electron populations 1.21712 0.91575 1.03828 1.02183 1.20239 0.98058 0.85396 1.04534 1.29649 1.04462 1.05160 0.92031 1.71302 1.12953 0.99806 1.28450 1.71363 1.09979 1.07919 1.18454 1.28836 1.04470 1.03564 0.91932 1.20444 0.88625 0.87977 1.01342 1.61861 1.03625 1.37971 1.22463 1.20031 0.94334 0.95356 0.85853 1.21318 1.30652 0.97093 1.03358 0.92351 1.25414 0.97484 0.95963 0.98537 1.70024 1.47000 1.19474 1.20353 0.86164 0.79270 0.80237 0.79762 1.21160 1.21655 1.17574 1.21994 0.95192 0.89944 0.98878 1.21924 0.95812 0.90229 0.97988 1.62186 1.05600 1.38174 1.20830 1.22931 1.00960 0.98475 0.89027 1.22813 0.80306 0.95950 1.02229 1.87945 1.19776 1.93997 1.30636 1.22724 0.97865 0.95438 0.84847 1.22826 0.88164 0.98748 1.01522 1.82536 1.57826 1.05771 1.11266 0.91382 0.88914 0.93724 0.87698 0.90365 0.85766 0.92803 0.95354 1.00574 0.93737 0.88411 0.94512 0.92368 0.94617 0.94516 0.88043 0.91897 0.86432 0.91935 0.86774 0.89696 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.90 71.98 0.71 -2.25 16 2 C -0.04 -1.18 6.54 29.85 0.20 -0.99 16 3 C -0.03 -1.31 6.77 88.46 0.60 -0.71 16 4 N -0.29 -14.05 11.49 -50.85 -0.58 -14.63 16 5 N -0.24 -11.94 8.88 -50.85 -0.45 -12.39 16 6 C -0.01 -0.35 4.58 88.47 0.41 0.06 16 7 C 0.15 5.01 5.56 85.56 0.48 5.49 16 8 N -0.53 -19.81 4.56 -905.36 -4.13 -23.94 16 9 C 0.17 8.00 3.66 85.56 0.31 8.31 16 10 C -0.48 -27.10 6.88 25.60 0.18 -26.93 16 11 H 0.06 3.46 4.98 -2.91 -0.01 3.44 16 12 C 0.02 1.43 5.47 84.66 0.46 1.89 16 13 N -0.93 -58.94 13.96 21.44 0.30 -58.64 16 14 Si 0.92 46.48 27.47 68.60 1.88 48.36 16 15 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 16 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 17 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 18 C 0.07 1.93 4.89 86.30 0.42 2.36 16 19 C 0.07 1.99 4.91 86.30 0.42 2.41 16 20 N -0.54 -13.02 4.73 -895.20 -4.23 -17.25 16 21 C 0.01 0.27 5.44 86.31 0.47 0.74 16 22 C 0.06 1.07 7.01 72.01 0.50 1.58 16 23 O -0.40 -8.52 10.83 -148.98 -1.61 -10.13 16 24 C 0.07 1.26 7.01 72.01 0.50 1.76 16 25 C 0.02 0.35 5.64 86.31 0.49 0.83 16 26 S 0.18 6.06 22.83 -56.49 -1.29 4.77 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.12 3.05 7.93 -2.39 -0.02 3.03 16 33 H 0.05 1.88 8.01 -2.39 -0.02 1.86 16 34 H 0.03 1.34 5.04 -2.39 -0.01 1.33 16 35 H -0.02 -1.15 7.41 -2.39 -0.02 -1.16 16 36 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.10 2.17 6.31 -2.39 -0.02 2.16 16 38 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 39 H 0.06 1.97 6.20 -2.39 -0.01 1.96 16 40 H 0.04 1.10 8.12 -2.39 -0.02 1.08 16 41 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.10 1.67 6.38 -2.39 -0.02 1.65 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.08 1.87 8.09 -2.38 -0.02 1.85 16 48 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -76.45 384.24 -3.07 -79.52 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.89 Total: 9.76 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 6.15 Total: -5.44 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -9.10 Total: -126.85 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -1.61 Total: -10.13 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.88 Total: 48.36 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.29 Total: 4.77 kcal Total: -76.45 -3.07 -79.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612084676.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.628 kcal (2) G-P(sol) polarization free energy of solvation -76.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds