Wall clock time and date at job start Sat Apr 11 2020 06:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30472 * 125.84449 * 2 1 4 4 C 1.34208 * 109.82637 * 179.97438 * 3 2 1 5 5 C 1.47714 * 125.64721 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00283 * 172.30116 * 5 4 3 7 7 N 1.34783 * 119.99765 * 352.30015 * 5 4 3 8 8 C 1.36858 * 119.99833 * 184.73587 * 7 5 4 9 9 H 1.08006 * 119.99843 * 221.18132 * 8 7 5 10 10 C 1.39041 * 120.00107 * 41.18692 * 8 7 5 11 11 N 1.31370 * 120.00150 * 0.66327 * 10 8 7 12 12 Si 1.86801 * 119.99915 * 180.65819 * 10 8 7 13 13 H 1.48500 * 109.47432 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46788 * 120.00053 * 12 10 8 15 15 H 1.48504 * 109.47181 * 239.99821 * 12 10 8 16 16 C 1.46503 * 119.99651 * 4.73430 * 7 5 4 17 17 C 1.54265 * 110.03179 * 230.58119 * 16 7 5 18 18 C 1.54963 * 104.16274 * 217.13949 * 17 16 7 19 19 C 1.54889 * 102.77509 * 37.88813 * 18 17 16 20 20 C 1.53875 * 110.02811 * 113.36773 * 16 7 5 21 21 N 1.31810 * 108.70953 * 359.71554 * 4 3 2 22 22 N 1.35067 * 125.83884 * 179.97438 * 2 1 3 23 23 C 1.40121 * 126.76415 * 0.02562 * 22 2 1 24 24 C 1.38860 * 120.06670 * 144.99807 * 23 22 2 25 25 C 1.38116 * 119.92992 * 179.97438 * 24 23 22 26 26 C 1.38282 * 120.06650 * 0.02562 * 25 24 23 27 27 C 1.38285 * 120.14045 * 359.97438 * 26 25 24 28 28 C 1.38119 * 120.06475 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47014 * 270.02746 * 1 2 3 30 30 H 1.09004 * 109.47174 * 30.02471 * 1 2 3 31 31 H 1.08999 * 109.47364 * 150.02422 * 1 2 3 32 32 H 0.96992 * 119.99802 * 184.63541 * 11 10 8 33 33 H 1.09001 * 110.02062 * 351.97714 * 16 7 5 34 34 H 1.09000 * 110.48561 * 335.78498 * 17 16 7 35 35 H 1.08997 * 110.48250 * 98.43043 * 17 16 7 36 36 H 1.09004 * 110.72442 * 279.57974 * 18 17 16 37 37 H 1.09000 * 110.92668 * 156.29356 * 18 17 16 38 38 H 1.09007 * 110.48916 * 203.40481 * 19 18 17 39 39 H 1.09003 * 110.60295 * 80.81869 * 19 18 17 40 40 H 1.09001 * 110.03241 * 238.56354 * 20 16 7 41 41 H 1.08999 * 110.03748 * 359.94867 * 20 16 7 42 42 H 1.08000 * 120.03429 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.96363 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.93069 * 179.71676 * 26 25 24 45 45 H 1.07994 * 119.96528 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.02896 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2711 1.0576 0.0000 4 6 3.5610 0.6873 0.0006 5 6 4.7197 1.6035 0.0002 6 8 5.8439 1.1621 0.1419 7 7 4.5308 2.9287 -0.1572 8 6 5.6085 3.7666 -0.2547 9 1 5.5988 4.7202 0.2525 10 6 6.7158 3.3905 -1.0068 11 7 6.7223 2.2364 -1.6345 12 14 8.1942 4.5262 -1.1250 13 1 7.9385 5.7557 -0.3324 14 1 9.3942 3.8338 -0.5903 15 1 8.4254 4.8916 -2.5457 16 6 3.1719 3.4721 -0.2238 17 6 3.0275 4.3841 -1.4596 18 6 2.1113 5.5362 -0.9755 19 6 2.5926 5.7688 0.4782 20 6 2.8952 4.3519 1.0079 21 7 3.6229 -0.6294 0.0071 22 7 2.2979 -1.0949 0.0005 23 6 1.8789 -2.4321 0.0006 24 6 2.6105 -3.3904 -0.6883 25 6 2.1953 -4.7077 -0.6859 26 6 1.0520 -5.0724 0.0012 27 6 0.3213 -4.1204 0.6882 28 6 0.7314 -2.8015 0.6895 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 7.5193 1.9439 -2.1034 33 1 2.4471 2.6594 -0.2726 34 1 3.9998 4.7720 -1.7631 35 1 2.5586 3.8421 -2.2808 36 1 1.0652 5.2300 -0.9917 37 1 2.2595 6.4315 -1.5793 38 1 1.8062 6.2375 1.0701 39 1 3.4942 6.3813 0.4904 40 1 2.0355 3.9668 1.5563 41 1 3.7716 4.3739 1.6557 42 1 3.5038 -3.1061 -1.2247 43 1 2.7641 -5.4535 -1.2212 44 1 0.7268 -6.1023 -0.0022 45 1 -0.5709 -4.4084 1.2241 46 1 0.1605 -2.0585 1.2266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737642052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:03 Heat of formation + Delta-G solvation = 118.059443 kcal Electronic energy + Delta-G solvation = -30028.187426 eV Core-core repulsion = 26114.113186 eV Total energy + Delta-G solvation = -3914.074241 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98810 -39.32225 -38.43810 -36.44292 -34.09248 -33.27885 -32.51225 -31.47328 -31.07158 -29.56304 -27.91141 -27.87035 -26.67631 -25.57463 -23.41076 -23.09521 -21.80916 -20.51920 -19.94527 -19.56639 -18.94401 -17.99427 -16.73517 -16.15009 -15.97552 -15.84639 -14.97422 -14.81042 -14.56983 -14.40895 -14.24188 -13.83196 -13.70589 -13.46113 -13.25052 -13.20533 -12.78981 -12.68111 -12.48977 -12.37086 -11.93943 -11.68865 -11.36269 -11.25394 -10.98942 -10.85049 -10.68371 -10.48587 -10.43107 -10.29906 -10.25312 -10.22919 -10.05460 -9.95352 -9.24785 -9.22019 -8.85250 -8.55788 -8.45405 -8.09848 -7.01460 -5.89766 -3.82973 0.74759 1.09602 1.98201 2.40165 2.89117 3.33809 3.39174 3.42405 3.50549 4.12370 4.30861 4.50428 4.65283 4.72891 4.82391 4.89687 4.94841 5.11149 5.19125 5.27469 5.28614 5.38669 5.42747 5.46293 5.56154 5.57388 5.69015 5.74585 5.84357 6.07622 6.17042 6.18867 6.24071 6.28197 6.41710 6.41839 6.49179 6.52899 6.61774 6.62855 6.67875 6.81100 6.85805 7.02511 7.14094 7.24173 7.65356 7.66409 8.25140 8.40567 9.09322 9.27055 9.69130 10.40432 11.02640 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.003668 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.040216 B = 7632.486351 C = 9242.260421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.269 3.731 3 N -0.509 5.509 4 C 0.237 3.763 5 C 0.525 3.475 6 O -0.491 6.491 7 N -0.421 5.421 8 C -0.309 4.309 9 H 0.087 0.913 10 C 0.038 3.962 11 N -0.805 5.805 12 Si 0.913 3.087 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.080 3.920 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.118 4.118 20 C -0.126 4.126 21 N -0.270 5.270 22 N -0.347 5.347 23 C 0.158 3.842 24 C -0.106 4.106 25 C -0.101 4.101 26 C -0.125 4.125 27 C -0.101 4.101 28 C -0.132 4.132 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.262 0.738 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.127 0.873 45 H 0.132 0.868 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.593 -8.179 1.978 19.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.004 4.004 3 N -0.239 5.239 4 C -0.046 4.046 5 C 0.308 3.692 6 O -0.363 6.363 7 N -0.142 5.142 8 C -0.438 4.438 9 H 0.104 0.896 10 C -0.172 4.172 11 N -0.441 5.441 12 Si 0.741 3.259 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.211 1.211 16 C -0.025 4.025 17 C -0.162 4.162 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.164 4.164 21 N -0.096 5.096 22 N -0.134 5.134 23 C 0.065 3.935 24 C -0.126 4.126 25 C -0.119 4.119 26 C -0.144 4.144 27 C -0.120 4.120 28 C -0.153 4.153 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.286 -8.589 1.910 18.511 hybrid contribution 0.648 0.399 -0.175 0.780 sum -15.639 -8.190 1.736 17.739 Atomic orbital electron populations 1.20533 0.84062 1.05014 1.04202 1.24755 0.96661 0.82578 0.96443 1.70256 1.01917 1.26226 1.25485 1.25465 0.92389 0.90628 0.96129 1.16271 0.84058 0.82011 0.86890 1.90665 1.21702 1.75055 1.48877 1.43108 1.04645 1.03734 1.62691 1.19120 0.95184 1.00719 1.28730 0.89585 1.25399 0.99871 0.96235 0.95681 1.70050 1.28408 1.17831 1.27813 0.86084 0.81998 0.80209 0.77629 1.19502 1.20904 1.21060 1.23140 0.87825 0.98857 0.92664 1.22627 1.00302 0.95722 0.97529 1.22422 0.98757 0.98396 0.96234 1.22278 0.99937 0.97430 0.95931 1.22423 1.00606 0.94674 0.98745 1.78747 0.93259 1.11928 1.25694 1.47926 1.05293 1.04614 1.55520 1.17542 0.95896 0.81049 0.99014 1.21168 1.00409 0.92537 0.98531 1.21102 0.96600 0.95292 0.98940 1.21246 0.95467 0.99781 0.97887 1.20976 0.99990 0.91843 0.99177 1.21100 0.96832 0.97513 0.99859 0.89042 0.88249 0.89888 0.92704 0.83418 0.89767 0.93287 0.92499 0.92642 0.93113 0.91964 0.92944 0.91647 0.84613 0.85077 0.85486 0.85039 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 8.69 36.01 0.31 -0.46 16 2 C 0.27 4.41 7.81 -155.41 -1.21 3.19 16 3 N -0.51 -10.30 7.41 -8.57 -0.06 -10.36 16 4 C 0.24 5.80 7.71 -156.47 -1.21 4.59 16 5 C 0.52 14.87 6.83 -12.39 -0.08 14.78 16 6 O -0.49 -15.78 14.09 5.28 0.07 -15.71 16 7 N -0.42 -11.07 2.47 -107.65 -0.27 -11.34 16 8 C -0.31 -8.50 7.26 -15.01 -0.11 -8.61 16 9 H 0.09 2.27 7.60 -52.48 -0.40 1.87 16 10 C 0.04 1.09 4.93 -17.45 -0.09 1.00 16 11 N -0.80 -24.52 10.32 55.50 0.57 -23.95 16 12 Si 0.91 21.80 29.56 -169.99 -5.02 16.78 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 16 C 0.08 1.72 3.14 -66.81 -0.21 1.51 16 17 C -0.12 -2.46 6.39 -25.03 -0.16 -2.62 16 18 C -0.12 -1.91 6.91 -24.70 -0.17 -2.08 16 19 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 20 C -0.13 -2.38 6.28 -25.61 -0.16 -2.54 16 21 N -0.27 -6.30 12.51 32.02 0.40 -5.90 16 22 N -0.35 -6.23 3.75 -8.04 -0.03 -6.26 16 23 C 0.16 2.26 6.30 -83.61 -0.53 1.73 16 24 C -0.11 -1.44 9.80 -39.40 -0.39 -1.83 16 25 C -0.10 -1.01 10.04 -39.61 -0.40 -1.41 16 26 C -0.13 -1.03 10.04 -39.55 -0.40 -1.43 16 27 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 28 C -0.13 -1.38 8.32 -39.40 -0.33 -1.71 16 29 H 0.09 0.68 7.77 -51.93 -0.40 0.28 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.66 6.91 -51.93 -0.36 0.30 16 32 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 33 H 0.15 3.15 3.58 -85.98 -0.31 2.84 16 34 H 0.08 1.90 6.75 -51.93 -0.35 1.55 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.37 7.48 -51.93 -0.39 0.98 16 42 H 0.14 2.07 8.06 -52.49 -0.42 1.65 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.13 1.14 6.15 -52.49 -0.32 0.82 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -36.24 372.53 -10.73 -46.97 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.32 Total: 3.36 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -5.69 Total: 0.80 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.61 Total: -57.81 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.07 Total: -15.71 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.24 -10.73 -46.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737642052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.033 kcal (2) G-P(sol) polarization free energy of solvation -36.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds