Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30472 * 125.84449 * 2 1 4 4 C 1.34208 * 109.82637 * 179.97438 * 3 2 1 5 5 C 1.47714 * 125.64721 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00283 * 172.30116 * 5 4 3 7 7 N 1.34783 * 119.99765 * 352.30015 * 5 4 3 8 8 C 1.36858 * 119.99833 * 184.73587 * 7 5 4 9 9 H 1.08006 * 119.99843 * 221.18132 * 8 7 5 10 10 C 1.39041 * 120.00107 * 41.18692 * 8 7 5 11 11 N 1.31370 * 120.00150 * 0.66327 * 10 8 7 12 12 Si 1.86801 * 119.99915 * 180.65819 * 10 8 7 13 13 H 1.48500 * 109.47432 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46788 * 120.00053 * 12 10 8 15 15 H 1.48504 * 109.47181 * 239.99821 * 12 10 8 16 16 C 1.46503 * 119.99651 * 4.73430 * 7 5 4 17 17 C 1.54265 * 110.03179 * 230.58119 * 16 7 5 18 18 C 1.54963 * 104.16274 * 217.13949 * 17 16 7 19 19 C 1.54889 * 102.77509 * 37.88813 * 18 17 16 20 20 C 1.53875 * 110.02811 * 113.36773 * 16 7 5 21 21 N 1.31810 * 108.70953 * 359.71554 * 4 3 2 22 22 N 1.35067 * 125.83884 * 179.97438 * 2 1 3 23 23 C 1.40121 * 126.76415 * 0.02562 * 22 2 1 24 24 C 1.38860 * 120.06670 * 144.99807 * 23 22 2 25 25 C 1.38116 * 119.92992 * 179.97438 * 24 23 22 26 26 C 1.38282 * 120.06650 * 0.02562 * 25 24 23 27 27 C 1.38285 * 120.14045 * 359.97438 * 26 25 24 28 28 C 1.38119 * 120.06475 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47014 * 270.02746 * 1 2 3 30 30 H 1.09004 * 109.47174 * 30.02471 * 1 2 3 31 31 H 1.08999 * 109.47364 * 150.02422 * 1 2 3 32 32 H 0.96992 * 119.99802 * 184.63541 * 11 10 8 33 33 H 1.09001 * 110.02062 * 351.97714 * 16 7 5 34 34 H 1.09000 * 110.48561 * 335.78498 * 17 16 7 35 35 H 1.08997 * 110.48250 * 98.43043 * 17 16 7 36 36 H 1.09004 * 110.72442 * 279.57974 * 18 17 16 37 37 H 1.09000 * 110.92668 * 156.29356 * 18 17 16 38 38 H 1.09007 * 110.48916 * 203.40481 * 19 18 17 39 39 H 1.09003 * 110.60295 * 80.81869 * 19 18 17 40 40 H 1.09001 * 110.03241 * 238.56354 * 20 16 7 41 41 H 1.08999 * 110.03748 * 359.94867 * 20 16 7 42 42 H 1.08000 * 120.03429 * 0.02562 * 24 23 22 43 43 H 1.08001 * 119.96363 * 180.02562 * 25 24 23 44 44 H 1.08005 * 119.93069 * 179.71676 * 26 25 24 45 45 H 1.07994 * 119.96528 * 180.02562 * 27 26 25 46 46 H 1.07998 * 120.02896 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2711 1.0576 0.0000 4 6 3.5610 0.6873 0.0006 5 6 4.7197 1.6035 0.0002 6 8 5.8439 1.1621 0.1419 7 7 4.5308 2.9287 -0.1572 8 6 5.6085 3.7666 -0.2547 9 1 5.5988 4.7202 0.2525 10 6 6.7158 3.3905 -1.0068 11 7 6.7223 2.2364 -1.6345 12 14 8.1942 4.5262 -1.1250 13 1 7.9385 5.7557 -0.3324 14 1 9.3942 3.8338 -0.5903 15 1 8.4254 4.8916 -2.5457 16 6 3.1719 3.4721 -0.2238 17 6 3.0275 4.3841 -1.4596 18 6 2.1113 5.5362 -0.9755 19 6 2.5926 5.7688 0.4782 20 6 2.8952 4.3519 1.0079 21 7 3.6229 -0.6294 0.0071 22 7 2.2979 -1.0949 0.0005 23 6 1.8789 -2.4321 0.0006 24 6 2.6105 -3.3904 -0.6883 25 6 2.1953 -4.7077 -0.6859 26 6 1.0520 -5.0724 0.0012 27 6 0.3213 -4.1204 0.6882 28 6 0.7314 -2.8015 0.6895 29 1 -0.3633 0.0005 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 7.5193 1.9439 -2.1034 33 1 2.4471 2.6594 -0.2726 34 1 3.9998 4.7720 -1.7631 35 1 2.5586 3.8421 -2.2808 36 1 1.0652 5.2300 -0.9917 37 1 2.2595 6.4315 -1.5793 38 1 1.8062 6.2375 1.0701 39 1 3.4942 6.3813 0.4904 40 1 2.0355 3.9668 1.5563 41 1 3.7716 4.3739 1.6557 42 1 3.5038 -3.1061 -1.2247 43 1 2.7641 -5.4535 -1.2212 44 1 0.7268 -6.1023 -0.0022 45 1 -0.5709 -4.4084 1.2241 46 1 0.1605 -2.0585 1.2266 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737642052.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 96.231883 kcal Electronic energy + Delta-G solvation = -30029.133940 eV Core-core repulsion = 26114.113186 eV Total energy + Delta-G solvation = -3915.020755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45248 -40.56077 -39.95956 -38.23841 -35.38074 -35.20760 -33.81283 -33.46101 -31.94732 -30.70371 -29.36861 -29.09236 -28.37071 -27.42437 -25.00566 -24.00552 -23.10422 -21.79363 -21.42837 -21.19271 -20.67181 -19.30709 -18.23937 -17.72285 -17.32733 -17.16309 -16.65756 -16.37519 -15.85114 -15.80600 -15.41807 -15.33631 -15.07253 -14.94246 -14.56269 -14.21626 -14.16033 -14.03084 -13.75096 -13.53434 -13.36119 -13.07060 -12.98388 -12.67668 -12.55449 -12.45023 -12.25471 -12.10950 -12.00751 -11.83457 -11.80274 -11.73514 -11.53561 -11.33776 -10.91711 -10.76639 -10.35582 -10.08386 -10.04152 -9.52715 -9.10779 -8.04444 -6.02933 -0.30583 0.29510 0.63431 1.13314 1.30707 1.38970 1.43265 1.53193 2.30081 2.64825 2.74749 2.88376 3.13787 3.25179 3.59858 3.72164 3.87246 3.95314 4.01637 4.04750 4.19176 4.32142 4.38756 4.42777 4.53428 4.63226 4.63940 4.73152 4.79922 4.88952 4.92697 4.96542 4.97595 5.00538 5.06360 5.17254 5.20326 5.27791 5.33080 5.33362 5.38049 5.43019 5.46904 5.61380 5.65911 5.71262 5.94119 6.12550 6.19370 6.78014 6.98453 7.22142 7.61639 8.31988 8.88497 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013941 B = 0.003668 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.040216 B = 7632.486351 C = 9242.260421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.279 3.721 3 N -0.525 5.525 4 C 0.211 3.789 5 C 0.509 3.491 6 O -0.552 6.552 7 N -0.426 5.426 8 C -0.319 4.319 9 H 0.093 0.907 10 C -0.017 4.017 11 N -0.850 5.850 12 Si 0.983 3.017 13 H -0.249 1.249 14 H -0.293 1.293 15 H -0.276 1.276 16 C 0.067 3.933 17 C -0.125 4.125 18 C -0.105 4.105 19 C -0.111 4.111 20 C -0.121 4.121 21 N -0.313 5.313 22 N -0.338 5.338 23 C 0.110 3.890 24 C -0.136 4.136 25 C -0.103 4.103 26 C -0.108 4.108 27 C -0.088 4.088 28 C -0.122 4.122 29 H 0.126 0.874 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.255 0.745 33 H 0.157 0.843 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.097 0.903 43 H 0.149 0.851 44 H 0.167 0.833 45 H 0.177 0.823 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.731 -8.680 3.076 24.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.006 3.994 3 N -0.255 5.255 4 C -0.072 4.072 5 C 0.294 3.706 6 O -0.429 6.429 7 N -0.146 5.146 8 C -0.448 4.448 9 H 0.110 0.890 10 C -0.223 4.223 11 N -0.487 5.487 12 Si 0.807 3.193 13 H -0.173 1.173 14 H -0.219 1.219 15 H -0.201 1.201 16 C -0.037 4.037 17 C -0.163 4.163 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.160 4.160 21 N -0.142 5.142 22 N -0.124 5.124 23 C 0.019 3.981 24 C -0.156 4.156 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.106 4.106 28 C -0.143 4.143 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.126 0.874 32 H 0.064 0.936 33 H 0.173 0.827 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.116 0.884 43 H 0.167 0.833 44 H 0.184 0.816 45 H 0.194 0.806 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.502 -9.071 3.006 23.530 hybrid contribution 2.021 0.251 -0.471 2.090 sum -19.481 -8.821 2.536 21.534 Atomic orbital electron populations 1.20951 0.78634 1.06976 1.06941 1.25964 0.98955 0.80964 0.93473 1.70024 1.00215 1.28092 1.27175 1.24621 0.93128 0.90544 0.98910 1.16827 0.84627 0.83098 0.86084 1.90587 1.24298 1.76456 1.51536 1.43396 1.06374 1.03353 1.61468 1.19416 0.96105 1.00867 1.28374 0.88985 1.26367 1.03125 0.97456 0.95320 1.70252 1.28719 1.20235 1.29541 0.85037 0.77561 0.78635 0.78096 1.17269 1.21922 1.20125 1.23516 0.85468 0.99894 0.94784 1.22578 0.99730 0.97107 0.96879 1.22380 0.99030 0.97127 0.95763 1.22259 1.00732 0.95379 0.96521 1.22363 1.00149 0.96279 0.97188 1.78559 0.97579 1.11836 1.26257 1.47977 1.03415 1.06615 1.54441 1.18065 0.98355 0.79398 1.02293 1.21121 0.99987 0.94600 0.99909 1.21357 0.97711 0.93793 0.99302 1.21764 0.93641 1.01817 0.95398 1.21533 1.00767 0.90362 0.97969 1.21424 0.94974 0.99327 0.98527 0.85557 0.86749 0.87403 0.93554 0.82744 0.93132 0.93604 0.89741 0.90840 0.89491 0.93034 0.90831 0.94568 0.88433 0.83346 0.81551 0.80563 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 8.69 71.24 0.62 -0.58 16 2 C 0.28 8.97 7.81 138.13 1.08 10.05 16 3 N -0.52 -21.80 7.41 -181.02 -1.34 -23.15 16 4 C 0.21 11.10 7.71 137.10 1.06 12.16 16 5 C 0.51 31.28 6.83 86.75 0.59 31.87 16 6 O -0.55 -38.84 14.09 -4.03 -0.06 -38.90 16 7 N -0.43 -23.92 2.47 -612.75 -1.51 -25.43 16 8 C -0.32 -18.59 7.26 84.10 0.61 -17.98 16 9 H 0.09 5.09 7.60 -2.91 -0.02 5.07 16 10 C -0.02 -1.03 4.93 84.95 0.42 -0.61 16 11 N -0.85 -55.93 10.32 21.68 0.22 -55.71 16 12 Si 0.98 47.15 29.56 68.60 2.03 49.18 16 13 H -0.25 -10.95 7.11 99.48 0.71 -10.25 16 14 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 15 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 16 C 0.07 2.95 3.14 45.71 0.14 3.10 16 17 C -0.12 -5.04 6.39 31.69 0.20 -4.84 16 18 C -0.11 -3.08 6.91 31.91 0.22 -2.86 16 19 C -0.11 -3.36 6.83 31.67 0.22 -3.15 16 20 C -0.12 -4.55 6.28 31.32 0.20 -4.35 16 21 N -0.31 -15.85 12.51 -52.59 -0.66 -16.51 16 22 N -0.34 -12.51 3.75 -179.34 -0.67 -13.18 16 23 C 0.11 3.11 6.30 38.11 0.24 3.35 16 24 C -0.14 -3.86 9.80 22.39 0.22 -3.64 16 25 C -0.10 -1.92 10.04 22.25 0.22 -1.69 16 26 C -0.11 -1.28 10.04 22.29 0.22 -1.06 16 27 C -0.09 -0.96 10.04 22.25 0.22 -0.74 16 28 C -0.12 -2.12 8.32 22.39 0.19 -1.93 16 29 H 0.13 1.20 7.77 -2.39 -0.02 1.18 16 30 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.11 1.21 6.91 -2.39 -0.02 1.19 16 32 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 33 H 0.16 6.73 3.58 -69.62 -0.25 6.48 16 34 H 0.05 2.37 6.75 -2.39 -0.02 2.36 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.04 1.55 7.48 -2.39 -0.02 1.53 16 42 H 0.10 3.42 8.06 -2.91 -0.02 3.39 16 43 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 44 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 45 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 46 H 0.16 1.90 6.15 -2.91 -0.02 1.88 16 Total: -1.00 -92.86 372.53 5.44 -87.42 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.76 Total: 19.20 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 6.67 Total: 17.09 kcal Atomic # 7 Polarization: -130.02 SS G_CDS: -3.96 Total: -133.98 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.06 Total: -38.90 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -92.86 5.44 -87.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737642052.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.647 kcal (2) G-P(sol) polarization free energy of solvation -92.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds