Wall clock time and date at job start Sat Apr 11 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46962 * 2 1 4 4 C 1.53005 * 109.46763 * 119.99700 * 2 1 3 5 5 N 1.46502 * 109.46764 * 174.10785 * 4 2 1 6 6 C 1.46496 * 120.00326 * 276.68545 * 5 4 2 7 7 C 1.50700 * 109.47514 * 270.00181 * 6 5 4 8 8 H 1.08009 * 119.99474 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00487 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00199 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47303 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47228 * 120.00106 * 11 9 7 14 14 H 1.48504 * 109.46908 * 239.99479 * 11 9 7 15 15 C 1.34780 * 119.99948 * 96.68614 * 5 4 2 16 16 O 1.21273 * 120.00341 * 185.40442 * 15 5 4 17 17 C 1.50701 * 119.99543 * 5.40358 * 15 5 4 18 18 S 1.80999 * 109.46833 * 174.69249 * 17 15 5 19 19 C 1.76208 * 100.00140 * 180.02562 * 18 17 15 20 20 N 1.31281 * 126.48201 * 0.02562 * 19 18 17 21 21 N 1.28525 * 109.85429 * 179.97438 * 20 19 18 22 22 C 1.30294 * 110.07946 * 0.02562 * 21 20 19 23 23 N 1.36531 * 126.48352 * 180.02562 * 19 18 17 24 24 C 1.46505 * 127.14698 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47031 * 120.00306 * 24 23 19 26 26 C 1.53003 * 109.47166 * 240.00414 * 24 23 19 27 27 H 1.08997 * 109.47133 * 300.00034 * 1 2 3 28 28 H 1.08997 * 109.46939 * 60.00426 * 1 2 3 29 29 H 1.09006 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47194 * 239.99457 * 2 1 3 31 31 H 1.09001 * 109.47099 * 304.69975 * 3 2 1 32 32 H 1.08994 * 109.47433 * 64.70662 * 3 2 1 33 33 H 1.09004 * 109.46725 * 184.70589 * 3 2 1 34 34 H 1.09004 * 109.46964 * 54.11405 * 4 2 1 35 35 H 1.08991 * 109.47294 * 294.10840 * 4 2 1 36 36 H 1.09002 * 109.47159 * 30.00521 * 6 5 4 37 37 H 1.09004 * 109.47410 * 150.00213 * 6 5 4 38 38 H 0.97002 * 119.99688 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.47504 * 54.69716 * 17 15 5 40 40 H 1.09000 * 109.47496 * 294.69003 * 17 15 5 41 41 H 1.08000 * 126.33897 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.46722 * 0.02562 * 24 23 19 43 43 H 1.09000 * 109.47306 * 300.00134 * 25 24 23 44 44 H 1.08996 * 109.47308 * 60.00432 * 25 24 23 45 45 H 1.09005 * 109.47345 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.46886 * 59.99977 * 26 24 23 47 47 H 1.09004 * 109.46686 * 179.97438 * 26 24 23 48 48 H 1.09000 * 109.47035 * 300.00078 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4981 -0.8452 1.1806 6 6 4.1050 -1.9449 0.4265 7 6 4.2994 -3.1306 1.3360 8 1 4.0004 -3.0711 2.3722 9 6 4.8590 -4.2913 0.8456 10 7 5.2228 -4.3638 -0.4162 11 14 5.0994 -5.7612 1.9729 12 1 4.6114 -5.4257 3.3347 13 1 4.3360 -6.9202 1.4446 14 1 6.5424 -6.1062 2.0356 15 6 4.2812 0.0524 1.8111 16 8 5.4854 0.0083 1.6744 17 6 3.6604 1.1108 2.6859 18 16 4.9666 2.0556 3.5089 19 6 3.9865 3.1873 4.4382 20 7 2.6753 3.2484 4.4611 21 7 2.2959 4.1923 5.2464 22 6 3.3329 4.7853 5.7667 23 7 4.4470 4.1665 5.2707 24 6 5.8446 4.4873 5.5711 25 6 6.1363 5.9315 5.1589 26 6 6.0939 4.3250 7.0720 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6095 1.9800 -0.8449 32 1 1.7472 1.9314 0.9291 33 1 3.1267 1.4436 -0.0843 34 1 1.5931 -1.7140 1.3036 35 1 1.7653 -0.1501 2.1361 36 1 3.4505 -2.2239 -0.3993 37 1 5.0705 -1.6265 0.0333 38 1 5.6162 -5.1806 -0.7613 39 1 3.0272 0.6368 3.4360 40 1 3.0580 1.7814 2.0731 41 1 3.3157 5.6119 6.4616 42 1 6.4989 3.8129 5.0188 43 1 5.9588 6.0472 4.0897 44 1 5.4821 6.6062 5.7110 45 1 7.1763 6.1701 5.3820 46 1 5.8860 3.2961 7.3656 47 1 7.1339 4.5632 7.2953 48 1 5.4395 4.9996 7.6240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745382740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:06 Heat of formation + Delta-G solvation = 32.206928 kcal Electronic energy + Delta-G solvation = -27811.032681 eV Core-core repulsion = 24028.679547 eV Total energy + Delta-G solvation = -3782.353134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.98049 -39.33715 -36.94423 -36.37185 -33.74179 -32.34865 -31.76703 -30.96348 -29.99061 -27.85972 -27.25404 -26.90740 -25.48205 -24.17266 -22.84540 -22.67585 -21.20960 -20.22647 -18.69731 -17.91087 -16.67062 -16.52028 -16.33848 -16.27164 -15.64063 -15.34383 -15.19547 -14.76976 -14.47997 -14.19353 -13.82553 -13.57534 -13.52789 -13.27310 -13.21325 -12.87342 -12.70166 -12.33133 -12.16622 -12.04420 -11.92277 -11.86715 -11.60082 -11.47099 -11.32356 -10.98005 -10.94060 -10.91264 -10.71864 -10.58289 -10.47592 -10.45249 -10.21031 -10.14588 -10.09375 -9.62740 -9.15529 -8.45756 -7.76765 -7.60967 -6.06805 -4.11731 1.00029 1.53095 2.03653 2.38842 2.72830 3.20452 3.28928 3.36779 3.41148 3.83895 4.01565 4.33567 4.34254 4.42863 4.51448 4.83356 4.95757 4.98385 5.00700 5.07094 5.13374 5.14389 5.20607 5.23619 5.27876 5.38940 5.42382 5.46870 5.59466 5.61302 5.70255 5.77380 5.87071 5.88522 6.01284 6.09930 6.19405 6.29739 6.46888 6.57183 6.57915 6.98372 7.39787 7.46920 7.89177 8.19554 8.28125 8.52056 8.78844 8.96653 9.53528 11.01263 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.003174 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.950188 B = 8819.827601 C =10265.187236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.151 4.151 4 C 0.111 3.889 5 N -0.584 5.584 6 C 0.247 3.753 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.527 3.473 16 O -0.531 6.531 17 C -0.148 4.148 18 S 0.069 5.931 19 C 0.149 3.851 20 N -0.299 5.299 21 N -0.289 5.289 22 C 0.154 3.846 23 N -0.460 5.460 24 C 0.126 3.874 25 C -0.162 4.162 26 C -0.162 4.162 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.263 0.737 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.216 0.784 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 20.102 10.400 22.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.208 4.208 4 C -0.014 4.014 5 N -0.315 5.315 6 C 0.128 3.872 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.311 3.689 16 O -0.409 6.409 17 C -0.300 4.300 18 S 0.297 5.703 19 C -0.226 4.226 20 N -0.143 5.143 21 N -0.128 5.128 22 C -0.136 4.136 23 N -0.155 5.155 24 C 0.023 3.977 25 C -0.220 4.220 26 C -0.220 4.220 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.232 0.768 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.125 19.482 9.802 21.912 hybrid contribution -0.032 -0.362 1.053 1.114 sum -2.157 19.120 10.855 22.092 Atomic orbital electron populations 1.21763 0.94855 1.01884 1.01572 1.21538 0.95611 0.96384 0.99914 1.21989 1.01355 0.96130 1.01364 1.21662 0.81252 1.01506 0.96966 1.48098 1.05460 1.27418 1.50529 1.19336 0.94631 0.82233 0.90996 1.21468 1.41201 0.97238 0.96810 0.92319 1.24922 0.95171 0.98731 0.95178 1.69946 1.41969 1.27841 1.13458 0.86448 0.77948 0.82248 0.80835 1.19759 1.20944 1.20865 1.19283 0.87109 0.81758 0.80791 1.90704 1.13919 1.73105 1.63221 1.24150 1.01282 1.01215 1.03334 1.86160 1.04423 1.30734 1.49026 1.27503 0.96153 0.98265 1.00659 1.74694 1.06067 1.15799 1.17766 1.73909 1.25079 1.05240 1.08582 1.26478 0.81498 1.02241 1.03420 1.46820 1.08689 1.25647 1.34337 1.21620 0.78429 0.99152 0.98469 1.22180 1.03285 0.93641 1.02880 1.22185 1.03409 1.03523 0.92913 0.92680 0.92781 0.92406 0.90302 0.92722 0.92576 0.92593 0.89782 0.91178 0.94669 0.93598 0.92740 0.86376 0.85560 0.76772 0.87283 0.91364 0.91536 0.89872 0.91325 0.89865 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 37.16 0.34 -1.32 16 2 C -0.11 -1.63 3.11 -90.62 -0.28 -1.91 16 3 C -0.15 -2.03 7.59 37.16 0.28 -1.75 16 4 C 0.11 1.80 4.89 -4.04 -0.02 1.78 16 5 N -0.58 -12.05 2.26 -175.06 -0.40 -12.45 16 6 C 0.25 6.29 5.22 -5.20 -0.03 6.27 16 7 C -0.53 -14.72 9.39 -34.44 -0.32 -15.04 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 11 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.53 10.75 6.47 -10.98 -0.07 10.68 16 16 O -0.53 -12.88 15.43 5.56 0.09 -12.80 16 17 C -0.15 -2.38 4.07 36.01 0.15 -2.24 16 18 S 0.07 1.04 20.60 -107.50 -2.21 -1.17 16 19 C 0.15 2.09 8.07 -88.35 -0.71 1.37 16 20 N -0.30 -4.71 11.60 30.68 0.36 -4.35 16 21 N -0.29 -4.19 12.17 29.90 0.36 -3.83 16 22 C 0.15 1.60 11.91 -88.96 -1.06 0.54 16 23 N -0.46 -4.91 2.66 -111.05 -0.29 -5.21 16 24 C 0.13 0.93 3.60 -67.93 -0.24 0.68 16 25 C -0.16 -0.85 9.26 37.16 0.34 -0.51 16 26 C -0.16 -0.89 9.26 37.16 0.34 -0.54 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.25 8.01 -51.93 -0.42 0.83 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.71 6.49 -51.93 -0.34 0.37 16 33 H 0.06 0.85 6.87 -51.93 -0.36 0.50 16 34 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 35 H 0.07 1.00 6.10 -51.93 -0.32 0.69 16 36 H 0.04 0.91 7.94 -51.93 -0.41 0.50 16 37 H 0.05 1.32 7.36 -51.93 -0.38 0.94 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 1.82 7.37 -51.91 -0.38 1.44 16 40 H 0.13 1.87 4.80 -51.92 -0.25 1.62 16 41 H 0.22 1.23 8.06 -52.49 -0.42 0.81 16 42 H 0.11 0.88 7.33 -51.93 -0.38 0.50 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.28 7.99 -51.93 -0.41 -0.13 16 45 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.30 7.98 -51.93 -0.41 -0.12 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -34.45 402.02 -9.54 -43.99 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.83 Total: -1.10 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.38 Total: -0.34 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.77 Total: -51.31 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.21 Total: -1.17 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.45 -9.54 -43.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.196 kcal (2) G-P(sol) polarization free energy of solvation -34.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds