Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46962 * 2 1 4 4 C 1.53005 * 109.46763 * 119.99700 * 2 1 3 5 5 N 1.46502 * 109.46764 * 174.10785 * 4 2 1 6 6 C 1.46496 * 120.00326 * 276.68545 * 5 4 2 7 7 C 1.50700 * 109.47514 * 270.00181 * 6 5 4 8 8 H 1.08009 * 119.99474 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00487 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00199 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47303 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47228 * 120.00106 * 11 9 7 14 14 H 1.48504 * 109.46908 * 239.99479 * 11 9 7 15 15 C 1.34780 * 119.99948 * 96.68614 * 5 4 2 16 16 O 1.21273 * 120.00341 * 185.40442 * 15 5 4 17 17 C 1.50701 * 119.99543 * 5.40358 * 15 5 4 18 18 S 1.80999 * 109.46833 * 174.69249 * 17 15 5 19 19 C 1.76208 * 100.00140 * 180.02562 * 18 17 15 20 20 N 1.31281 * 126.48201 * 0.02562 * 19 18 17 21 21 N 1.28525 * 109.85429 * 179.97438 * 20 19 18 22 22 C 1.30294 * 110.07946 * 0.02562 * 21 20 19 23 23 N 1.36531 * 126.48352 * 180.02562 * 19 18 17 24 24 C 1.46505 * 127.14698 * 359.97438 * 23 19 18 25 25 C 1.52997 * 109.47031 * 120.00306 * 24 23 19 26 26 C 1.53003 * 109.47166 * 240.00414 * 24 23 19 27 27 H 1.08997 * 109.47133 * 300.00034 * 1 2 3 28 28 H 1.08997 * 109.46939 * 60.00426 * 1 2 3 29 29 H 1.09006 * 109.47018 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47194 * 239.99457 * 2 1 3 31 31 H 1.09001 * 109.47099 * 304.69975 * 3 2 1 32 32 H 1.08994 * 109.47433 * 64.70662 * 3 2 1 33 33 H 1.09004 * 109.46725 * 184.70589 * 3 2 1 34 34 H 1.09004 * 109.46964 * 54.11405 * 4 2 1 35 35 H 1.08991 * 109.47294 * 294.10840 * 4 2 1 36 36 H 1.09002 * 109.47159 * 30.00521 * 6 5 4 37 37 H 1.09004 * 109.47410 * 150.00213 * 6 5 4 38 38 H 0.97002 * 119.99688 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.47504 * 54.69716 * 17 15 5 40 40 H 1.09000 * 109.47496 * 294.69003 * 17 15 5 41 41 H 1.08000 * 126.33897 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.46722 * 0.02562 * 24 23 19 43 43 H 1.09000 * 109.47306 * 300.00134 * 25 24 23 44 44 H 1.08996 * 109.47308 * 60.00432 * 25 24 23 45 45 H 1.09005 * 109.47345 * 180.02562 * 25 24 23 46 46 H 1.09000 * 109.46886 * 59.99977 * 26 24 23 47 47 H 1.09004 * 109.46686 * 179.97438 * 26 24 23 48 48 H 1.09000 * 109.47035 * 300.00078 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.4981 -0.8452 1.1806 6 6 4.1050 -1.9449 0.4265 7 6 4.2994 -3.1306 1.3360 8 1 4.0004 -3.0711 2.3722 9 6 4.8590 -4.2913 0.8456 10 7 5.2228 -4.3638 -0.4162 11 14 5.0994 -5.7612 1.9729 12 1 4.6114 -5.4257 3.3347 13 1 4.3360 -6.9202 1.4446 14 1 6.5424 -6.1062 2.0356 15 6 4.2812 0.0524 1.8111 16 8 5.4854 0.0083 1.6744 17 6 3.6604 1.1108 2.6859 18 16 4.9666 2.0556 3.5089 19 6 3.9865 3.1873 4.4382 20 7 2.6753 3.2484 4.4611 21 7 2.2959 4.1923 5.2464 22 6 3.3329 4.7853 5.7667 23 7 4.4470 4.1665 5.2707 24 6 5.8446 4.4873 5.5711 25 6 6.1363 5.9315 5.1589 26 6 6.0939 4.3250 7.0720 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6095 1.9800 -0.8449 32 1 1.7472 1.9314 0.9291 33 1 3.1267 1.4436 -0.0843 34 1 1.5931 -1.7140 1.3036 35 1 1.7653 -0.1501 2.1361 36 1 3.4505 -2.2239 -0.3993 37 1 5.0705 -1.6265 0.0333 38 1 5.6162 -5.1806 -0.7613 39 1 3.0272 0.6368 3.4360 40 1 3.0580 1.7814 2.0731 41 1 3.3157 5.6119 6.4616 42 1 6.4989 3.8129 5.0188 43 1 5.9588 6.0472 4.0897 44 1 5.4821 6.6062 5.7110 45 1 7.1763 6.1701 5.3820 46 1 5.8860 3.2961 7.3656 47 1 7.1339 4.5632 7.2953 48 1 5.4395 4.9996 7.6240 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745382740.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 13.582433 kcal Electronic energy + Delta-G solvation = -27811.840300 eV Core-core repulsion = 24028.679547 eV Total energy + Delta-G solvation = -3783.160753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.91722 -40.98270 -37.84937 -37.62256 -35.54325 -34.18985 -32.51118 -32.14738 -31.35608 -29.09318 -28.26011 -27.99178 -26.95930 -25.12432 -24.64957 -23.68939 -22.01240 -21.47347 -20.12979 -18.97125 -18.60715 -18.19232 -17.44195 -17.24438 -16.97039 -16.76896 -16.39339 -16.03762 -15.65636 -15.35868 -14.92298 -14.81058 -14.57673 -14.45432 -14.35516 -13.83052 -13.81004 -13.77565 -13.31801 -13.20878 -13.04335 -12.85648 -12.72234 -12.64067 -12.55626 -12.55138 -12.31401 -12.24935 -12.14307 -11.92450 -11.86925 -11.61885 -11.57522 -11.36772 -11.32593 -11.04079 -10.86525 -10.64920 -9.50705 -8.79642 -8.23252 -6.37825 -0.14325 0.62001 0.82898 1.36826 1.38666 1.50261 1.58578 1.61114 1.75483 2.20743 2.40894 3.06786 3.37015 3.45669 3.69135 3.83563 3.85167 3.89521 3.99172 3.99922 4.13124 4.17037 4.23378 4.39334 4.47567 4.63438 4.68438 4.68755 4.76740 4.76988 4.77602 4.88812 4.97364 5.00124 5.01218 5.04326 5.18893 5.19590 5.21014 5.24946 5.36535 5.47182 5.54942 5.78896 5.81452 6.04034 6.57281 6.71581 7.16014 7.35066 7.54750 8.84223 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011897 B = 0.003174 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.950188 B = 8819.827601 C =10265.187236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 C -0.146 4.146 4 C 0.106 3.894 5 N -0.587 5.587 6 C 0.265 3.735 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.011 3.989 10 N -0.926 5.926 11 Si 0.966 3.034 12 H -0.267 1.267 13 H -0.270 1.270 14 H -0.281 1.281 15 C 0.522 3.478 16 O -0.578 6.578 17 C -0.133 4.133 18 S 0.059 5.941 19 C 0.136 3.864 20 N -0.325 5.325 21 N -0.331 5.331 22 C 0.178 3.822 23 N -0.453 5.453 24 C 0.118 3.882 25 C -0.156 4.156 26 C -0.157 4.157 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.026 0.974 37 H 0.003 0.997 38 H 0.267 0.733 39 H 0.127 0.873 40 H 0.141 0.859 41 H 0.264 0.736 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.049 0.951 47 H 0.104 0.896 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 21.885 12.779 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 C -0.203 4.203 4 C -0.016 4.016 5 N -0.317 5.317 6 C 0.144 3.856 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.791 3.209 12 H -0.192 1.192 13 H -0.195 1.195 14 H -0.207 1.207 15 C 0.309 3.691 16 O -0.459 6.459 17 C -0.284 4.284 18 S 0.286 5.714 19 C -0.241 4.241 20 N -0.169 5.169 21 N -0.170 5.170 22 C -0.112 4.112 23 N -0.147 5.147 24 C 0.016 3.984 25 C -0.214 4.214 26 C -0.215 4.215 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.044 0.956 37 H 0.021 0.979 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.279 0.721 42 H 0.114 0.886 43 H 0.070 0.930 44 H 0.102 0.898 45 H 0.122 0.878 46 H 0.068 0.932 47 H 0.122 0.878 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.118 21.289 12.192 24.731 hybrid contribution 0.306 -0.799 0.346 0.923 sum -2.812 20.490 12.538 24.186 Atomic orbital electron populations 1.21715 0.92218 1.02439 1.02990 1.21482 0.97667 0.96255 0.97619 1.21942 0.99733 0.95837 1.02799 1.21944 0.78392 1.02023 0.99281 1.48039 1.07415 1.26349 1.49918 1.18765 0.92676 0.83174 0.90980 1.21728 1.41482 0.98263 0.96822 0.92731 1.25816 0.94650 1.01718 0.96682 1.70060 1.42504 1.28851 1.15171 0.85386 0.77904 0.78723 0.78922 1.19153 1.19509 1.20662 1.19911 0.86572 0.82117 0.80519 1.90671 1.16024 1.74449 1.64727 1.23903 1.01444 1.00179 1.02886 1.86163 1.04242 1.31373 1.49615 1.27189 0.95835 0.99240 1.01805 1.74595 1.06862 1.16783 1.18682 1.73838 1.26891 1.06232 1.10022 1.27348 0.80295 1.01633 1.01919 1.47105 1.10145 1.24404 1.33077 1.21956 0.76383 1.00277 0.99787 1.22181 1.05056 0.92187 1.01980 1.22188 1.05208 1.02815 0.91279 0.91243 0.91357 0.92340 0.92648 0.90899 0.91373 0.95114 0.90435 0.88645 0.95638 0.97922 0.92375 0.85442 0.84106 0.72083 0.88639 0.93032 0.89782 0.87788 0.93221 0.87774 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 2 C -0.11 -3.11 3.11 -10.79 -0.03 -3.15 16 3 C -0.15 -3.84 7.59 71.98 0.55 -3.29 16 4 C 0.11 3.48 4.89 86.38 0.42 3.90 16 5 N -0.59 -25.24 2.26 -826.15 -1.87 -27.11 16 6 C 0.27 14.28 5.22 85.63 0.45 14.73 16 7 C -0.54 -31.31 9.39 25.60 0.24 -31.07 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 9 C 0.01 0.61 5.46 84.65 0.46 1.07 16 10 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 11 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 C 0.52 22.18 6.47 87.66 0.57 22.74 16 16 O -0.58 -29.54 15.43 -3.01 -0.05 -29.58 16 17 C -0.13 -4.31 4.07 71.24 0.29 -4.02 16 18 S 0.06 1.81 20.60 -56.49 -1.16 0.64 16 19 C 0.14 3.71 8.07 179.55 1.45 5.15 16 20 N -0.32 -9.92 11.60 -56.85 -0.66 -10.58 16 21 N -0.33 -9.03 12.17 -59.32 -0.72 -9.76 16 22 C 0.18 3.20 11.91 179.77 2.14 5.34 16 23 N -0.45 -8.85 2.66 -505.27 -1.34 -10.19 16 24 C 0.12 1.49 3.60 44.99 0.16 1.65 16 25 C -0.16 -1.20 9.26 71.98 0.67 -0.53 16 26 C -0.16 -1.28 9.26 71.98 0.67 -0.61 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.05 1.82 8.01 -2.39 -0.02 1.80 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.62 6.49 -2.39 -0.02 1.61 16 33 H 0.03 0.95 6.87 -2.38 -0.02 0.93 16 34 H 0.08 2.63 8.12 -2.39 -0.02 2.62 16 35 H 0.10 2.63 6.10 -2.39 -0.01 2.62 16 36 H 0.03 1.40 7.94 -2.39 -0.02 1.38 16 37 H 0.00 0.17 7.36 -2.38 -0.02 0.15 16 38 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.13 3.89 7.37 -2.39 -0.02 3.87 16 40 H 0.14 4.12 4.80 -2.40 -0.01 4.11 16 41 H 0.26 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.10 1.48 7.33 -2.39 -0.02 1.46 16 43 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 0.37 7.99 -2.39 -0.02 0.35 16 45 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 46 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 48 H 0.08 0.40 7.98 -2.39 -0.02 0.38 16 Total: -1.00 -78.71 402.02 6.14 -72.57 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.94 Total: 12.96 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 8.69 Total: 9.66 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.31 Total: -113.20 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.05 Total: -29.58 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.16 Total: 0.64 kcal Total: -78.71 6.14 -72.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382740.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.150 kcal (2) G-P(sol) polarization free energy of solvation -78.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds