Wall clock time and date at job start Sat Apr 11 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47059 * 2 1 4 4 C 1.53000 * 109.47292 * 120.00188 * 2 1 3 5 5 N 1.46894 * 109.46951 * 65.52008 * 4 2 1 6 6 C 1.46905 * 111.00043 * 209.27915 * 5 4 2 7 7 C 1.50704 * 109.46640 * 71.68554 * 6 5 4 8 8 H 1.08005 * 120.00149 * 5.02700 * 7 6 5 9 9 C 1.37876 * 119.99989 * 185.02344 * 7 6 5 10 10 N 1.31510 * 119.99766 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00076 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47052 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47203 * 119.99899 * 11 9 7 14 14 H 1.48493 * 109.47228 * 240.00026 * 11 9 7 15 15 C 1.46904 * 110.99744 * 85.33423 * 5 4 2 16 16 N 1.46500 * 109.46804 * 298.13805 * 15 5 4 17 17 N 1.40173 * 126.35465 * 278.31497 * 16 15 5 18 18 C 1.29424 * 108.13163 * 180.02562 * 17 16 15 19 19 C 1.50701 * 125.57624 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.46977 * 89.97922 * 19 18 17 21 21 N 1.37315 * 108.83604 * 359.74061 * 18 17 16 22 22 C 1.46492 * 125.82810 * 180.27291 * 21 18 17 23 23 C 1.52998 * 117.49825 * 198.43660 * 22 21 18 24 24 C 1.52997 * 117.49953 * 129.77873 * 22 21 18 25 25 C 1.34812 * 108.34174 * 0.43085 * 21 18 17 26 26 S 1.71200 * 126.30307 * 179.83973 * 25 21 18 27 27 H 1.09007 * 109.47509 * 64.91927 * 1 2 3 28 28 H 1.08991 * 109.47382 * 184.92003 * 1 2 3 29 29 H 1.09006 * 109.47267 * 304.92116 * 1 2 3 30 30 H 1.08998 * 109.47443 * 240.00235 * 2 1 3 31 31 H 1.09002 * 109.47094 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46873 * 299.99836 * 3 2 1 33 33 H 1.09001 * 109.47138 * 60.00227 * 3 2 1 34 34 H 1.08999 * 109.46910 * 305.51991 * 4 2 1 35 35 H 1.08998 * 109.47217 * 185.52575 * 4 2 1 36 36 H 1.08999 * 109.46882 * 191.68273 * 6 5 4 37 37 H 1.08992 * 109.47031 * 311.69023 * 6 5 4 38 38 H 0.97001 * 120.00032 * 179.97438 * 10 9 7 39 39 H 1.08995 * 109.46969 * 178.14219 * 15 5 4 40 40 H 1.08996 * 109.47215 * 58.13965 * 15 5 4 41 41 H 1.09004 * 109.46687 * 209.97345 * 19 18 17 42 42 H 1.08993 * 109.47640 * 329.97715 * 19 18 17 43 43 H 0.96697 * 114.00011 * 179.97438 * 20 19 18 44 44 H 1.08998 * 115.55311 * 344.10444 * 22 21 18 45 45 H 1.09004 * 117.50330 * 359.97438 * 23 22 21 46 46 H 1.09007 * 117.50168 * 145.02140 * 23 22 21 47 47 H 1.09002 * 117.50148 * 214.97801 * 24 22 21 48 48 H 1.09003 * 117.49809 * 359.97164 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6621 -2.1393 1.1844 6 6 1.4829 -2.6985 2.5310 7 6 0.2210 -2.1448 3.1409 8 1 -0.4292 -1.5116 2.5553 9 6 -0.1037 -2.4465 4.4464 10 7 0.6876 -3.2180 5.1593 11 14 -1.6683 -1.7608 5.2022 12 1 -2.3796 -0.9290 4.1985 13 1 -2.5454 -2.8813 5.6267 14 1 -1.3241 -0.9273 6.3820 15 6 2.6500 -2.9129 0.4204 16 7 2.7014 -2.4149 -0.9564 17 7 1.8203 -2.7488 -1.9942 18 6 2.1900 -2.1104 -3.0575 19 6 1.5147 -2.1827 -4.4029 20 8 0.5062 -1.1736 -4.4844 21 7 3.2943 -1.3515 -2.7575 22 6 4.0132 -0.4781 -3.6883 23 6 5.4357 -0.0607 -3.3098 24 6 4.2942 0.9565 -3.2369 25 6 3.6060 -1.5500 -1.4610 26 16 4.9059 -0.8315 -0.6096 27 1 -0.3634 0.4356 -0.9308 28 1 -0.3634 -1.0238 0.0881 29 1 -0.3634 0.5883 0.8427 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.5982 -0.2677 2.1364 35 1 3.1254 -0.6364 1.3000 36 1 1.4094 -3.7841 2.4667 37 1 2.3361 -2.4282 3.1531 38 1 0.4594 -3.4300 6.0779 39 1 2.3634 -3.9645 0.4159 40 1 3.6314 -2.8058 0.8824 41 1 2.2529 -2.0230 -5.1889 42 1 1.0576 -3.1642 -4.5277 43 1 0.0294 -1.1612 -5.3256 44 1 3.8008 -0.6407 -4.7449 45 1 5.8365 -0.4356 -2.3680 46 1 6.1590 0.0516 -4.1175 47 1 4.2670 1.7377 -3.9967 48 1 3.9438 1.2507 -2.2476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758306768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:11 Heat of formation + Delta-G solvation = 97.901578 kcal Electronic energy + Delta-G solvation = -29755.599631 eV Core-core repulsion = 25976.095231 eV Total energy + Delta-G solvation = -3779.504400 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.96222 -38.21090 -37.47962 -37.09660 -34.27805 -33.55488 -32.38140 -32.11307 -28.59329 -26.98109 -26.54240 -26.45476 -24.70937 -23.12157 -22.72396 -22.22083 -21.19660 -20.74962 -19.64465 -18.35864 -18.01766 -16.94071 -16.51906 -16.36166 -15.68257 -15.40008 -14.98064 -14.90459 -14.73281 -14.55157 -14.15780 -13.70889 -13.38519 -13.28864 -12.73786 -12.52545 -12.28320 -12.16752 -12.06449 -11.79171 -11.63073 -11.58394 -11.41451 -11.21869 -11.01799 -10.86794 -10.79657 -10.76645 -10.67174 -10.66623 -10.26956 -10.16731 -9.92189 -9.89563 -9.62910 -9.29675 -8.46652 -7.62494 -7.47921 -6.91614 -6.04959 -4.06069 1.10786 1.34640 1.39297 2.29413 2.34327 3.30896 3.38602 3.43858 3.54875 3.66181 4.02144 4.22087 4.30183 4.38326 4.40553 4.69867 4.71611 4.77186 4.85230 5.23387 5.30515 5.33951 5.46589 5.55207 5.57058 5.61511 5.65725 5.79989 5.95584 6.08649 6.12416 6.20404 6.30064 6.37910 6.44899 6.47723 6.54644 6.64453 6.74353 6.95678 7.00523 7.01965 7.12237 7.19768 7.27688 7.75756 7.95173 8.07533 8.41641 9.02199 9.58179 11.05508 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003869 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.549639 B = 7235.890734 C = 7646.781249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.085 4.085 3 C -0.146 4.146 4 C 0.051 3.949 5 N -0.540 5.540 6 C 0.200 3.800 7 C -0.502 4.502 8 H 0.067 0.933 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.299 3.701 16 N -0.347 5.347 17 N -0.229 5.229 18 C 0.251 3.749 19 C 0.164 3.836 20 O -0.556 6.556 21 N -0.458 5.458 22 C 0.047 3.953 23 C -0.188 4.188 24 C -0.165 4.165 25 C 0.470 3.530 26 S -0.583 6.583 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.006 0.994 38 H 0.261 0.739 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.393 0.607 44 H 0.143 0.857 45 H 0.165 0.835 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 3.692 -24.001 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.105 4.105 3 C -0.204 4.204 4 C -0.077 4.077 5 N -0.266 5.266 6 C 0.076 3.924 7 C -0.541 4.541 8 H 0.085 0.915 9 C -0.144 4.144 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.090 3.910 16 N -0.139 5.139 17 N -0.051 5.051 18 C -0.029 4.029 19 C 0.083 3.917 20 O -0.362 6.362 21 N -0.157 5.157 22 C -0.056 4.056 23 C -0.227 4.227 24 C -0.203 4.203 25 C 0.109 3.891 26 S -0.452 6.452 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.023 0.977 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.243 0.757 44 H 0.161 0.839 45 H 0.182 0.818 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.664 3.367 -22.420 23.147 hybrid contribution -0.690 0.347 -0.475 0.906 sum 3.974 3.713 -22.895 23.532 Atomic orbital electron populations 1.21659 0.95165 1.02775 0.99226 1.21204 0.96232 0.95038 0.97998 1.21857 1.01525 0.96411 1.00596 1.22362 0.99210 0.88008 0.98093 1.62079 1.42221 1.02353 1.19957 1.19729 0.97307 0.95183 0.80169 1.21116 1.06132 1.30418 0.96399 0.91511 1.24956 0.97122 0.95350 0.97013 1.69958 1.37337 1.36944 1.09459 0.86449 0.83169 0.78783 0.79108 1.19651 1.21055 1.21081 1.22577 0.98528 0.97181 0.72745 1.49866 1.19284 1.34357 1.10434 1.77334 1.12873 1.21529 0.93346 1.24269 0.88429 0.92685 0.97513 1.20241 0.90640 0.93805 0.87031 1.86593 1.51924 1.55123 1.42527 1.45374 1.24250 1.37082 1.09000 1.22005 0.99034 0.93160 0.91393 1.24730 0.89449 1.00606 1.07964 1.23393 1.02398 0.90230 1.04328 1.23651 0.93001 0.87959 0.84520 1.93054 1.23905 1.63363 1.64863 0.95087 0.91192 0.93360 0.93414 0.91980 0.94016 0.92948 0.89813 0.92684 0.95318 0.97653 0.92918 0.87403 0.89225 0.90456 0.89005 0.75740 0.83927 0.81824 0.88374 0.87801 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.14 37.15 0.34 -2.17 16 2 C -0.09 -1.58 2.63 -90.62 -0.24 -1.82 16 3 C -0.15 -2.44 9.19 37.16 0.34 -2.10 16 4 C 0.05 1.07 3.90 -3.83 -0.01 1.05 16 5 N -0.54 -11.54 3.92 -239.99 -0.94 -12.48 16 6 C 0.20 5.03 4.68 -4.97 -0.02 5.01 16 7 C -0.50 -13.79 8.29 -34.44 -0.29 -14.07 16 8 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 11 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.30 5.54 5.94 -63.31 -0.38 5.16 16 16 N -0.35 -5.87 2.46 -64.99 -0.16 -6.03 16 17 N -0.23 -3.55 12.29 32.97 0.41 -3.15 16 18 C 0.25 3.08 7.32 -154.18 -1.13 1.95 16 19 C 0.16 1.13 7.34 36.01 0.26 1.40 16 20 O -0.56 -4.36 13.64 -35.23 -0.48 -4.84 16 21 N -0.46 -5.90 2.99 -107.52 -0.32 -6.22 16 22 C 0.05 0.45 6.64 -67.94 -0.45 0.00 16 23 C -0.19 -1.92 9.66 -26.70 -0.26 -2.18 16 24 C -0.16 -1.69 9.90 -26.70 -0.26 -1.95 16 25 C 0.47 7.53 4.99 -86.73 -0.43 7.09 16 26 S -0.58 -10.27 23.20 -107.50 -2.49 -12.76 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.50 7.64 -51.93 -0.40 1.10 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.88 3.34 -51.93 -0.17 0.70 16 31 H 0.06 1.06 7.91 -51.93 -0.41 0.65 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.94 7.04 -51.93 -0.37 1.58 16 35 H 0.06 1.17 6.02 -51.93 -0.31 0.86 16 36 H 0.03 0.75 7.88 -51.93 -0.41 0.34 16 37 H 0.01 0.15 8.06 -51.93 -0.42 -0.27 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.11 1.88 7.96 -51.93 -0.41 1.47 16 40 H 0.09 1.69 7.32 -51.93 -0.38 1.31 16 41 H 0.08 0.27 7.17 -51.93 -0.37 -0.10 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.39 0.81 9.12 45.56 0.42 1.22 16 44 H 0.14 0.86 7.17 -51.93 -0.37 0.49 16 45 H 0.17 2.22 4.31 -25.86 -0.11 2.11 16 46 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.11 1.50 7.58 -51.93 -0.39 1.11 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -33.91 389.37 -11.65 -45.57 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -6.62 Total: 3.98 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -2.63 Total: -1.12 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.28 Total: -53.37 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.48 Total: -4.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -10.27 SS G_CDS: -2.49 Total: -12.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.91 -11.65 -45.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758306768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.468 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds