Wall clock time and date at job start Sat Apr 11 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47059 * 2 1 4 4 C 1.53000 * 109.47292 * 120.00188 * 2 1 3 5 5 N 1.46894 * 109.46951 * 65.52008 * 4 2 1 6 6 C 1.46905 * 111.00043 * 209.27915 * 5 4 2 7 7 C 1.50704 * 109.46640 * 71.68554 * 6 5 4 8 8 H 1.08005 * 120.00149 * 5.02700 * 7 6 5 9 9 C 1.37876 * 119.99989 * 185.02344 * 7 6 5 10 10 N 1.31510 * 119.99766 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00076 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47052 * 0.02562 * 11 9 7 13 13 H 1.48495 * 109.47203 * 119.99899 * 11 9 7 14 14 H 1.48493 * 109.47228 * 240.00026 * 11 9 7 15 15 C 1.46904 * 110.99744 * 85.33423 * 5 4 2 16 16 N 1.46500 * 109.46804 * 298.13805 * 15 5 4 17 17 N 1.40173 * 126.35465 * 278.31497 * 16 15 5 18 18 C 1.29424 * 108.13163 * 180.02562 * 17 16 15 19 19 C 1.50701 * 125.57624 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.46977 * 89.97922 * 19 18 17 21 21 N 1.37315 * 108.83604 * 359.74061 * 18 17 16 22 22 C 1.46492 * 125.82810 * 180.27291 * 21 18 17 23 23 C 1.52998 * 117.49825 * 198.43660 * 22 21 18 24 24 C 1.52997 * 117.49953 * 129.77873 * 22 21 18 25 25 C 1.34812 * 108.34174 * 0.43085 * 21 18 17 26 26 S 1.71200 * 126.30307 * 179.83973 * 25 21 18 27 27 H 1.09007 * 109.47509 * 64.91927 * 1 2 3 28 28 H 1.08991 * 109.47382 * 184.92003 * 1 2 3 29 29 H 1.09006 * 109.47267 * 304.92116 * 1 2 3 30 30 H 1.08998 * 109.47443 * 240.00235 * 2 1 3 31 31 H 1.09002 * 109.47094 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46873 * 299.99836 * 3 2 1 33 33 H 1.09001 * 109.47138 * 60.00227 * 3 2 1 34 34 H 1.08999 * 109.46910 * 305.51991 * 4 2 1 35 35 H 1.08998 * 109.47217 * 185.52575 * 4 2 1 36 36 H 1.08999 * 109.46882 * 191.68273 * 6 5 4 37 37 H 1.08992 * 109.47031 * 311.69023 * 6 5 4 38 38 H 0.97001 * 120.00032 * 179.97438 * 10 9 7 39 39 H 1.08995 * 109.46969 * 178.14219 * 15 5 4 40 40 H 1.08996 * 109.47215 * 58.13965 * 15 5 4 41 41 H 1.09004 * 109.46687 * 209.97345 * 19 18 17 42 42 H 1.08993 * 109.47640 * 329.97715 * 19 18 17 43 43 H 0.96697 * 114.00011 * 179.97438 * 20 19 18 44 44 H 1.08998 * 115.55311 * 344.10444 * 22 21 18 45 45 H 1.09004 * 117.50330 * 359.97438 * 23 22 21 46 46 H 1.09007 * 117.50168 * 145.02140 * 23 22 21 47 47 H 1.09002 * 117.50148 * 214.97801 * 24 22 21 48 48 H 1.09003 * 117.49809 * 359.97164 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6621 -2.1393 1.1844 6 6 1.4829 -2.6985 2.5310 7 6 0.2210 -2.1448 3.1409 8 1 -0.4292 -1.5116 2.5553 9 6 -0.1037 -2.4465 4.4464 10 7 0.6876 -3.2180 5.1593 11 14 -1.6683 -1.7608 5.2022 12 1 -2.3796 -0.9290 4.1985 13 1 -2.5454 -2.8813 5.6267 14 1 -1.3241 -0.9273 6.3820 15 6 2.6500 -2.9129 0.4204 16 7 2.7014 -2.4149 -0.9564 17 7 1.8203 -2.7488 -1.9942 18 6 2.1900 -2.1104 -3.0575 19 6 1.5147 -2.1827 -4.4029 20 8 0.5062 -1.1736 -4.4844 21 7 3.2943 -1.3515 -2.7575 22 6 4.0132 -0.4781 -3.6883 23 6 5.4357 -0.0607 -3.3098 24 6 4.2942 0.9565 -3.2369 25 6 3.6060 -1.5500 -1.4610 26 16 4.9059 -0.8315 -0.6096 27 1 -0.3634 0.4356 -0.9308 28 1 -0.3634 -1.0238 0.0881 29 1 -0.3634 0.5883 0.8427 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.5982 -0.2677 2.1364 35 1 3.1254 -0.6364 1.3000 36 1 1.4094 -3.7841 2.4667 37 1 2.3361 -2.4282 3.1531 38 1 0.4594 -3.4300 6.0779 39 1 2.3634 -3.9645 0.4159 40 1 3.6314 -2.8058 0.8824 41 1 2.2529 -2.0230 -5.1889 42 1 1.0576 -3.1642 -4.5277 43 1 0.0294 -1.1612 -5.3256 44 1 3.8008 -0.6407 -4.7449 45 1 5.8365 -0.4356 -2.3680 46 1 6.1590 0.0516 -4.1175 47 1 4.2670 1.7377 -3.9967 48 1 3.9438 1.2507 -2.2476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758306768.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:10 Heat of formation + Delta-G solvation = 75.299380 kcal Electronic energy + Delta-G solvation = -29756.579736 eV Core-core repulsion = 25976.095231 eV Total energy + Delta-G solvation = -3780.484505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.09117 -39.57003 -38.37762 -37.90485 -35.81533 -35.15317 -33.95383 -33.36299 -29.93710 -28.58238 -28.04884 -27.71442 -26.23400 -24.65602 -23.61877 -23.13218 -22.70300 -21.99282 -21.20169 -19.37866 -18.73142 -18.45385 -17.98371 -17.66602 -16.98500 -16.67657 -16.41884 -16.04864 -15.94515 -15.58599 -15.39710 -15.20110 -14.90282 -14.43676 -14.29528 -14.00619 -13.56126 -13.51759 -13.26121 -13.17936 -13.08358 -12.92692 -12.81994 -12.68205 -12.60389 -12.52687 -12.39933 -12.10153 -11.98510 -11.80276 -11.60644 -11.48093 -11.43358 -11.24444 -11.17220 -10.79317 -10.62295 -9.36266 -8.81768 -8.30801 -8.20237 -6.30109 -0.14254 0.14321 0.43600 1.03483 1.34625 1.38646 1.39765 1.52723 2.38238 2.74348 2.78958 3.08984 3.11738 3.17722 3.38261 3.77123 3.79463 3.87617 3.92659 3.99429 4.06711 4.10258 4.22702 4.25708 4.30718 4.41754 4.53044 4.69004 4.70612 4.73078 4.83312 4.84647 4.89928 4.95765 5.01857 5.10757 5.14283 5.18560 5.24337 5.38403 5.41470 5.49054 5.61247 5.65233 5.94273 6.00903 6.19707 6.39880 6.83467 6.84048 7.38447 8.89276 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.015119 B = 0.003869 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.549639 B = 7235.890734 C = 7646.781249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.136 4.136 4 C 0.063 3.937 5 N -0.540 5.540 6 C 0.217 3.783 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.008 3.992 10 N -0.931 5.931 11 Si 0.963 3.037 12 H -0.267 1.267 13 H -0.277 1.277 14 H -0.280 1.280 15 C 0.307 3.693 16 N -0.359 5.359 17 N -0.267 5.267 18 C 0.268 3.732 19 C 0.163 3.837 20 O -0.581 6.581 21 N -0.451 5.451 22 C 0.045 3.955 23 C -0.192 4.192 24 C -0.167 4.167 25 C 0.471 3.529 26 S -0.631 6.631 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.016 0.984 37 H -0.024 1.024 38 H 0.265 0.735 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.418 0.582 44 H 0.195 0.805 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.137 0.863 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.757 4.652 -27.858 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.065 4.065 5 N -0.266 5.266 6 C 0.091 3.909 7 C -0.551 4.551 8 H 0.078 0.922 9 C -0.190 4.190 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.206 1.206 15 C 0.097 3.903 16 N -0.150 5.150 17 N -0.089 5.089 18 C -0.012 4.012 19 C 0.083 3.917 20 O -0.392 6.392 21 N -0.148 5.148 22 C -0.056 4.056 23 C -0.231 4.231 24 C -0.205 4.205 25 C 0.107 3.893 26 S -0.501 6.501 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.034 0.966 37 H -0.007 1.007 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.142 0.858 42 H 0.129 0.871 43 H 0.272 0.728 44 H 0.212 0.788 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.155 0.845 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.539 4.343 -26.359 26.948 hybrid contribution -0.299 0.043 0.574 0.649 sum 3.240 4.386 -25.785 26.355 Atomic orbital electron populations 1.21537 0.95242 1.01098 0.99920 1.21143 0.95925 0.95954 0.96777 1.21755 1.01037 0.95130 1.01474 1.22225 0.98356 0.87763 0.98174 1.62012 1.43713 1.02794 1.18060 1.19346 0.95500 0.94265 0.81768 1.21324 1.06678 1.30287 0.96824 0.92164 1.25776 1.00270 0.95553 0.97446 1.70068 1.39099 1.38065 1.09872 0.85422 0.79293 0.78270 0.78189 1.19167 1.20212 1.20556 1.22305 0.97230 0.97153 0.73656 1.49516 1.20219 1.34987 1.10255 1.77357 1.13735 1.23873 0.93919 1.25501 0.87168 0.89960 0.98553 1.20678 0.91751 0.94748 0.84566 1.86509 1.52499 1.55255 1.44920 1.45705 1.24327 1.36785 1.08019 1.22692 0.98146 0.92059 0.92681 1.24533 0.90297 1.00818 1.07476 1.23385 1.02300 0.91275 1.03541 1.23397 0.92313 0.87639 0.85907 1.93148 1.25538 1.64791 1.66662 0.93105 0.93761 0.94026 0.92779 0.92657 0.92019 0.93069 0.92828 0.93621 0.96644 1.00655 0.92654 0.86727 0.90169 0.85767 0.87123 0.72762 0.78844 0.85300 0.85196 0.84548 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 9.14 71.98 0.66 -3.93 16 2 C -0.08 -2.94 2.63 -10.79 -0.03 -2.97 16 3 C -0.14 -4.52 9.19 71.99 0.66 -3.85 16 4 C 0.06 2.76 3.90 86.30 0.34 3.09 16 5 N -0.54 -24.28 3.92 -913.18 -3.58 -27.86 16 6 C 0.22 11.54 4.68 85.56 0.40 11.94 16 7 C -0.51 -29.18 8.29 25.60 0.21 -28.97 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.01 0.45 5.46 84.66 0.46 0.92 16 10 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 11 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 15 C 0.31 11.96 5.94 170.80 1.02 12.98 16 16 N -0.36 -12.28 2.46 -359.54 -0.89 -13.16 16 17 N -0.27 -8.02 12.29 -49.61 -0.61 -8.63 16 18 C 0.27 5.82 7.32 137.70 1.01 6.83 16 19 C 0.16 1.46 7.34 71.24 0.52 1.99 16 20 O -0.58 -6.49 13.64 -148.98 -2.03 -8.52 16 21 N -0.45 -10.59 2.99 -494.08 -1.48 -12.06 16 22 C 0.04 0.70 6.64 44.99 0.30 1.00 16 23 C -0.19 -3.47 9.66 30.62 0.30 -3.18 16 24 C -0.17 -2.96 9.90 30.62 0.30 -2.66 16 25 C 0.47 15.05 4.99 178.99 0.89 15.94 16 26 S -0.63 -23.11 23.20 -56.49 -1.31 -24.42 16 27 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.04 1.90 7.64 -2.39 -0.02 1.88 16 29 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.05 1.98 3.34 -2.39 -0.01 1.97 16 31 H 0.05 1.92 7.91 -2.39 -0.02 1.90 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 2.63 7.04 -2.39 -0.02 2.62 16 35 H 0.05 2.08 6.02 -2.39 -0.01 2.06 16 36 H 0.02 0.86 7.88 -2.39 -0.02 0.84 16 37 H -0.02 -1.42 8.06 -2.39 -0.02 -1.44 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.11 4.23 7.96 -2.39 -0.02 4.21 16 40 H 0.08 3.26 7.32 -2.39 -0.02 3.24 16 41 H 0.12 0.00 7.17 -2.38 -0.02 -0.01 16 42 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.42 -0.28 9.12 -74.06 -0.68 -0.95 16 44 H 0.19 1.03 7.17 -2.39 -0.02 1.01 16 45 H 0.13 3.46 4.31 -18.96 -0.08 3.38 16 46 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.08 1.99 7.58 -2.39 -0.02 1.97 16 Total: -1.00 -78.58 389.37 -0.31 -78.90 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.23 Total: 15.08 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 7.04 Total: 9.13 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -6.27 Total: -117.31 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -2.03 Total: -8.52 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: -23.11 SS G_CDS: -1.31 Total: -24.42 kcal Total: -78.58 -0.31 -78.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758306768.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.195 kcal (2) G-P(sol) polarization free energy of solvation -78.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds