Wall clock time and date at job start Sat Apr 11 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47471 * 2 1 4 4 C 1.53001 * 109.47411 * 239.99785 * 2 1 3 5 5 C 1.53008 * 109.47022 * 294.46059 * 4 2 1 6 6 H 1.09002 * 109.50240 * 186.31032 * 5 4 2 7 7 C 1.53091 * 109.50481 * 306.39610 * 5 4 2 8 8 O 1.43016 * 109.25862 * 176.78553 * 7 5 4 9 9 C 1.43013 * 113.73600 * 301.32989 * 8 7 5 10 10 C 1.53097 * 109.26123 * 58.66828 * 9 8 7 11 11 N 1.47012 * 109.50594 * 66.21998 * 5 4 2 12 12 C 1.46907 * 110.99736 * 57.67633 * 11 5 4 13 13 N 1.46503 * 109.46736 * 164.26982 * 12 11 5 14 14 N 1.40162 * 126.14500 * 269.68647 * 13 12 11 15 15 C 1.32246 * 107.75700 * 179.82848 * 14 13 12 16 16 C 1.40117 * 125.92926 * 180.15740 * 15 14 13 17 17 H 1.07991 * 120.00317 * 180.32598 * 16 15 14 18 18 C 1.40039 * 119.99736 * 0.32592 * 16 15 14 19 19 N 1.30806 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00163 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47476 * 89.99391 * 20 18 16 22 22 H 1.48504 * 109.47111 * 210.00089 * 20 18 16 23 23 H 1.48507 * 109.47049 * 329.99611 * 20 18 16 24 24 N 1.38503 * 108.14689 * 0.43414 * 15 14 13 25 25 C 1.46500 * 125.83748 * 179.72265 * 24 15 14 26 26 C 1.34730 * 108.33028 * 359.72213 * 24 15 14 27 27 S 1.71198 * 125.97601 * 180.02562 * 26 24 15 28 28 H 1.08996 * 109.47271 * 187.02892 * 1 2 3 29 29 H 1.08997 * 109.47156 * 307.03617 * 1 2 3 30 30 H 1.09006 * 109.47129 * 67.03054 * 1 2 3 31 31 H 1.09004 * 109.46782 * 120.00136 * 2 1 3 32 32 H 1.09000 * 109.47405 * 59.99855 * 3 2 1 33 33 H 1.08997 * 109.47484 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47229 * 299.99862 * 3 2 1 35 35 H 1.09003 * 109.46784 * 54.45876 * 4 2 1 36 36 H 1.08995 * 109.47358 * 174.45822 * 4 2 1 37 37 H 1.09004 * 109.51098 * 296.71921 * 7 5 4 38 38 H 1.09001 * 109.50812 * 56.84791 * 7 5 4 39 39 H 1.09005 * 109.50437 * 178.60441 * 9 8 7 40 40 H 1.08998 * 109.50626 * 298.73464 * 9 8 7 41 41 H 1.09006 * 109.50430 * 63.08260 * 10 9 8 42 42 H 1.08997 * 109.50572 * 183.17116 * 10 9 8 43 43 H 1.08997 * 109.46826 * 284.27070 * 12 11 5 44 44 H 1.08993 * 109.47154 * 44.26905 * 12 11 5 45 45 H 0.97002 * 120.00009 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.46682 * 270.02603 * 25 24 15 47 47 H 1.09000 * 109.46516 * 30.02593 * 25 24 15 48 48 H 1.08999 * 109.47214 * 150.02433 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6469 -2.1985 -1.1815 6 1 2.1042 -2.7352 -2.0127 7 6 2.1318 -2.7963 0.1418 8 8 1.6969 -4.1557 0.2328 9 6 0.2773 -4.3121 0.1586 10 6 -0.2265 -3.7296 -1.1646 11 7 0.1842 -2.3214 -1.2629 12 6 -0.3278 -1.7077 -2.4955 13 7 -1.6997 -2.1631 -2.7343 14 7 -2.0792 -3.2916 -3.4739 15 6 -3.3996 -3.3625 -3.4524 16 6 -4.1801 -4.3481 -4.0710 17 1 -5.2568 -4.3103 -3.9958 18 6 -3.5641 -5.3822 -4.7866 19 7 -2.2600 -5.4284 -4.8772 20 14 -4.6046 -6.6958 -5.6119 21 1 -4.9341 -6.2695 -6.9956 22 1 -3.8477 -7.9728 -5.6542 23 1 -5.8595 -6.8896 -4.8417 24 7 -3.8773 -2.2901 -2.7176 25 6 -5.2870 -1.9912 -2.4536 26 6 -2.8240 -1.5686 -2.2872 27 16 -2.9000 -0.1460 -1.3378 28 1 -0.3633 -1.0199 0.1257 29 1 -0.3633 0.6190 0.8203 30 1 -0.3634 0.4011 -0.9462 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.5979 -0.2679 -2.1364 36 1 3.1254 -0.6361 -1.3002 37 1 3.2205 -2.7591 0.1808 38 1 1.7176 -2.2252 0.9727 39 1 0.0247 -5.3713 0.2096 40 1 -0.1909 -3.7851 0.9899 41 1 0.2003 -4.2914 -1.9955 42 1 -1.3138 -3.7957 -1.2008 43 1 -0.3179 -0.6226 -2.3924 44 1 0.3030 -1.9986 -3.3354 45 1 -1.8333 -6.1445 -5.3732 46 1 -5.6764 -1.3491 -3.2437 47 1 -5.8564 -2.9202 -2.4266 48 1 -5.3769 -1.4819 -1.4941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794629060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:30 Heat of formation + Delta-G solvation = 49.319093 kcal Electronic energy + Delta-G solvation = -29930.557100 eV Core-core repulsion = 26148.946005 eV Total energy + Delta-G solvation = -3781.611095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.04031 -39.83473 -36.67652 -35.45227 -34.12688 -33.49015 -31.24119 -30.80701 -28.78446 -26.86998 -26.68978 -26.50067 -26.12459 -23.80699 -22.68818 -21.51228 -20.96196 -20.60168 -18.97589 -17.73572 -16.87278 -16.65240 -15.88475 -15.72785 -15.39631 -15.24114 -14.99469 -14.88869 -14.45142 -14.28547 -13.95679 -13.70871 -13.32021 -13.27515 -12.57372 -12.39446 -12.31497 -12.24010 -11.86693 -11.80416 -11.72799 -11.63082 -11.55219 -11.19100 -11.12586 -10.90603 -10.66714 -10.56060 -10.44337 -10.34413 -10.26978 -10.10941 -10.01764 -9.60111 -9.32023 -9.21866 -8.93829 -7.88128 -7.11218 -6.72043 -6.57314 -5.21649 2.29137 2.54999 2.72853 2.86564 2.90145 3.34464 3.45902 3.59325 3.92895 4.02782 4.15188 4.76755 4.77759 4.99392 5.11848 5.20760 5.24839 5.30485 5.39750 5.47245 5.52554 5.59578 5.64240 5.75941 5.78038 5.81399 5.81970 5.88357 5.98151 6.04680 6.06700 6.17333 6.23420 6.28792 6.36267 6.40290 6.46609 6.50295 6.73916 6.77114 6.94746 7.03454 7.05441 7.10557 7.29722 7.51989 7.58627 7.73427 8.17092 8.28425 9.08436 9.85207 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.004389 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.187922 B = 6377.586854 C = 7716.777689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.109 4.109 5 C 0.053 3.947 6 H 0.050 0.950 7 C 0.069 3.931 8 O -0.389 6.389 9 C 0.067 3.933 10 C 0.026 3.974 11 N -0.524 5.524 12 C 0.324 3.676 13 N -0.386 5.386 14 N -0.346 5.346 15 C 0.375 3.625 16 C -0.437 4.437 17 H 0.097 0.903 18 C 0.077 3.923 19 N -0.737 5.737 20 Si 0.928 3.072 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.259 1.259 24 N -0.518 5.518 25 C 0.101 3.899 26 C 0.475 3.525 27 S -0.691 6.691 28 H 0.094 0.906 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.059 0.941 45 H 0.285 0.715 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.114 1.122 3.861 6.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.147 4.147 5 C -0.056 4.056 6 H 0.068 0.932 7 C -0.008 4.008 8 O -0.307 6.307 9 C -0.010 4.010 10 C -0.102 4.102 11 N -0.252 5.252 12 C 0.113 3.887 13 N -0.172 5.172 14 N -0.178 5.178 15 C 0.126 3.874 16 C -0.478 4.478 17 H 0.115 0.885 18 C -0.150 4.150 19 N -0.361 5.361 20 Si 0.751 3.249 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.183 1.183 24 N -0.219 5.219 25 C -0.042 4.042 26 C 0.107 3.893 27 S -0.566 6.566 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.106 0.894 43 H 0.137 0.863 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.139 1.511 4.396 7.701 hybrid contribution -0.934 -1.202 -1.511 2.145 sum 5.205 0.309 2.885 5.959 Atomic orbital electron populations 1.22303 0.91209 1.04755 1.01850 1.21231 0.98961 0.94559 0.96705 1.21852 0.99669 0.97090 1.01654 1.21717 1.00165 0.93258 0.99564 1.22302 0.87539 0.97135 0.98619 0.93203 1.22782 0.99229 0.82683 0.96108 1.87941 1.22515 1.26104 1.94176 1.22670 0.80698 1.00956 0.96628 1.22675 1.02346 0.87747 0.97424 1.62861 1.10089 1.16130 1.36124 1.22054 0.76838 0.99342 0.90513 1.49123 1.04734 1.22145 1.41205 1.79413 1.08362 1.04273 1.25734 1.21282 0.89285 0.86789 0.90036 1.18369 0.94191 1.05595 1.29657 0.88494 1.25830 0.95425 0.98487 0.95209 1.69868 1.09588 1.28642 1.28003 0.85970 0.80138 0.78918 0.79899 1.19081 1.19782 1.18259 1.45999 1.07223 1.23331 1.45390 1.21747 0.77273 1.02142 1.03086 1.23019 0.83274 0.92738 0.90241 1.92757 1.94629 1.16885 1.52313 0.88753 0.95231 0.91435 0.91927 0.93061 0.93732 0.92918 0.91536 0.91662 0.88900 0.91526 0.88827 0.92586 0.93174 0.89419 0.86271 0.92295 0.90349 0.91564 0.89863 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 6.63 37.15 0.25 -2.09 16 2 C -0.10 -1.23 2.57 -90.63 -0.23 -1.46 16 3 C -0.15 -1.68 9.19 37.15 0.34 -1.34 16 4 C -0.11 -1.34 4.48 -26.73 -0.12 -1.46 16 5 C 0.05 0.74 2.18 -67.60 -0.15 0.60 16 6 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 7 C 0.07 0.91 5.87 37.20 0.22 1.13 16 8 O -0.39 -6.04 10.83 -35.23 -0.38 -6.42 16 9 C 0.07 1.06 7.01 37.21 0.26 1.32 16 10 C 0.03 0.47 4.91 -3.71 -0.02 0.46 16 11 N -0.52 -8.75 1.75 -230.21 -0.40 -9.15 16 12 C 0.32 6.02 4.94 -63.30 -0.31 5.70 16 13 N -0.39 -8.43 2.44 -65.05 -0.16 -8.59 16 14 N -0.35 -8.34 9.68 31.21 0.30 -8.03 16 15 C 0.38 8.82 7.50 -155.27 -1.16 7.65 16 16 C -0.44 -9.80 8.98 -38.20 -0.34 -10.14 16 17 H 0.10 1.96 7.11 -52.49 -0.37 1.59 16 18 C 0.08 1.68 5.50 -17.31 -0.10 1.59 16 19 N -0.74 -17.20 11.90 55.55 0.66 -16.54 16 20 Si 0.93 16.18 29.56 -169.99 -5.02 11.15 16 21 H -0.27 -4.64 7.11 56.52 0.40 -4.23 16 22 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 23 H -0.26 -4.39 7.11 56.52 0.40 -3.99 16 24 N -0.52 -11.22 3.17 -124.65 -0.39 -11.62 16 25 C 0.10 1.73 10.65 59.85 0.64 2.37 16 26 C 0.48 10.70 7.84 -86.92 -0.68 10.02 16 27 S -0.69 -15.82 27.05 -107.50 -2.91 -18.73 16 28 H 0.09 1.73 5.66 -51.93 -0.29 1.43 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.23 4.87 -51.93 -0.25 0.98 16 31 H 0.06 0.77 5.94 -51.93 -0.31 0.46 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.88 6.03 -51.93 -0.31 0.57 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.88 6.55 -51.93 -0.34 1.54 16 43 H 0.12 2.21 4.33 -51.93 -0.22 1.99 16 44 H 0.06 1.10 7.99 -51.93 -0.41 0.68 16 45 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.08 1.26 7.32 -51.93 -0.38 0.88 16 48 H 0.09 1.54 7.61 -51.93 -0.40 1.14 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -27.27 373.61 -11.50 -38.77 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -7.41 Total: 9.20 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: -1.41 Total: 14.34 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: 0.01 Total: -53.93 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.38 Total: -6.42 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.02 Total: 11.15 kcal Atomic # 16 Polarization: -15.82 SS G_CDS: -2.91 Total: -18.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.27 -11.50 -38.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794629060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.090 kcal (2) G-P(sol) polarization free energy of solvation -27.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds