Wall clock time and date at job start Sat Apr 11 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47471 * 2 1 4 4 C 1.53001 * 109.47411 * 239.99785 * 2 1 3 5 5 C 1.53008 * 109.47022 * 294.46059 * 4 2 1 6 6 H 1.09002 * 109.50240 * 186.31032 * 5 4 2 7 7 C 1.53091 * 109.50481 * 306.39610 * 5 4 2 8 8 O 1.43016 * 109.25862 * 176.78553 * 7 5 4 9 9 C 1.43013 * 113.73600 * 301.32989 * 8 7 5 10 10 C 1.53097 * 109.26123 * 58.66828 * 9 8 7 11 11 N 1.47012 * 109.50594 * 66.21998 * 5 4 2 12 12 C 1.46907 * 110.99736 * 57.67633 * 11 5 4 13 13 N 1.46503 * 109.46736 * 164.26982 * 12 11 5 14 14 N 1.40162 * 126.14500 * 269.68647 * 13 12 11 15 15 C 1.32246 * 107.75700 * 179.82848 * 14 13 12 16 16 C 1.40117 * 125.92926 * 180.15740 * 15 14 13 17 17 H 1.07991 * 120.00317 * 180.32598 * 16 15 14 18 18 C 1.40039 * 119.99736 * 0.32592 * 16 15 14 19 19 N 1.30806 * 120.00009 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00163 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47476 * 89.99391 * 20 18 16 22 22 H 1.48504 * 109.47111 * 210.00089 * 20 18 16 23 23 H 1.48507 * 109.47049 * 329.99611 * 20 18 16 24 24 N 1.38503 * 108.14689 * 0.43414 * 15 14 13 25 25 C 1.46500 * 125.83748 * 179.72265 * 24 15 14 26 26 C 1.34730 * 108.33028 * 359.72213 * 24 15 14 27 27 S 1.71198 * 125.97601 * 180.02562 * 26 24 15 28 28 H 1.08996 * 109.47271 * 187.02892 * 1 2 3 29 29 H 1.08997 * 109.47156 * 307.03617 * 1 2 3 30 30 H 1.09006 * 109.47129 * 67.03054 * 1 2 3 31 31 H 1.09004 * 109.46782 * 120.00136 * 2 1 3 32 32 H 1.09000 * 109.47405 * 59.99855 * 3 2 1 33 33 H 1.08997 * 109.47484 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47229 * 299.99862 * 3 2 1 35 35 H 1.09003 * 109.46784 * 54.45876 * 4 2 1 36 36 H 1.08995 * 109.47358 * 174.45822 * 4 2 1 37 37 H 1.09004 * 109.51098 * 296.71921 * 7 5 4 38 38 H 1.09001 * 109.50812 * 56.84791 * 7 5 4 39 39 H 1.09005 * 109.50437 * 178.60441 * 9 8 7 40 40 H 1.08998 * 109.50626 * 298.73464 * 9 8 7 41 41 H 1.09006 * 109.50430 * 63.08260 * 10 9 8 42 42 H 1.08997 * 109.50572 * 183.17116 * 10 9 8 43 43 H 1.08997 * 109.46826 * 284.27070 * 12 11 5 44 44 H 1.08993 * 109.47154 * 44.26905 * 12 11 5 45 45 H 0.97002 * 120.00009 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.46682 * 270.02603 * 25 24 15 47 47 H 1.09000 * 109.46516 * 30.02593 * 25 24 15 48 48 H 1.08999 * 109.47214 * 150.02433 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6469 -2.1985 -1.1815 6 1 2.1042 -2.7352 -2.0127 7 6 2.1318 -2.7963 0.1418 8 8 1.6969 -4.1557 0.2328 9 6 0.2773 -4.3121 0.1586 10 6 -0.2265 -3.7296 -1.1646 11 7 0.1842 -2.3214 -1.2629 12 6 -0.3278 -1.7077 -2.4955 13 7 -1.6997 -2.1631 -2.7343 14 7 -2.0792 -3.2916 -3.4739 15 6 -3.3996 -3.3625 -3.4524 16 6 -4.1801 -4.3481 -4.0710 17 1 -5.2568 -4.3103 -3.9958 18 6 -3.5641 -5.3822 -4.7866 19 7 -2.2600 -5.4284 -4.8772 20 14 -4.6046 -6.6958 -5.6119 21 1 -4.9341 -6.2695 -6.9956 22 1 -3.8477 -7.9728 -5.6542 23 1 -5.8595 -6.8896 -4.8417 24 7 -3.8773 -2.2901 -2.7176 25 6 -5.2870 -1.9912 -2.4536 26 6 -2.8240 -1.5686 -2.2872 27 16 -2.9000 -0.1460 -1.3378 28 1 -0.3633 -1.0199 0.1257 29 1 -0.3633 0.6190 0.8203 30 1 -0.3634 0.4011 -0.9462 31 1 1.8932 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.5979 -0.2679 -2.1364 36 1 3.1254 -0.6361 -1.3002 37 1 3.2205 -2.7591 0.1808 38 1 1.7176 -2.2252 0.9727 39 1 0.0247 -5.3713 0.2096 40 1 -0.1909 -3.7851 0.9899 41 1 0.2003 -4.2914 -1.9955 42 1 -1.3138 -3.7957 -1.2008 43 1 -0.3179 -0.6226 -2.3924 44 1 0.3030 -1.9986 -3.3354 45 1 -1.8333 -6.1445 -5.3732 46 1 -5.6764 -1.3491 -3.2437 47 1 -5.8564 -2.9202 -2.4266 48 1 -5.3769 -1.4819 -1.4941 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794629060.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:30 Heat of formation + Delta-G solvation = 37.415994 kcal Electronic energy + Delta-G solvation = -29931.073257 eV Core-core repulsion = 26148.946005 eV Total energy + Delta-G solvation = -3782.127252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.72001 -41.12838 -37.91541 -36.83684 -35.78730 -34.97913 -32.59230 -32.34930 -30.30819 -28.29847 -28.26290 -27.66791 -27.37709 -25.30310 -23.94880 -23.14739 -22.64913 -21.85100 -20.20747 -19.36759 -18.49707 -17.99827 -17.43556 -17.16418 -16.78451 -16.72683 -16.52056 -16.10501 -15.90918 -15.60225 -15.25120 -15.10101 -14.83497 -14.35533 -13.93914 -13.80960 -13.72578 -13.47463 -13.45364 -13.09169 -12.99470 -12.90832 -12.84209 -12.67093 -12.43907 -12.31760 -12.15153 -12.02330 -11.82515 -11.61782 -11.56426 -11.40364 -11.34138 -11.20256 -10.88485 -10.68724 -10.46798 -9.27828 -8.77740 -8.52164 -8.37961 -6.98435 0.55937 0.85185 1.26309 1.43113 1.58012 1.67854 1.84236 2.10985 2.40798 2.64146 2.85625 3.08005 3.54175 3.71366 3.82060 3.88884 4.04328 4.06708 4.13242 4.16455 4.26386 4.28681 4.42060 4.45599 4.56935 4.59920 4.65764 4.70863 4.73154 4.81766 4.86646 4.87229 4.91602 5.01625 5.05881 5.08606 5.17127 5.27471 5.36799 5.38414 5.52052 5.58921 5.70486 5.76399 5.90949 6.06639 6.13027 6.18727 6.48015 6.55808 7.33041 8.21657 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.013374 B = 0.004389 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.187922 B = 6377.586854 C = 7716.777689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.102 4.102 5 C 0.051 3.949 6 H 0.045 0.955 7 C 0.068 3.932 8 O -0.396 6.396 9 C 0.078 3.922 10 C 0.041 3.959 11 N -0.519 5.519 12 C 0.325 3.675 13 N -0.383 5.383 14 N -0.373 5.373 15 C 0.355 3.645 16 C -0.451 4.451 17 H 0.117 0.883 18 C 0.038 3.962 19 N -0.775 5.775 20 Si 1.003 2.997 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.247 1.247 24 N -0.520 5.520 25 C 0.096 3.904 26 C 0.464 3.536 27 S -0.710 6.710 28 H 0.073 0.927 29 H 0.016 0.984 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.051 0.949 43 H 0.120 0.880 44 H 0.054 0.946 45 H 0.290 0.710 46 H 0.080 0.920 47 H 0.104 0.896 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.689 0.617 4.132 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.108 4.108 3 C -0.199 4.199 4 C -0.140 4.140 5 C -0.057 4.057 6 H 0.063 0.937 7 C -0.008 4.008 8 O -0.315 6.315 9 C 0.000 4.000 10 C -0.088 4.088 11 N -0.246 5.246 12 C 0.115 3.885 13 N -0.169 5.169 14 N -0.205 5.205 15 C 0.106 3.894 16 C -0.493 4.493 17 H 0.135 0.865 18 C -0.185 4.185 19 N -0.400 5.400 20 Si 0.822 3.178 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.170 1.170 24 N -0.221 5.221 25 C -0.045 4.045 26 C 0.094 3.906 27 S -0.586 6.586 28 H 0.091 0.909 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.138 0.862 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.123 0.877 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.717 1.032 4.686 8.255 hybrid contribution -1.086 -1.022 -1.603 2.190 sum 5.631 0.010 3.083 6.420 Atomic orbital electron populations 1.22089 0.94022 1.02736 0.99931 1.21164 0.96201 0.95934 0.97497 1.21802 1.01133 0.95706 1.01222 1.21703 1.02049 0.91449 0.98800 1.22484 0.85386 0.98646 0.99208 0.93749 1.23007 1.01067 0.81470 0.95279 1.87937 1.21830 1.27660 1.94042 1.22560 0.81133 1.01371 0.94897 1.22427 0.99866 0.88452 0.98015 1.62932 1.12161 1.14897 1.34659 1.22132 0.75750 0.99391 0.91232 1.49349 1.05600 1.21430 1.40518 1.79338 1.09315 1.05239 1.26621 1.21650 0.89533 0.87566 0.90601 1.18896 0.95240 1.05572 1.29549 0.86505 1.26829 0.96355 1.00193 0.95121 1.69969 1.11525 1.29667 1.28812 0.84854 0.78584 0.75628 0.78707 1.18757 1.19779 1.16958 1.46270 1.08453 1.22618 1.44730 1.22005 0.75436 1.03581 1.03503 1.23064 0.83856 0.92926 0.90708 1.92681 1.94849 1.17699 1.53358 0.90864 0.96496 0.93713 0.90604 0.93173 0.91326 0.93770 0.92557 0.88381 0.85623 0.91168 0.87885 0.92302 0.95889 0.93091 0.86237 0.92825 0.89904 0.90174 0.87731 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 6.63 71.98 0.48 -3.77 16 2 C -0.09 -2.13 2.57 -10.80 -0.03 -2.16 16 3 C -0.14 -2.96 9.19 71.98 0.66 -2.29 16 4 C -0.10 -2.31 4.48 30.60 0.14 -2.17 16 5 C 0.05 1.38 2.18 44.93 0.10 1.48 16 6 H 0.04 1.27 8.13 -2.39 -0.02 1.25 16 7 C 0.07 1.64 5.87 72.01 0.42 2.06 16 8 O -0.40 -11.75 10.83 -148.98 -1.61 -13.36 16 9 C 0.08 2.43 7.01 72.01 0.50 2.93 16 10 C 0.04 1.55 4.91 86.31 0.42 1.98 16 11 N -0.52 -17.70 1.75 -882.26 -1.55 -19.25 16 12 C 0.33 12.58 4.94 170.80 0.84 13.43 16 13 N -0.38 -17.42 2.44 -359.71 -0.88 -18.29 16 14 N -0.37 -18.63 9.68 -55.16 -0.53 -19.16 16 15 C 0.36 17.03 7.50 133.52 1.00 18.03 16 16 C -0.45 -20.17 8.98 23.16 0.21 -19.96 16 17 H 0.12 4.57 7.11 -2.92 -0.02 4.55 16 18 C 0.04 1.65 5.50 85.28 0.47 2.12 16 19 N -0.77 -36.79 11.90 21.84 0.26 -36.53 16 20 Si 1.00 32.21 29.56 68.60 2.03 34.24 16 21 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 22 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 23 H -0.25 -7.38 7.11 99.48 0.71 -6.67 16 24 N -0.52 -22.87 3.17 -548.29 -1.74 -24.60 16 25 C 0.10 3.27 10.65 127.77 1.36 4.63 16 26 C 0.46 21.51 7.84 179.06 1.40 22.91 16 27 S -0.71 -33.27 27.05 -56.49 -1.53 -34.80 16 28 H 0.07 2.71 5.66 -2.39 -0.01 2.70 16 29 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 1.66 4.87 -2.38 -0.01 1.65 16 31 H 0.08 1.65 5.94 -2.39 -0.01 1.64 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.41 6.40 -2.39 -0.02 1.40 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.13 2.25 8.14 -2.38 -0.02 2.24 16 38 H 0.07 1.68 6.03 -2.39 -0.01 1.66 16 39 H 0.10 2.99 8.14 -2.38 -0.02 2.98 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.05 2.31 6.55 -2.39 -0.02 2.29 16 43 H 0.12 4.62 4.33 -2.39 -0.01 4.61 16 44 H 0.05 2.10 7.99 -2.39 -0.02 2.08 16 45 H 0.29 12.57 8.30 -92.71 -0.77 11.80 16 46 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.10 3.05 7.32 -2.39 -0.02 3.03 16 48 H 0.09 3.05 7.61 -2.39 -0.02 3.03 16 Total: -1.00 -60.80 373.61 3.40 -57.40 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.97 Total: 35.16 kcal Atomic # 6 Polarization: 31.21 SS G_CDS: 7.98 Total: 39.19 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -4.44 Total: -117.84 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: -1.61 Total: -13.36 kcal Atomic # 14 Polarization: 32.21 SS G_CDS: 2.03 Total: 34.24 kcal Atomic # 16 Polarization: -33.27 SS G_CDS: -1.53 Total: -34.80 kcal Total: -60.80 3.40 -57.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794629060.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.817 kcal (2) G-P(sol) polarization free energy of solvation -60.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds