Wall clock time and date at job start Sat Apr 11 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.38501 * 125.83724 * 2 1 4 4 C 1.40125 * 125.92324 * 0.04013 * 3 2 1 5 5 H 1.07994 * 120.00593 * 0.02562 * 4 3 2 6 6 C 1.40043 * 119.99609 * 180.02562 * 4 3 2 7 7 N 1.30797 * 120.00275 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99777 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47322 * 90.00118 * 8 6 4 10 10 H 1.48496 * 109.47186 * 209.99715 * 8 6 4 11 11 H 1.48504 * 109.47313 * 330.00204 * 8 6 4 12 12 N 1.32237 * 108.14913 * 180.02562 * 3 2 1 13 13 N 1.40162 * 107.75650 * 0.02562 * 12 3 2 14 14 C 1.46507 * 126.14526 * 179.97438 * 13 12 3 15 15 N 1.46905 * 109.47108 * 90.01662 * 14 13 12 16 16 C 1.47018 * 110.99643 * 46.36903 * 15 14 13 17 17 C 1.53099 * 109.25222 * 182.38804 * 16 15 14 18 18 O 1.43010 * 109.26246 * 303.15319 * 17 16 15 19 19 C 1.43015 * 113.73980 * 58.66745 * 18 17 16 20 20 H 1.09000 * 109.50314 * 61.27030 * 19 18 17 21 21 C 1.52999 * 109.50332 * 181.35191 * 19 18 17 22 22 C 1.52999 * 109.47192 * 60.00669 * 21 19 18 23 23 C 1.53008 * 109.46793 * 180.02562 * 21 19 18 24 24 C 1.52998 * 109.47697 * 300.00036 * 21 19 18 25 25 C 1.47015 * 110.99622 * 169.99799 * 15 14 13 26 26 C 1.34729 * 125.83476 * 180.30839 * 2 1 3 27 27 S 1.71197 * 125.97169 * 359.97438 * 26 2 1 28 28 H 1.08999 * 109.46993 * 89.99760 * 1 2 3 29 29 H 1.08999 * 109.47372 * 210.00466 * 1 2 3 30 30 H 1.09008 * 109.46786 * 330.00411 * 1 2 3 31 31 H 0.97001 * 120.00063 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46555 * 330.02188 * 14 13 12 33 33 H 1.08994 * 109.46894 * 210.01812 * 14 13 12 34 34 H 1.08998 * 109.50436 * 302.32254 * 16 15 14 35 35 H 1.08995 * 109.50849 * 62.45652 * 16 15 14 36 36 H 1.09002 * 109.50591 * 183.20928 * 17 16 15 37 37 H 1.09006 * 109.50796 * 63.08682 * 17 16 15 38 38 H 1.09000 * 109.47107 * 59.99399 * 22 21 19 39 39 H 1.08997 * 109.47431 * 179.97438 * 22 21 19 40 40 H 1.09003 * 109.46863 * 299.99219 * 22 21 19 41 41 H 1.08997 * 109.47135 * 60.00089 * 23 21 19 42 42 H 1.09000 * 109.47204 * 180.02562 * 23 21 19 43 43 H 1.09008 * 109.47076 * 300.00142 * 23 21 19 44 44 H 1.09003 * 109.46816 * 59.99857 * 24 21 19 45 45 H 1.09000 * 109.47296 * 180.02562 * 24 21 19 46 46 H 1.08997 * 109.46997 * 300.00380 * 24 21 19 47 47 H 1.09003 * 109.50398 * 57.67606 * 25 15 14 48 48 H 1.08999 * 109.54541 * 297.56649 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8373 2.4536 0.0008 5 1 0.7801 2.6739 0.0019 6 6 2.7701 3.4982 0.0002 7 7 4.0506 3.2316 -0.0007 8 14 2.1855 5.2723 0.0019 9 1 2.0325 5.7417 1.4025 10 1 3.1813 6.1223 -0.6989 11 1 0.8780 5.3634 -0.6963 12 7 3.5358 0.7210 -0.0006 13 7 3.5374 -0.6806 -0.0015 14 6 4.7216 -1.5433 -0.0029 15 7 5.1180 -1.8330 1.3816 16 6 3.9536 -2.2142 2.1942 17 6 4.4015 -2.4486 3.6394 18 8 5.4261 -3.4461 3.6599 19 6 6.5754 -3.1071 2.8791 20 1 7.0273 -2.1967 3.2729 21 6 7.5907 -4.2499 2.9418 22 6 6.9564 -5.5268 2.3869 23 6 8.8202 -3.8861 2.1068 24 6 8.0115 -4.4793 4.3948 25 6 6.1496 -2.8795 1.4262 26 6 2.2538 -1.0922 -0.0059 27 16 1.7193 -2.7186 -0.0140 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 4.6967 3.9551 -0.0015 32 1 5.5390 -1.0374 -0.5166 33 1 4.4908 -2.4761 -0.5175 34 1 3.2137 -1.4144 2.1676 35 1 3.5158 -3.1295 1.7959 36 1 3.5523 -2.7867 4.2333 37 1 4.7902 -1.5190 4.0553 38 1 6.6567 -5.3634 1.3517 39 1 7.6798 -6.3409 2.4311 40 1 6.0807 -5.7858 2.9821 41 1 9.2720 -2.9766 2.5024 42 1 9.5434 -4.7004 2.1510 43 1 8.5207 -3.7225 1.0715 44 1 7.1358 -4.7382 4.9900 45 1 8.7352 -5.2931 4.4394 46 1 8.4634 -3.5696 4.7901 47 1 7.0125 -2.5653 0.8390 48 1 5.7475 -3.8056 1.0154 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794644268.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:39 Heat of formation + Delta-G solvation = 37.503458 kcal Electronic energy + Delta-G solvation = -29081.030330 eV Core-core repulsion = 25298.906871 eV Total energy + Delta-G solvation = -3782.123459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.05346 -39.85528 -36.81439 -35.70180 -34.13271 -33.67936 -30.81633 -30.12788 -28.67762 -27.36399 -27.29704 -26.64362 -26.22751 -23.90585 -23.80879 -21.64832 -21.01160 -20.23103 -18.86236 -17.81723 -16.85032 -16.52950 -15.97212 -15.81038 -15.34520 -15.24142 -15.02710 -14.76391 -14.49758 -14.23990 -13.89465 -13.75029 -13.54392 -13.40114 -13.03237 -12.37610 -12.36957 -12.27965 -12.14993 -11.87967 -11.85381 -11.68945 -11.61621 -11.50161 -11.14646 -11.06700 -11.00460 -10.73181 -10.68598 -10.58637 -10.58013 -10.16814 -10.08494 -9.61155 -9.45823 -9.26478 -8.92681 -8.13744 -7.08739 -6.87180 -6.69341 -5.19370 2.20845 2.46103 2.75452 2.88441 2.92396 3.26106 3.47998 3.60950 3.84080 3.96225 4.14225 4.68933 4.76637 4.79869 4.97303 5.13225 5.22016 5.22826 5.36159 5.41069 5.49845 5.54903 5.56566 5.63403 5.64897 5.69064 5.76636 5.77849 5.79090 5.87638 5.88877 6.02296 6.03180 6.03857 6.12974 6.16779 6.22721 6.34983 6.41144 6.44388 6.50556 6.75910 6.92758 7.06909 7.10611 7.38095 7.52964 7.72099 8.17106 8.30025 9.07843 9.89078 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.003455 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.145147 B = 8103.009718 C = 9221.175411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.513 5.513 3 C 0.371 3.629 4 C -0.437 4.437 5 H 0.098 0.902 6 C 0.076 3.924 7 N -0.734 5.734 8 Si 0.929 3.071 9 H -0.266 1.266 10 H -0.273 1.273 11 H -0.259 1.259 12 N -0.330 5.330 13 N -0.375 5.375 14 C 0.327 3.673 15 N -0.544 5.544 16 C 0.016 3.984 17 C 0.069 3.931 18 O -0.378 6.378 19 C 0.109 3.891 20 H 0.064 0.936 21 C -0.059 4.059 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.136 4.136 25 C 0.027 3.973 26 C 0.464 3.536 27 S -0.711 6.711 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.286 0.714 32 H 0.105 0.895 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.084 0.916 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.900 -5.283 4.410 9.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.214 5.214 3 C 0.122 3.878 4 C -0.479 4.479 5 H 0.116 0.884 6 C -0.151 4.151 7 N -0.358 5.358 8 Si 0.752 3.248 9 H -0.190 1.190 10 H -0.198 1.198 11 H -0.183 1.183 12 N -0.161 5.161 13 N -0.161 5.161 14 C 0.116 3.884 15 N -0.272 5.272 16 C -0.112 4.112 17 C -0.008 4.008 18 O -0.296 6.296 19 C 0.050 3.950 20 H 0.081 0.919 21 C -0.060 4.060 22 C -0.197 4.197 23 C -0.201 4.201 24 C -0.193 4.193 25 C -0.102 4.102 26 C 0.095 3.905 27 S -0.587 6.587 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.103 0.897 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.066 -5.618 4.683 10.169 hybrid contribution -1.109 1.154 -0.565 1.697 sum 5.957 -4.464 4.117 8.507 Atomic orbital electron populations 1.21776 0.75305 1.04201 1.03069 1.45994 1.08286 1.04970 1.62166 1.21369 0.84045 0.88533 0.93844 1.18363 0.95458 0.85529 1.48533 0.88445 1.25845 0.94308 1.01999 0.92966 1.69873 1.01603 1.35354 1.28975 0.85957 0.79745 0.79591 0.79537 1.19046 1.19759 1.18288 1.79480 1.13708 0.81888 1.41038 1.49125 1.03143 1.07494 1.56350 1.21794 0.84468 0.92031 0.90129 1.62451 1.11942 1.42064 1.10702 1.23014 0.92427 1.02213 0.93549 1.22629 0.90554 0.91584 0.96013 1.87917 1.27443 1.44427 1.69851 1.22059 0.86491 0.96823 0.89601 0.91852 1.20525 0.94021 0.94864 0.96564 1.21874 1.00808 0.95894 1.01171 1.21927 0.96676 1.01619 0.99873 1.21781 1.01307 1.01135 0.95086 1.22823 0.95545 0.93480 0.98331 1.22941 0.84990 0.92526 0.90089 1.92778 1.85249 0.98821 1.81824 0.91431 0.89181 0.89676 0.90259 0.87712 0.90958 0.90609 0.90582 0.88743 0.93030 0.92496 0.93023 0.91711 0.92367 0.92184 0.92141 0.91771 0.92898 0.92943 0.89731 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.64 59.85 0.64 2.37 16 2 N -0.51 -11.40 3.17 -124.65 -0.39 -11.80 16 3 C 0.37 9.00 7.50 -155.27 -1.16 7.84 16 4 C -0.44 -10.04 8.98 -38.20 -0.34 -10.39 16 5 H 0.10 2.00 7.11 -52.49 -0.37 1.63 16 6 C 0.08 1.69 5.50 -17.32 -0.10 1.59 16 7 N -0.73 -17.62 11.90 55.55 0.66 -16.96 16 8 Si 0.93 16.40 29.56 -169.99 -5.02 11.38 16 9 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 10 H -0.27 -4.79 7.11 56.52 0.40 -4.38 16 11 H -0.26 -4.45 7.11 56.52 0.40 -4.04 16 12 N -0.33 -8.35 10.77 31.21 0.34 -8.01 16 13 N -0.38 -8.58 3.03 -65.05 -0.20 -8.77 16 14 C 0.33 6.34 6.29 -63.30 -0.40 5.94 16 15 N -0.54 -9.79 4.95 -238.21 -1.18 -10.96 16 16 C 0.02 0.31 4.31 -3.71 -0.02 0.29 16 17 C 0.07 1.12 7.01 37.21 0.26 1.38 16 18 O -0.38 -5.81 9.12 -35.23 -0.32 -6.13 16 19 C 0.11 1.48 2.06 -26.68 -0.06 1.42 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.06 -0.65 0.63 -154.51 -0.10 -0.75 16 22 C -0.14 -1.55 7.98 37.16 0.30 -1.25 16 23 C -0.14 -1.34 8.13 37.16 0.30 -1.04 16 24 C -0.14 -1.39 8.33 37.16 0.31 -1.08 16 25 C 0.03 0.39 4.19 -3.71 -0.02 0.37 16 26 C 0.46 10.72 6.12 -86.94 -0.53 10.19 16 27 S -0.71 -16.80 27.28 -107.50 -2.93 -19.74 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.55 7.62 -51.93 -0.40 1.15 16 30 H 0.08 1.30 7.32 -51.92 -0.38 0.92 16 31 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 32 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 33 H 0.07 1.39 7.57 -51.93 -0.39 1.00 16 34 H 0.08 1.68 6.12 -51.93 -0.32 1.36 16 35 H 0.08 1.57 6.64 -51.93 -0.34 1.23 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.65 6.36 -51.93 -0.33 0.32 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.56 6.52 -51.92 -0.34 0.22 16 44 H 0.06 0.73 7.68 -51.93 -0.40 0.33 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.08 1.08 6.62 -51.93 -0.34 0.74 16 48 H 0.05 0.77 6.27 -51.93 -0.33 0.44 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -29.06 382.02 -11.91 -40.97 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.70 Total: 7.36 kcal Atomic # 6 Polarization: 17.81 SS G_CDS: -0.91 Total: 16.90 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.77 Total: -56.50 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.32 Total: -6.13 kcal Atomic # 14 Polarization: 16.40 SS G_CDS: -5.02 Total: 11.38 kcal Atomic # 16 Polarization: -16.80 SS G_CDS: -2.93 Total: -19.74 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.06 -11.91 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794644268.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.475 kcal (2) G-P(sol) polarization free energy of solvation -29.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds