Wall clock time and date at job start Sat Apr 11 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47511 * 2 1 4 4 H 1.09003 * 109.51075 * 305.08651 * 3 2 1 5 5 C 1.53097 * 109.51146 * 184.99683 * 3 2 1 6 6 N 1.47016 * 109.25994 * 183.17281 * 5 3 2 7 7 C 1.46900 * 111.00196 * 182.39240 * 6 5 3 8 8 N 1.46494 * 109.47206 * 170.00198 * 7 6 5 9 9 N 1.40158 * 126.14753 * 89.97740 * 8 7 6 10 10 C 1.32244 * 107.76252 * 179.97438 * 9 8 7 11 11 C 1.40111 * 125.92981 * 179.73324 * 10 9 8 12 12 H 1.07997 * 120.00196 * 180.02562 * 11 10 9 13 13 C 1.40037 * 120.00116 * 0.02823 * 11 10 9 14 14 N 1.30799 * 119.99867 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00416 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47138 * 89.99455 * 15 13 11 17 17 H 1.48495 * 109.47160 * 209.99862 * 15 13 11 18 18 H 1.48499 * 109.46866 * 329.99684 * 15 13 11 19 19 N 1.38501 * 108.14243 * 0.02562 * 10 9 8 20 20 C 1.46504 * 125.83194 * 179.97438 * 19 10 9 21 21 C 1.34730 * 108.33434 * 0.02562 * 19 10 9 22 22 S 1.71190 * 125.97420 * 180.02562 * 21 19 10 23 23 C 1.47009 * 110.75290 * 58.61722 * 6 5 3 24 24 C 1.53105 * 109.26136 * 301.38476 * 23 6 5 25 25 H 1.08995 * 109.51085 * 176.77972 * 24 23 6 26 26 C 1.52995 * 109.53954 * 296.89277 * 24 23 6 27 27 C 1.52997 * 109.47310 * 184.79943 * 26 24 23 28 28 O 1.43018 * 109.25497 * 56.84498 * 24 23 6 29 29 H 1.09008 * 109.47203 * 59.99914 * 1 2 3 30 30 H 1.08996 * 109.47673 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47550 * 300.00169 * 1 2 3 32 32 H 1.08998 * 109.47550 * 239.99831 * 2 1 3 33 33 H 1.09008 * 109.47203 * 120.00086 * 2 1 3 34 34 H 1.08997 * 109.50299 * 63.24127 * 5 3 2 35 35 H 1.09004 * 109.50669 * 303.10836 * 5 3 2 36 36 H 1.09001 * 109.46971 * 49.99960 * 7 6 5 37 37 H 1.09001 * 109.47299 * 290.00545 * 7 6 5 38 38 H 0.97004 * 120.00152 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.46699 * 90.00344 * 20 19 10 40 40 H 1.09001 * 109.46678 * 210.00026 * 20 19 10 41 41 H 1.08995 * 109.47199 * 330.00076 * 20 19 10 42 42 H 1.08999 * 109.51039 * 61.31700 * 23 6 5 43 43 H 1.08994 * 109.51011 * 181.44994 * 23 6 5 44 44 H 1.09005 * 109.47421 * 304.80191 * 26 24 23 45 45 H 1.09000 * 109.47419 * 64.79910 * 26 24 23 46 46 H 1.08999 * 109.47642 * 179.97438 * 27 26 24 47 47 H 1.08996 * 109.47113 * 300.00198 * 27 26 24 48 48 H 1.08999 * 109.46784 * 60.00195 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9825 -0.8407 5 6 3.5658 1.4452 -0.1257 6 7 4.0562 2.8290 -0.0487 7 6 5.5140 2.8814 -0.2222 8 7 5.9373 4.2751 -0.3787 9 7 6.3062 5.1481 0.6539 10 6 6.6215 6.3099 0.1067 11 6 7.0394 7.4565 0.7950 12 1 7.2733 8.3587 0.2494 13 6 7.1537 7.4327 2.1905 14 7 6.8700 6.3402 2.8514 15 14 7.7101 8.9616 3.1083 16 1 6.5255 9.7818 3.4677 17 1 8.4293 8.5624 4.3446 18 1 8.6179 9.7559 2.2422 19 7 6.4606 6.1986 -1.2645 20 6 6.7038 7.2593 -2.2454 21 6 6.0413 4.9487 -1.5419 22 16 5.7023 4.3242 -3.0994 23 6 3.6538 3.4545 1.2194 24 6 2.1271 3.4316 1.3318 25 1 1.8268 3.8424 2.2956 26 6 1.5186 4.2710 0.2067 27 6 0.0014 4.3458 0.3895 28 8 1.6664 2.0820 1.2234 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8529 1.0101 -1.0829 35 1 3.9989 0.8599 0.6855 36 1 5.7948 2.3145 -1.1098 37 1 5.9998 2.4502 0.6531 38 1 6.9488 6.3238 3.8181 39 1 7.7408 7.2154 -2.5784 40 1 6.0415 7.1222 -3.1003 41 1 6.5099 8.2291 -1.7874 42 1 4.0883 2.9013 2.0521 43 1 4.0051 4.4859 1.2442 44 1 1.9381 5.2766 0.2359 45 1 1.7464 3.8102 -0.7545 46 1 -0.4321 4.9442 -0.4118 47 1 -0.4181 3.3402 0.3602 48 1 -0.2264 4.8067 1.3506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817365614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:58 Heat of formation + Delta-G solvation = 29.362294 kcal Electronic energy + Delta-G solvation = -29268.518399 eV Core-core repulsion = 25486.041912 eV Total energy + Delta-G solvation = -3782.476486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92038 -39.87798 -36.16738 -34.59724 -34.16845 -33.66289 -32.34076 -30.79566 -29.30450 -28.51067 -26.62073 -26.43262 -24.17412 -23.95851 -22.30875 -21.90408 -21.02459 -20.83450 -19.18450 -17.79910 -16.86171 -16.44754 -16.32760 -15.73666 -15.38196 -15.14230 -14.97883 -14.64121 -14.42894 -14.19475 -13.92323 -13.72444 -13.51260 -13.36206 -12.96106 -12.56686 -12.34587 -12.25233 -11.87021 -11.85347 -11.81399 -11.70189 -11.57120 -11.45325 -11.13785 -11.06268 -10.86123 -10.83141 -10.64686 -10.56659 -10.52914 -10.21137 -9.98505 -9.59735 -9.34437 -9.24251 -8.91712 -8.12065 -7.10263 -6.76241 -6.66313 -5.19298 2.31079 2.58662 2.74042 2.87665 2.91232 3.35661 3.48109 3.60853 3.85468 3.98808 4.22149 4.78227 4.79606 4.94032 5.05530 5.14758 5.17922 5.22272 5.30981 5.35067 5.43307 5.51969 5.57282 5.59193 5.71281 5.77713 5.82531 5.83857 5.86587 5.89368 5.94189 5.99159 6.07955 6.18001 6.19647 6.22773 6.27110 6.33479 6.41094 6.53902 6.60792 6.75697 6.97474 7.08378 7.10892 7.40449 7.57381 7.74874 8.19459 8.30646 9.11162 9.87048 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.003974 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.711810 B = 7043.264455 C = 8202.994383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.093 3.907 4 H 0.071 0.929 5 C 0.032 3.968 6 N -0.539 5.539 7 C 0.329 3.671 8 N -0.378 5.378 9 N -0.345 5.345 10 C 0.376 3.624 11 C -0.437 4.437 12 H 0.097 0.903 13 C 0.077 3.923 14 N -0.738 5.738 15 Si 0.927 3.073 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.259 1.259 19 N -0.517 5.517 20 C 0.101 3.899 21 C 0.481 3.519 22 S -0.706 6.706 23 C 0.027 3.973 24 C 0.098 3.902 25 H 0.101 0.899 26 C -0.144 4.144 27 C -0.145 4.145 28 O -0.375 6.375 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.285 0.715 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.040 0.960 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 -4.251 1.393 8.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.035 3.965 4 H 0.089 0.911 5 C -0.096 4.096 6 N -0.265 5.265 7 C 0.117 3.883 8 N -0.164 5.164 9 N -0.177 5.177 10 C 0.127 3.873 11 C -0.478 4.478 12 H 0.115 0.885 13 C -0.149 4.149 14 N -0.362 5.362 15 Si 0.751 3.249 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.183 1.183 19 N -0.219 5.219 20 C -0.043 4.043 21 C 0.113 3.887 22 S -0.582 6.582 23 C -0.101 4.101 24 C 0.041 3.959 25 H 0.118 0.882 26 C -0.182 4.182 27 C -0.203 4.203 28 O -0.294 6.294 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.128 0.872 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.119 0.881 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.729 -5.176 1.370 9.403 hybrid contribution 1.170 1.205 1.076 1.995 sum -6.559 -3.971 2.446 8.048 Atomic orbital electron populations 1.21684 0.95217 1.01194 1.02325 1.21505 0.96735 0.94391 1.02564 1.22149 0.92417 0.93663 0.88287 0.91127 1.22677 0.96319 0.88630 1.02012 1.61998 1.12224 1.17395 1.34918 1.21653 0.86625 0.77764 1.02278 1.49075 1.51753 1.11686 1.03873 1.79338 1.36447 0.98398 1.03505 1.21262 0.93691 0.95025 0.77334 1.18362 1.42714 0.95135 0.91630 0.88501 1.25824 0.93602 0.98140 0.97350 1.69866 1.30056 1.26655 1.09629 0.85972 0.79634 0.80316 0.79015 1.19051 1.19804 1.18278 1.45976 1.57018 1.10296 1.08569 1.21748 1.02386 0.88470 0.91652 1.22866 0.88423 0.84606 0.92852 1.92709 1.78725 1.79218 1.07552 1.22824 0.95446 1.02306 0.89484 1.22282 0.92205 0.82280 0.99168 0.88174 1.21968 0.95353 1.00696 1.00184 1.21706 0.96054 1.01549 1.00960 1.87973 1.77003 1.26010 1.38412 0.92883 0.93010 0.91994 0.90590 0.91362 0.89385 0.94081 0.87174 0.91823 0.90373 0.91554 0.89195 0.89833 0.94149 0.88123 0.91457 0.90300 0.93174 0.92532 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.81 37.15 0.36 -1.08 16 2 C -0.11 -1.20 5.64 -26.74 -0.15 -1.35 16 3 C 0.09 1.22 2.41 -26.68 -0.06 1.16 16 4 H 0.07 1.01 6.39 -51.93 -0.33 0.68 16 5 C 0.03 0.46 4.93 -3.71 -0.02 0.44 16 6 N -0.54 -9.33 4.33 -238.22 -1.03 -10.36 16 7 C 0.33 6.25 5.91 -63.32 -0.37 5.88 16 8 N -0.38 -8.52 3.35 -65.06 -0.22 -8.74 16 9 N -0.35 -8.44 9.74 31.21 0.30 -8.14 16 10 C 0.38 9.00 7.50 -155.27 -1.16 7.84 16 11 C -0.44 -9.91 8.98 -38.21 -0.34 -10.26 16 12 H 0.10 1.98 7.11 -52.49 -0.37 1.61 16 13 C 0.08 1.69 5.50 -17.32 -0.10 1.60 16 14 N -0.74 -17.22 11.90 55.55 0.66 -16.56 16 15 Si 0.93 16.24 29.56 -169.99 -5.03 11.21 16 16 H -0.27 -4.63 7.11 56.52 0.40 -4.22 16 17 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 18 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16 19 N -0.52 -11.55 3.17 -124.66 -0.39 -11.94 16 20 C 0.10 1.78 10.65 59.85 0.64 2.42 16 21 C 0.48 11.29 7.84 -86.92 -0.68 10.61 16 22 S -0.71 -17.22 29.49 -107.50 -3.17 -20.39 16 23 C 0.03 0.48 4.95 -3.71 -0.02 0.46 16 24 C 0.10 1.50 3.30 -26.68 -0.09 1.42 16 25 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 26 C -0.14 -2.20 5.04 -26.74 -0.13 -2.34 16 27 C -0.15 -1.86 9.81 37.16 0.36 -1.49 16 28 O -0.37 -5.46 9.37 -35.23 -0.33 -5.79 16 29 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.11 2.07 7.54 -51.93 -0.39 1.67 16 37 H 0.06 1.18 8.12 -51.93 -0.42 0.75 16 38 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.09 1.59 7.61 -51.93 -0.40 1.19 16 41 H 0.08 1.30 7.31 -51.93 -0.38 0.92 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 2.14 6.73 -51.93 -0.35 1.79 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.08 1.33 6.02 -51.93 -0.31 1.02 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -28.56 392.93 -13.02 -41.58 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.97 Total: 7.91 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: -1.77 Total: 15.30 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: -0.68 Total: -55.74 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.33 Total: -5.79 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.21 kcal Atomic # 16 Polarization: -17.22 SS G_CDS: -3.17 Total: -20.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.56 -13.02 -41.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817365614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.946 kcal (2) G-P(sol) polarization free energy of solvation -28.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds