Wall clock time and date at job start Sat Apr 11 2020 06:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47511 * 2 1 4 4 H 1.09003 * 109.51075 * 305.08651 * 3 2 1 5 5 C 1.53097 * 109.51146 * 184.99683 * 3 2 1 6 6 N 1.47016 * 109.25994 * 183.17281 * 5 3 2 7 7 C 1.46900 * 111.00196 * 182.39240 * 6 5 3 8 8 N 1.46494 * 109.47206 * 170.00198 * 7 6 5 9 9 N 1.40158 * 126.14753 * 89.97740 * 8 7 6 10 10 C 1.32244 * 107.76252 * 179.97438 * 9 8 7 11 11 C 1.40111 * 125.92981 * 179.73324 * 10 9 8 12 12 H 1.07997 * 120.00196 * 180.02562 * 11 10 9 13 13 C 1.40037 * 120.00116 * 0.02823 * 11 10 9 14 14 N 1.30799 * 119.99867 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00416 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47138 * 89.99455 * 15 13 11 17 17 H 1.48495 * 109.47160 * 209.99862 * 15 13 11 18 18 H 1.48499 * 109.46866 * 329.99684 * 15 13 11 19 19 N 1.38501 * 108.14243 * 0.02562 * 10 9 8 20 20 C 1.46504 * 125.83194 * 179.97438 * 19 10 9 21 21 C 1.34730 * 108.33434 * 0.02562 * 19 10 9 22 22 S 1.71190 * 125.97420 * 180.02562 * 21 19 10 23 23 C 1.47009 * 110.75290 * 58.61722 * 6 5 3 24 24 C 1.53105 * 109.26136 * 301.38476 * 23 6 5 25 25 H 1.08995 * 109.51085 * 176.77972 * 24 23 6 26 26 C 1.52995 * 109.53954 * 296.89277 * 24 23 6 27 27 C 1.52997 * 109.47310 * 184.79943 * 26 24 23 28 28 O 1.43018 * 109.25497 * 56.84498 * 24 23 6 29 29 H 1.09008 * 109.47203 * 59.99914 * 1 2 3 30 30 H 1.08996 * 109.47673 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47550 * 300.00169 * 1 2 3 32 32 H 1.08998 * 109.47550 * 239.99831 * 2 1 3 33 33 H 1.09008 * 109.47203 * 120.00086 * 2 1 3 34 34 H 1.08997 * 109.50299 * 63.24127 * 5 3 2 35 35 H 1.09004 * 109.50669 * 303.10836 * 5 3 2 36 36 H 1.09001 * 109.46971 * 49.99960 * 7 6 5 37 37 H 1.09001 * 109.47299 * 290.00545 * 7 6 5 38 38 H 0.97004 * 120.00152 * 180.02562 * 14 13 11 39 39 H 1.09003 * 109.46699 * 90.00344 * 20 19 10 40 40 H 1.09001 * 109.46678 * 210.00026 * 20 19 10 41 41 H 1.08995 * 109.47199 * 330.00076 * 20 19 10 42 42 H 1.08999 * 109.51039 * 61.31700 * 23 6 5 43 43 H 1.08994 * 109.51011 * 181.44994 * 23 6 5 44 44 H 1.09005 * 109.47421 * 304.80191 * 26 24 23 45 45 H 1.09000 * 109.47419 * 64.79910 * 26 24 23 46 46 H 1.08999 * 109.47642 * 179.97438 * 27 26 24 47 47 H 1.08996 * 109.47113 * 300.00198 * 27 26 24 48 48 H 1.08999 * 109.46784 * 60.00195 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6046 1.9825 -0.8407 5 6 3.5658 1.4452 -0.1257 6 7 4.0562 2.8290 -0.0487 7 6 5.5140 2.8814 -0.2222 8 7 5.9373 4.2751 -0.3787 9 7 6.3062 5.1481 0.6539 10 6 6.6215 6.3099 0.1067 11 6 7.0394 7.4565 0.7950 12 1 7.2733 8.3587 0.2494 13 6 7.1537 7.4327 2.1905 14 7 6.8700 6.3402 2.8514 15 14 7.7101 8.9616 3.1083 16 1 6.5255 9.7818 3.4677 17 1 8.4293 8.5624 4.3446 18 1 8.6179 9.7559 2.2422 19 7 6.4606 6.1986 -1.2645 20 6 6.7038 7.2593 -2.2454 21 6 6.0413 4.9487 -1.5419 22 16 5.7023 4.3242 -3.0994 23 6 3.6538 3.4545 1.2194 24 6 2.1271 3.4316 1.3318 25 1 1.8268 3.8424 2.2956 26 6 1.5186 4.2710 0.2067 27 6 0.0014 4.3458 0.3895 28 8 1.6664 2.0820 1.2234 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8529 1.0101 -1.0829 35 1 3.9989 0.8599 0.6855 36 1 5.7948 2.3145 -1.1098 37 1 5.9998 2.4502 0.6531 38 1 6.9488 6.3238 3.8181 39 1 7.7408 7.2154 -2.5784 40 1 6.0415 7.1222 -3.1003 41 1 6.5099 8.2291 -1.7874 42 1 4.0883 2.9013 2.0521 43 1 4.0051 4.4859 1.2442 44 1 1.9381 5.2766 0.2359 45 1 1.7464 3.8102 -0.7545 46 1 -0.4321 4.9442 -0.4118 47 1 -0.4181 3.3402 0.3602 48 1 -0.2264 4.8067 1.3506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817365614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:57 Heat of formation + Delta-G solvation = 15.551354 kcal Electronic energy + Delta-G solvation = -29269.117286 eV Core-core repulsion = 25486.041912 eV Total energy + Delta-G solvation = -3783.075374 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.65715 -41.14620 -37.60980 -35.84712 -35.65862 -35.26251 -33.43084 -32.50963 -30.44327 -30.04905 -28.29099 -27.84153 -25.60596 -25.15393 -23.64813 -23.26503 -22.66447 -22.21816 -20.40320 -19.49432 -18.48694 -17.86196 -17.58947 -17.43113 -16.86674 -16.63816 -16.50890 -15.97444 -15.82697 -15.56954 -15.20321 -14.95986 -14.77277 -14.52909 -14.03191 -13.85896 -13.80925 -13.67410 -13.46156 -13.19202 -13.04271 -12.91026 -12.77065 -12.71531 -12.66315 -12.43118 -12.05723 -12.00616 -11.94924 -11.92794 -11.79520 -11.71165 -11.40049 -11.23183 -10.90797 -10.69732 -10.54610 -9.51741 -8.81608 -8.64383 -8.55178 -6.98049 0.52814 0.82270 1.26890 1.43999 1.58892 1.64784 1.84582 2.11577 2.39556 2.65679 2.78143 3.08431 3.51705 3.69158 3.74150 3.90264 3.92671 4.06447 4.10555 4.15138 4.19540 4.29467 4.41185 4.43529 4.44918 4.50102 4.56527 4.62578 4.67126 4.70079 4.77449 4.83465 4.89567 4.93129 4.99715 5.07368 5.08487 5.12782 5.21212 5.26840 5.28395 5.37849 5.48947 5.62778 5.65696 5.93082 6.08934 6.21852 6.47448 6.56159 7.32228 8.22578 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012000 B = 0.003974 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.711810 B = 7043.264455 C = 8202.994383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.094 3.906 4 H 0.061 0.939 5 C 0.031 3.969 6 N -0.545 5.545 7 C 0.326 3.674 8 N -0.374 5.374 9 N -0.369 5.369 10 C 0.355 3.645 11 C -0.451 4.451 12 H 0.117 0.883 13 C 0.038 3.962 14 N -0.774 5.774 15 Si 1.003 2.997 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.248 1.248 19 N -0.518 5.518 20 C 0.095 3.905 21 C 0.469 3.531 22 S -0.735 6.735 23 C 0.039 3.961 24 C 0.106 3.894 25 H 0.110 0.890 26 C -0.136 4.136 27 C -0.137 4.137 28 O -0.374 6.374 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.291 0.709 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.032 0.968 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 -3.871 1.972 8.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.036 3.964 4 H 0.079 0.921 5 C -0.096 4.096 6 N -0.271 5.271 7 C 0.115 3.885 8 N -0.159 5.159 9 N -0.202 5.202 10 C 0.106 3.894 11 C -0.492 4.492 12 H 0.135 0.865 13 C -0.185 4.185 14 N -0.398 5.398 15 Si 0.823 3.177 16 H -0.187 1.187 17 H -0.197 1.197 18 H -0.171 1.171 19 N -0.219 5.219 20 C -0.046 4.046 21 C 0.098 3.902 22 S -0.612 6.612 23 C -0.089 4.089 24 C 0.048 3.952 25 H 0.127 0.873 26 C -0.173 4.173 27 C -0.194 4.194 28 O -0.293 6.293 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.124 0.876 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.260 -4.812 1.926 9.752 hybrid contribution 1.347 1.057 0.921 1.944 sum -6.913 -3.755 2.847 8.366 Atomic orbital electron populations 1.21661 0.94485 1.02222 1.01779 1.21525 0.97304 0.92253 1.03585 1.22283 0.91538 0.95219 0.87369 0.92115 1.22831 0.97067 0.86800 1.02919 1.61994 1.10957 1.19508 1.34682 1.21791 0.87904 0.76413 1.02383 1.49373 1.50899 1.12385 1.03293 1.79281 1.37217 0.99246 1.04430 1.21661 0.94175 0.95479 0.78057 1.18900 1.42413 0.95413 0.92488 0.86486 1.26828 0.92895 1.01071 0.97729 1.69959 1.30650 1.28935 1.10290 0.84849 0.79227 0.76182 0.77490 1.18651 1.19725 1.17068 1.46249 1.56284 1.10572 1.08794 1.22021 1.03280 0.88316 0.90984 1.22839 0.89344 0.85351 0.92662 1.92624 1.80241 1.79822 1.08500 1.22628 0.97100 0.99861 0.89347 1.22187 0.90381 0.83025 0.99635 0.87266 1.21845 0.97221 0.99048 0.99225 1.21636 0.93777 1.02186 1.01795 1.87985 1.76758 1.25349 1.39167 0.92883 0.91226 0.93071 0.88857 0.91025 0.88334 0.93207 0.86968 0.91643 0.89820 0.90032 0.89367 0.87575 0.94987 0.91964 0.93736 0.92043 0.92448 0.91916 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.81 71.98 0.71 -1.81 16 2 C -0.11 -2.07 5.64 30.59 0.17 -1.89 16 3 C 0.09 2.38 2.41 30.63 0.07 2.45 16 4 H 0.06 1.69 6.39 -2.39 -0.02 1.68 16 5 C 0.03 0.87 4.93 86.31 0.43 1.30 16 6 N -0.54 -19.29 4.33 -907.58 -3.93 -23.21 16 7 C 0.33 12.76 5.91 170.81 1.01 13.77 16 8 N -0.37 -17.35 3.35 -359.73 -1.20 -18.55 16 9 N -0.37 -18.56 9.74 -55.17 -0.54 -19.10 16 10 C 0.35 17.18 7.50 133.52 1.00 18.18 16 11 C -0.45 -20.23 8.98 23.16 0.21 -20.02 16 12 H 0.12 4.60 7.11 -2.91 -0.02 4.58 16 13 C 0.04 1.64 5.50 85.28 0.47 2.11 16 14 N -0.77 -36.44 11.90 21.84 0.26 -36.18 16 15 Si 1.00 32.08 29.56 68.60 2.03 34.11 16 16 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 17 H -0.27 -8.62 7.11 99.48 0.71 -7.91 16 18 H -0.25 -7.42 7.11 99.48 0.71 -6.71 16 19 N -0.52 -23.32 3.17 -548.30 -1.74 -25.05 16 20 C 0.10 3.32 10.65 127.77 1.36 4.68 16 21 C 0.47 22.42 7.84 179.06 1.40 23.82 16 22 S -0.74 -36.30 29.49 -56.49 -1.67 -37.96 16 23 C 0.04 1.42 4.95 86.32 0.43 1.85 16 24 C 0.11 3.25 3.30 30.63 0.10 3.35 16 25 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 26 C -0.14 -4.19 5.04 30.59 0.15 -4.03 16 27 C -0.14 -3.36 9.81 71.98 0.71 -2.65 16 28 O -0.37 -10.56 9.37 -148.98 -1.40 -11.96 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 1.01 7.83 -2.39 -0.02 0.99 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.10 2.54 8.09 -2.39 -0.02 2.52 16 35 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.11 4.30 7.54 -2.39 -0.02 4.29 16 37 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 38 H 0.29 12.45 8.30 -92.71 -0.77 11.68 16 39 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.09 3.09 7.61 -2.39 -0.02 3.07 16 41 H 0.11 3.15 7.31 -2.39 -0.02 3.13 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 2.78 6.73 -2.39 -0.02 2.76 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.06 2.11 6.02 -2.39 -0.01 2.09 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.47 7.82 -2.39 -0.02 1.45 16 48 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -62.22 392.93 0.98 -61.24 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.94 Total: 35.57 kcal Atomic # 6 Polarization: 32.88 SS G_CDS: 8.22 Total: 41.10 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -7.14 Total: -122.10 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.40 Total: -11.96 kcal Atomic # 14 Polarization: 32.08 SS G_CDS: 2.03 Total: 34.11 kcal Atomic # 16 Polarization: -36.30 SS G_CDS: -1.67 Total: -37.96 kcal Total: -62.22 0.98 -61.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817365614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.793 kcal (2) G-P(sol) polarization free energy of solvation -62.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds