Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 C 1.53003 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46883 * 55.00822 * 4 3 2 6 6 O 1.42893 * 109.47417 * 295.00656 * 4 3 2 7 7 C 1.53004 * 109.46857 * 174.99957 * 4 3 2 8 8 N 1.46903 * 109.47014 * 185.00232 * 7 4 3 9 9 C 1.37938 * 110.99970 * 172.89927 * 8 7 4 10 10 C 1.38806 * 126.11840 * 26.14183 * 9 8 7 11 11 C 1.43197 * 126.82462 * 359.97438 * 10 9 8 12 12 N 5.95810 * 106.06815 * 10.56726 * 2 1 3 13 13 C 1.47417 * 106.34525 * 180.02562 * 10 9 8 14 14 C 1.40833 * 126.45876 * 180.02562 * 13 10 9 15 15 H 1.07996 * 120.00515 * 359.97438 * 14 13 10 16 16 C 1.39996 * 119.99720 * 180.02562 * 14 13 10 17 17 N 1.30821 * 120.00140 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 120.00098 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47676 * 89.99691 * 18 16 14 20 20 H 1.48504 * 109.46871 * 209.99868 * 18 16 14 21 21 H 1.48501 * 109.46703 * 329.99243 * 18 16 14 22 22 N 1.32767 * 107.07334 * 359.97438 * 13 10 9 23 23 N 1.36205 * 126.11462 * 205.83606 * 9 8 7 24 24 C 1.39778 * 125.18333 * 359.97438 * 23 9 8 25 25 C 1.38976 * 120.08306 * 323.58707 * 24 23 9 26 26 C 1.38071 * 119.92122 * 179.69885 * 25 24 23 27 27 C 1.38318 * 120.07872 * 0.57897 * 26 25 24 28 28 C 1.38309 * 120.15874 * 359.71989 * 27 26 25 29 29 C 1.38080 * 120.07895 * 359.97438 * 28 27 26 30 30 H 1.09006 * 109.46683 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46896 * 299.98992 * 1 2 3 32 32 H 1.08996 * 109.47375 * 59.99802 * 1 2 3 33 33 H 1.09004 * 109.46780 * 240.00245 * 2 1 3 34 34 H 1.08997 * 109.47448 * 120.00747 * 2 1 3 35 35 H 1.08996 * 109.46858 * 60.00557 * 3 2 1 36 36 H 1.08996 * 109.47199 * 300.00306 * 3 2 1 37 37 H 0.96700 * 113.99980 * 299.99620 * 6 4 3 38 38 H 1.09001 * 109.46746 * 65.00827 * 7 4 3 39 39 H 1.08994 * 109.47388 * 305.00224 * 7 4 3 40 40 H 1.00899 * 111.00158 * 296.85576 * 8 7 4 41 41 H 0.97003 * 119.99789 * 179.97438 * 17 16 14 42 42 H 1.08003 * 120.03253 * 359.97438 * 25 24 23 43 43 H 1.08001 * 119.96057 * 180.29613 * 26 25 24 44 44 H 1.07998 * 119.91762 * 179.73995 * 27 26 25 45 45 H 1.07992 * 119.96277 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.04011 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8533 -0.8428 6 8 4.0469 0.8728 1.2200 7 6 4.0799 2.8796 -0.1264 8 7 5.5439 2.8709 -0.2475 9 6 6.0249 4.1345 -0.5207 10 6 5.4109 5.3336 -0.1863 11 6 4.1664 5.4978 0.5027 12 7 3.1791 5.6282 1.0500 13 6 6.2943 6.4045 -0.6825 14 6 6.0748 7.7908 -0.5676 15 1 5.1861 8.1580 -0.0760 16 6 7.0083 8.6930 -1.0915 17 7 8.0847 8.2483 -1.6873 18 14 6.7177 10.5320 -0.9384 19 1 7.3215 11.0252 0.3254 20 1 7.3429 11.2295 -2.0908 21 1 5.2577 10.8032 -0.9284 22 7 7.3361 5.8154 -1.2572 23 7 7.1900 4.4287 -1.1619 24 6 8.0992 3.4873 -1.6527 25 6 8.3263 2.3078 -0.9537 26 6 9.2204 1.3774 -1.4448 27 6 9.8987 1.6234 -2.6249 28 6 9.6798 2.7988 -3.3201 29 6 8.7824 3.7310 -2.8382 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.7620 1.3471 2.0131 38 1 3.7920 3.4460 0.7593 39 1 3.6449 3.3433 -1.0116 40 1 5.9733 2.4924 0.5835 41 1 8.7313 8.8735 -2.0506 42 1 7.8006 2.1173 -0.0296 43 1 9.3938 0.4584 -0.9045 44 1 10.6006 0.8957 -3.0045 45 1 10.2114 2.9878 -4.2409 46 1 8.6117 4.6485 -3.3817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252780125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = 67.230838 kcal Electronic energy + Delta-G solvation = -29048.505867 eV Core-core repulsion = 25132.227533 eV Total energy + Delta-G solvation = -3916.278334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.31185 -38.61741 -38.06662 -35.80115 -35.07233 -34.24871 -33.74737 -32.11236 -30.67711 -30.03767 -28.71459 -27.73011 -26.19364 -25.41889 -22.87107 -22.18457 -21.71700 -21.35134 -20.47066 -19.90103 -17.86022 -16.95433 -16.59826 -16.51444 -16.31097 -15.70485 -15.30883 -14.98106 -14.63631 -14.43866 -14.17595 -14.04052 -13.73768 -13.52906 -13.33804 -13.08270 -12.95795 -12.61476 -12.41739 -12.15950 -12.03393 -11.95366 -11.91597 -11.73252 -11.40864 -11.32325 -11.26151 -11.18679 -10.86618 -10.83881 -10.80468 -10.67001 -10.27818 -10.06957 -9.74857 -9.21730 -8.90620 -8.64048 -8.61717 -7.58614 -7.23460 -6.69018 -4.68166 1.39917 1.71591 2.46934 2.98395 3.09318 3.13498 3.18700 3.52616 3.72609 3.93565 4.05690 4.18830 4.35886 4.38801 4.70416 4.84568 4.87070 5.05979 5.12939 5.17195 5.21427 5.27064 5.33036 5.38654 5.42899 5.45710 5.66830 5.67900 5.70555 5.73977 5.82237 5.86701 5.91205 6.03708 6.06730 6.17102 6.20524 6.24762 6.44548 6.64987 6.72402 6.81086 7.00355 7.06898 7.11301 7.24769 7.33638 7.53017 8.03826 8.30015 8.46151 8.54755 8.80491 9.47465 10.25259 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008004 B = 0.004139 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.260863 B = 6763.768349 C = 9812.352867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.151 4.151 4 C 0.112 3.888 5 H 0.109 0.891 6 O -0.560 6.560 7 C 0.027 3.973 8 N -0.613 5.613 9 C 0.307 3.693 10 C -0.272 4.272 11 C 0.324 3.676 12 N -0.498 5.498 13 C 0.262 3.738 14 C -0.428 4.428 15 H 0.086 0.914 16 C 0.074 3.926 17 N -0.752 5.752 18 Si 0.913 3.087 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.262 1.262 22 N -0.320 5.320 23 N -0.331 5.331 24 C 0.191 3.809 25 C -0.132 4.132 26 C -0.104 4.104 27 C -0.145 4.145 28 C -0.106 4.106 29 C -0.113 4.113 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.371 0.629 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.362 0.638 41 H 0.279 0.721 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 -13.847 -0.091 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.189 4.189 4 C 0.052 3.948 5 H 0.127 0.873 6 O -0.365 6.365 7 C -0.102 4.102 8 N -0.247 5.247 9 C 0.081 3.919 10 C -0.293 4.293 11 C 0.014 3.986 12 N -0.179 5.179 13 C 0.110 3.890 14 C -0.467 4.467 15 H 0.104 0.896 16 C -0.149 4.149 17 N -0.377 5.377 18 Si 0.738 3.262 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.185 1.185 22 N -0.149 5.149 23 N -0.103 5.103 24 C 0.097 3.903 25 C -0.153 4.153 26 C -0.123 4.123 27 C -0.164 4.164 28 C -0.125 4.125 29 C -0.133 4.133 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.218 0.782 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.190 0.810 41 H 0.090 0.910 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.303 -14.146 -1.025 14.369 hybrid contribution -0.808 1.609 1.287 2.214 sum -3.111 -12.536 0.263 12.919 Atomic orbital electron populations 1.21791 0.96063 1.01425 1.01798 1.21433 0.95418 0.96213 1.02504 1.22274 0.95615 0.97819 1.03231 1.22026 0.92207 0.92697 0.87863 0.87350 1.86577 1.77042 1.57186 1.15654 1.23010 0.86175 0.97847 1.03189 1.56521 1.06739 1.18968 1.42496 1.19088 0.89215 0.87772 0.95861 1.17293 0.97152 0.93993 1.20826 1.24552 0.91269 0.91505 0.91258 1.81140 1.12574 1.09582 1.14570 1.20234 0.86841 0.92395 0.89555 1.18643 1.06662 0.87274 1.34147 0.89591 1.25890 0.94193 1.01422 0.93437 1.69873 1.06839 1.36775 1.24222 0.86208 0.79846 0.81514 0.78655 1.19381 1.20114 1.18547 1.79147 1.22759 0.78001 1.34982 1.46321 1.13577 1.07375 1.42981 1.17404 0.91575 0.88238 0.93114 1.20921 1.00068 0.94246 1.00064 1.20834 0.96425 0.98628 0.96379 1.21036 1.01211 0.97804 0.96339 1.20965 0.97870 0.93790 0.99829 1.21081 0.97291 1.00326 0.94605 0.92858 0.92841 0.92806 0.92029 0.91406 0.91472 0.90842 0.78161 0.92612 0.89346 0.80967 0.91020 0.86116 0.86072 0.86462 0.86010 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.12 -1.09 5.83 -26.73 -0.16 -1.24 16 3 C -0.15 -1.55 4.89 -26.73 -0.13 -1.68 16 4 C 0.11 1.27 3.21 -26.73 -0.09 1.19 16 5 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 6 O -0.56 -6.18 12.53 -35.23 -0.44 -6.62 16 7 C 0.03 0.39 3.95 -3.82 -0.02 0.38 16 8 N -0.61 -9.65 5.33 -59.57 -0.32 -9.97 16 9 C 0.31 6.18 6.90 -152.81 -1.06 5.12 16 10 C -0.27 -6.14 6.06 -104.03 -0.63 -6.77 16 11 C 0.32 6.95 12.26 -22.46 -0.28 6.67 16 12 N -0.50 -10.57 17.99 41.85 0.75 -9.81 16 13 C 0.26 6.79 6.94 -82.75 -0.57 6.21 16 14 C -0.43 -11.17 9.26 -37.94 -0.35 -11.52 16 15 H 0.09 2.18 7.85 -52.49 -0.41 1.77 16 16 C 0.07 1.83 5.50 -17.32 -0.10 1.74 16 17 N -0.75 -19.38 11.95 55.55 0.66 -18.71 16 18 Si 0.91 18.59 29.56 -169.99 -5.02 13.56 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 N -0.32 -8.24 10.47 33.37 0.35 -7.89 16 23 N -0.33 -7.24 3.72 -9.46 -0.04 -7.28 16 24 C 0.19 3.64 6.34 -83.69 -0.53 3.11 16 25 C -0.13 -2.09 9.07 -39.37 -0.36 -2.44 16 26 C -0.10 -1.38 10.04 -39.61 -0.40 -1.78 16 27 C -0.15 -1.86 10.04 -39.53 -0.40 -2.26 16 28 C -0.11 -1.52 10.04 -39.61 -0.40 -1.92 16 29 C -0.11 -2.03 9.74 -39.37 -0.38 -2.41 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.64 7.82 -51.93 -0.41 0.23 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.37 3.20 9.05 45.56 0.41 3.61 16 38 H 0.06 0.86 5.33 -51.93 -0.28 0.59 16 39 H 0.09 1.40 7.95 -51.93 -0.41 0.99 16 40 H 0.36 5.18 7.27 -39.29 -0.29 4.89 16 41 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 42 H 0.12 1.78 6.14 -52.48 -0.32 1.46 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 46 H 0.13 2.64 8.05 -52.49 -0.42 2.21 16 LS Contribution 391.77 15.07 5.90 5.90 Total: -1.00 -29.00 391.77 -9.10 -38.10 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -5.49 Total: 11.24 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -5.46 Total: -8.53 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 1.41 Total: -53.66 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.44 Total: -6.62 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.00 -9.10 -38.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252780125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.333 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds