Wall clock time and date at job start Sat Apr 11 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46806 * 2 1 4 4 C 1.52996 * 109.47328 * 240.00351 * 2 1 3 5 5 C 1.50699 * 109.47235 * 59.99852 * 4 2 1 6 6 H 1.07996 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99790 * 180.02562 * 5 4 2 8 8 N 1.31513 * 119.99822 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00076 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47136 * 90.00205 * 9 7 5 11 11 H 1.48503 * 109.47010 * 210.00270 * 9 7 5 12 12 H 1.48500 * 109.46954 * 330.00103 * 9 7 5 13 13 C 1.52993 * 109.47165 * 119.99765 * 2 1 3 14 14 N 1.46496 * 109.47558 * 300.00673 * 13 2 1 15 15 C 1.34777 * 120.00266 * 180.02562 * 14 13 2 16 16 O 1.21355 * 120.00101 * 0.26718 * 15 14 13 17 17 C 1.49336 * 119.99819 * 179.97438 * 15 14 13 18 18 O 1.21395 * 120.00186 * 359.97438 * 17 15 14 19 19 N 1.34777 * 119.99815 * 179.97438 * 17 15 14 20 20 C 1.40475 * 120.00201 * 179.97438 * 19 17 15 21 21 C 1.40338 * 126.11071 * 0.03111 * 20 19 17 22 22 N 1.30832 * 108.20724 * 179.97438 * 21 20 19 23 23 N 1.40049 * 108.36529 * 0.02562 * 22 21 20 24 24 C 1.46508 * 125.99419 * 180.02562 * 23 22 21 25 25 C 1.53006 * 109.46650 * 304.97132 * 24 23 22 26 26 F 1.39898 * 109.46697 * 179.97438 * 25 24 23 27 27 C 1.35230 * 108.01439 * 359.75409 * 23 22 21 28 28 H 1.08992 * 109.47399 * 299.99952 * 1 2 3 29 29 H 1.09001 * 109.47194 * 60.00125 * 1 2 3 30 30 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47248 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47844 * 300.00086 * 3 2 1 33 33 H 1.09002 * 109.47097 * 59.99871 * 3 2 1 34 34 H 1.09004 * 109.47108 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46870 * 299.99783 * 4 2 1 36 36 H 0.97002 * 119.99998 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.47340 * 179.97438 * 13 2 1 38 38 H 1.09000 * 109.46925 * 60.00283 * 13 2 1 39 39 H 0.97004 * 120.00206 * 359.97438 * 14 13 2 40 40 H 0.96999 * 120.00047 * 0.02562 * 19 17 15 41 41 H 1.07997 * 125.89709 * 359.95386 * 21 20 19 42 42 H 1.08996 * 109.47111 * 64.96583 * 24 23 22 43 43 H 1.08995 * 109.47153 * 184.97348 * 24 23 22 44 44 H 1.08994 * 109.47080 * 300.00094 * 25 24 23 45 45 H 1.09005 * 109.47124 * 60.00079 * 25 24 23 46 46 H 1.07992 * 126.18271 * 180.27228 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.5377 -0.0107 -2.4797 6 1 0.9165 0.8671 -2.3806 7 6 1.8705 -0.4821 -3.7320 8 7 1.4325 0.1382 -4.8058 9 14 2.9445 -2.0008 -3.9033 10 1 2.0860 -3.2117 -3.9483 11 1 3.7360 -1.9084 -5.1564 12 1 3.8652 -2.0896 -2.7416 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0307 2.4454 15 6 1.8776 -0.4909 3.6695 16 8 2.5798 -1.4743 3.7809 17 6 1.3802 0.2134 4.8888 18 8 0.6825 1.2006 4.7774 19 7 1.7058 -0.2470 6.1129 20 6 1.2383 0.4157 7.2599 21 6 0.4285 1.5616 7.2807 22 7 0.2034 1.8806 8.5294 23 7 0.8602 0.9525 9.3471 24 6 0.8642 0.9468 10.8122 25 6 1.3528 2.3027 11.3260 26 9 1.3560 2.2975 12.7250 27 6 1.4852 0.0590 8.5473 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 3.1301 -0.7207 -1.2494 35 1 1.6767 -1.7488 -1.2493 36 1 1.6663 -0.1936 -5.6868 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -1.7488 1.2492 39 1 0.9941 0.7582 2.3565 40 1 2.2635 -1.0356 6.2019 41 1 0.0557 2.0894 6.4153 42 1 -0.1460 0.7625 11.1775 43 1 1.5293 0.1613 11.1707 44 1 2.3630 2.4871 10.9606 45 1 0.6877 3.0883 10.9675 46 1 2.0753 -0.7848 8.8730 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261825821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:48 Heat of formation + Delta-G solvation = -68.382259 kcal Electronic energy + Delta-G solvation = -28525.042058 eV Core-core repulsion = 24172.113874 eV Total energy + Delta-G solvation = -4352.928184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.76143 -42.60089 -41.55720 -39.85103 -38.66371 -36.41488 -35.20811 -34.60754 -33.95492 -31.13541 -29.89120 -29.47211 -28.07479 -27.98941 -25.72423 -24.76222 -24.07344 -22.46505 -22.07054 -21.11590 -20.09946 -19.10283 -18.86764 -18.60493 -17.76476 -17.44123 -17.17124 -17.04052 -16.56354 -16.44937 -16.14610 -15.92303 -15.85479 -15.42827 -15.30849 -15.00407 -14.87843 -14.73127 -14.20103 -14.17162 -13.98959 -13.86787 -13.77955 -12.92032 -12.85997 -12.69258 -12.63013 -12.61263 -12.28172 -12.17050 -12.15854 -11.91233 -11.75086 -11.68584 -11.51173 -11.26441 -10.91859 -10.68919 -10.67894 -10.52298 -10.23499 -8.89122 -8.19543 -6.20230 0.14746 0.80145 1.06721 1.39396 1.41819 1.49655 1.51789 1.64038 2.26037 2.41931 2.63365 3.16087 3.23489 3.39076 3.64737 3.78664 3.87679 3.97206 4.00821 4.05258 4.15818 4.20406 4.30042 4.46457 4.62166 4.63392 4.70602 4.73952 4.79044 4.92920 4.94975 4.99352 5.10724 5.20690 5.32711 5.40280 5.43524 5.56829 5.60742 5.68928 5.77487 5.90059 5.92834 6.30901 6.40705 6.52233 6.73741 6.87209 6.91598 7.42446 8.96173 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.038890 B = 0.001675 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.803441 B =16715.551731 C =17128.970381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.127 4.127 4 C -0.002 4.002 5 C -0.504 4.504 6 H 0.048 0.952 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.937 3.063 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.246 1.246 13 C 0.134 3.866 14 N -0.681 5.681 15 C 0.511 3.489 16 O -0.543 6.543 17 C 0.511 3.489 18 O -0.527 6.527 19 N -0.598 5.598 20 C -0.032 4.032 21 C 0.043 3.957 22 N -0.313 5.313 23 N -0.367 5.367 24 C 0.108 3.892 25 C 0.054 3.946 26 F -0.217 7.217 27 C 0.061 3.939 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.418 0.582 40 H 0.433 0.567 41 H 0.194 0.806 42 H 0.103 0.897 43 H 0.145 0.855 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.898 -1.733 34.622 34.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.061 4.061 3 C -0.184 4.184 4 C -0.039 4.039 5 C -0.542 4.542 6 H 0.067 0.933 7 C -0.193 4.193 8 N -0.595 5.595 9 Si 0.762 3.238 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.169 1.169 13 C 0.011 3.989 14 N -0.334 5.334 15 C 0.292 3.708 16 O -0.421 6.421 17 C 0.292 3.708 18 O -0.403 6.403 19 N -0.245 5.245 20 C -0.136 4.136 21 C -0.143 4.143 22 N -0.135 5.135 23 N -0.151 5.151 24 C -0.013 4.013 25 C -0.002 4.002 26 F -0.199 7.199 27 C -0.088 4.088 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.256 0.744 40 H 0.272 0.728 41 H 0.210 0.790 42 H 0.121 0.879 43 H 0.163 0.837 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.343 -0.934 35.375 35.412 hybrid contribution 0.598 -0.925 -1.621 1.959 sum 1.942 -1.859 33.754 33.861 Atomic orbital electron populations 1.21736 0.94159 1.01494 1.01059 1.20588 0.96363 0.96111 0.93004 1.21733 1.00557 0.95078 1.01062 1.19554 0.96239 0.95579 0.92576 1.21392 1.30263 1.12286 0.90281 0.93346 1.25881 0.97513 1.00082 0.95816 1.70057 1.48231 1.42744 0.98459 0.85848 0.79802 0.80099 0.78019 1.19720 1.21798 1.16944 1.21556 0.99283 0.95997 0.82027 1.45865 1.51264 1.31724 1.04546 1.19878 0.81554 0.84608 0.84804 1.90761 1.37851 1.26548 1.86919 1.20009 0.81458 0.84649 0.84643 1.90671 1.37190 1.25950 1.86463 1.42208 1.49878 1.30450 1.01974 1.17875 1.09122 0.99803 0.86809 1.24490 0.98077 0.96285 0.95484 1.77385 1.19724 1.14820 1.01587 1.48266 1.38932 1.21226 1.06636 1.22462 1.06202 0.99941 0.72680 1.22163 1.04397 0.98598 0.75040 1.92785 1.98225 1.97671 1.31182 1.22528 1.00404 0.97920 0.87951 0.91904 0.93671 0.93081 0.93106 0.93655 0.91905 0.96133 0.96293 0.92945 0.90905 0.90853 0.74382 0.72758 0.78961 0.87852 0.83724 0.89244 0.90177 0.75575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 8.05 71.98 0.58 -3.64 16 2 C -0.06 -2.05 0.54 -52.18 -0.03 -2.08 16 3 C -0.13 -4.22 8.05 71.98 0.58 -3.64 16 4 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 5 C -0.50 -26.96 8.20 25.60 0.21 -26.75 16 6 H 0.05 2.83 5.92 -2.91 -0.02 2.81 16 7 C 0.00 0.17 5.47 84.66 0.46 0.64 16 8 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 9 Si 0.94 43.32 27.47 68.60 1.88 45.21 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 13 C 0.13 3.86 4.56 86.38 0.39 4.25 16 14 N -0.68 -16.97 4.95 -464.56 -2.30 -19.27 16 15 C 0.51 12.47 7.89 87.23 0.69 13.16 16 16 O -0.54 -14.99 16.48 -3.26 -0.05 -15.05 16 17 C 0.51 11.16 7.86 87.23 0.69 11.84 16 18 O -0.53 -13.33 13.63 -3.39 -0.05 -13.38 16 19 N -0.60 -9.74 5.45 -305.42 -1.67 -11.40 16 20 C -0.03 -0.52 6.90 37.71 0.26 -0.26 16 21 C 0.04 0.90 10.84 85.35 0.93 1.82 16 22 N -0.31 -6.02 12.40 -56.72 -0.70 -6.72 16 23 N -0.37 -4.19 3.68 -347.38 -1.28 -5.47 16 24 C 0.11 0.51 6.96 86.38 0.60 1.11 16 25 C 0.05 0.39 7.74 71.98 0.56 0.95 16 26 F -0.22 -2.41 17.36 44.97 0.78 -1.63 16 27 C 0.06 0.55 11.49 83.62 0.96 1.51 16 28 H 0.06 1.70 6.86 -2.39 -0.02 1.69 16 29 H 0.04 1.76 6.62 -2.39 -0.02 1.75 16 30 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.04 1.77 6.62 -2.39 -0.02 1.75 16 33 H 0.06 1.70 6.86 -2.39 -0.02 1.69 16 34 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 35 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.42 9.80 5.63 -92.71 -0.52 9.28 16 40 H 0.43 5.09 8.29 -92.71 -0.77 4.32 16 41 H 0.19 4.52 5.92 -2.91 -0.02 4.50 16 42 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.14 -0.30 8.07 -2.39 -0.02 -0.32 16 44 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.23 -0.17 8.06 -2.91 -0.02 -0.19 16 Total: -1.00 -72.24 382.72 3.57 -68.67 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -0.31 Total: 18.35 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 6.97 Total: -1.05 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -5.65 Total: -101.12 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.10 Total: -28.43 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.63 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -72.24 3.57 -68.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261825821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.285 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds