Wall clock time and date at job start Sat Apr 11 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00559 * 2 1 4 4 N 1.46497 * 109.47184 * 126.62813 * 3 2 1 5 5 C 1.37750 * 127.14934 * 264.03343 * 4 3 2 6 6 C 1.47107 * 126.48516 * 0.03323 * 5 4 3 7 7 C 1.40331 * 119.91130 * 20.52788 * 6 5 4 8 8 C 1.36050 * 120.07945 * 179.76444 * 7 6 5 9 9 C 1.41037 * 119.91624 * 0.49418 * 8 7 6 10 10 C 1.40838 * 120.08761 * 179.74021 * 9 8 7 11 11 H 1.07994 * 120.00413 * 213.04995 * 10 9 8 12 12 C 1.39907 * 119.99583 * 33.04523 * 10 9 8 13 13 N 1.30856 * 120.00097 * 6.71447 * 12 10 9 14 14 Si 1.86807 * 119.99715 * 186.70723 * 12 10 9 15 15 H 1.48502 * 109.46688 * 90.00471 * 14 12 10 16 16 H 1.48494 * 109.47041 * 210.00437 * 14 12 10 17 17 H 1.48494 * 109.47089 * 330.00373 * 14 12 10 18 18 C 1.41049 * 119.83109 * 359.75683 * 9 8 7 19 19 C 1.36043 * 119.90672 * 0.02562 * 18 9 8 20 20 N 1.31761 * 107.02948 * 180.26096 * 5 4 3 21 21 N 1.28517 * 109.85726 * 359.74879 * 20 5 4 22 22 C 1.31776 * 110.08113 * 359.97438 * 21 20 5 23 23 N 1.37979 * 126.33664 * 179.97438 * 22 21 20 24 24 C 1.47019 * 111.00088 * 252.39003 * 23 22 21 25 25 C 1.53096 * 109.25265 * 182.35356 * 24 23 22 26 26 O 1.43007 * 109.29863 * 303.21658 * 25 24 23 27 27 C 1.43020 * 113.73618 * 58.65014 * 26 25 24 28 28 C 1.47013 * 111.00067 * 16.07555 * 23 22 21 29 29 H 1.08003 * 119.99727 * 5.34609 * 1 2 3 30 30 H 1.08000 * 120.00799 * 185.35315 * 1 2 3 31 31 H 1.08004 * 119.99653 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.46732 * 6.63202 * 3 2 1 33 33 H 1.08996 * 109.47452 * 246.63463 * 3 2 1 34 34 H 1.07995 * 119.95863 * 0.02562 * 7 6 5 35 35 H 1.08005 * 120.03745 * 180.25756 * 8 7 6 36 36 H 0.97002 * 119.99805 * 179.97438 * 13 12 10 37 37 H 1.08001 * 120.04108 * 179.97438 * 18 9 8 38 38 H 1.08009 * 119.95126 * 179.97438 * 19 18 9 39 39 H 1.08996 * 109.46618 * 62.44096 * 24 23 22 40 40 H 1.08998 * 109.54205 * 302.30702 * 24 23 22 41 41 H 1.09010 * 109.50211 * 183.26179 * 25 24 23 42 42 H 1.08998 * 109.50916 * 63.17753 * 25 24 23 43 43 H 1.08997 * 109.50519 * 61.26757 * 27 26 25 44 44 H 1.09008 * 109.50525 * 181.35833 * 27 26 25 45 45 H 1.09001 * 109.50875 * 57.67206 * 28 23 22 46 46 H 1.08997 * 109.54191 * 297.56038 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0214 1.3158 1.1084 5 6 2.8405 1.8647 2.3588 6 6 1.6375 2.5589 2.8437 7 6 0.4049 2.3511 2.2060 8 6 -0.7107 2.9876 2.6546 9 6 -0.6253 3.8651 3.7555 10 6 -1.7768 4.5301 4.2194 11 1 -1.6957 5.5222 4.6381 12 6 -3.0260 3.9053 4.1377 13 7 -3.1094 2.6571 3.7539 14 14 -4.5748 4.8530 4.5769 15 1 -5.1070 5.5215 3.3623 16 1 -5.5938 3.9150 5.1124 17 1 -4.2545 5.8757 5.6048 18 6 0.6166 4.0753 4.3904 19 6 1.7268 3.4318 3.9388 20 7 3.9507 1.6548 3.0367 21 7 4.7945 1.0179 2.3060 22 6 4.2761 0.7813 1.1178 23 7 4.8916 0.1214 0.0740 24 6 5.2673 1.0594 -0.9940 25 6 5.8919 0.2797 -2.1541 26 8 7.0105 -0.4695 -1.6720 27 6 6.6794 -1.3936 -0.6319 28 6 6.0639 -0.6308 0.5442 29 1 -0.5400 0.9313 -0.0871 30 1 -0.5401 -0.9312 0.0873 31 1 1.8499 -0.9354 -0.0004 32 1 1.3612 2.1301 0.1187 33 1 2.5982 1.4159 -0.9433 34 1 0.3410 1.6820 1.3608 35 1 -1.6599 2.8241 2.1659 36 1 -3.9754 2.2238 3.6977 37 1 0.6860 4.7468 5.2334 38 1 2.6782 3.5925 4.4242 39 1 5.9897 1.7786 -0.6081 40 1 4.3802 1.5862 -1.3453 41 1 6.2247 0.9765 -2.9234 42 1 5.1521 -0.4012 -2.5751 43 1 5.9622 -2.1231 -1.0079 44 1 7.5819 -1.9076 -0.3007 45 1 5.7576 -1.3371 1.3158 46 1 6.7998 0.0604 0.9549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262983505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:51 Heat of formation + Delta-G solvation = 95.349911 kcal Electronic energy + Delta-G solvation = -29464.348603 eV Core-core repulsion = 25549.289603 eV Total energy + Delta-G solvation = -3915.059000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.37426 -39.69884 -37.77070 -36.20985 -35.85107 -33.92838 -32.56874 -31.48817 -30.93999 -29.74223 -28.92938 -27.25126 -26.33939 -25.37828 -24.31479 -22.21871 -21.88689 -21.06761 -20.25081 -19.94846 -19.81784 -17.63235 -17.45199 -16.49357 -16.30089 -15.94985 -15.66221 -15.59579 -15.20498 -15.04035 -14.75406 -14.56924 -14.17982 -13.96524 -13.45782 -13.27323 -12.81100 -12.74222 -12.60330 -12.16816 -11.95646 -11.75370 -11.65818 -11.49420 -11.38571 -11.29149 -11.15649 -10.97283 -10.86881 -10.77890 -10.35395 -10.07713 -9.91155 -9.75398 -9.64301 -9.53314 -9.34377 -9.26508 -8.34826 -7.78182 -7.16467 -6.94858 -4.60282 1.75761 2.03044 2.52437 2.77123 2.94080 2.95899 2.97787 2.99892 3.50714 3.56738 3.75179 3.77189 4.48236 4.49020 4.62152 4.71231 4.79392 4.85203 4.89326 5.03936 5.06381 5.21133 5.26881 5.33675 5.40595 5.43370 5.54474 5.56254 5.61020 5.76580 5.82609 5.91253 6.08034 6.23408 6.31711 6.51557 6.55327 6.63141 6.72720 6.80880 6.85298 6.88359 7.00944 7.12321 7.40777 7.44344 7.69234 7.82339 7.83361 8.04622 8.37689 8.62643 8.70634 9.27168 9.97354 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.002662 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.473794 B =10516.879313 C =11224.283642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.181 4.181 3 C 0.136 3.864 4 N -0.474 5.474 5 C 0.289 3.711 6 C -0.176 4.176 7 C -0.094 4.094 8 C -0.159 4.159 9 C 0.126 3.874 10 C -0.447 4.447 11 H 0.083 0.917 12 C 0.071 3.929 13 N -0.789 5.789 14 Si 0.917 3.083 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.260 1.260 18 C -0.223 4.223 19 C -0.034 4.034 20 N -0.312 5.312 21 N -0.316 5.316 22 C 0.315 3.685 23 N -0.450 5.450 24 C 0.018 3.982 25 C 0.068 3.932 26 O -0.384 6.384 27 C 0.064 3.936 28 C 0.037 3.963 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.284 0.716 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 -5.664 -12.508 15.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.200 4.200 3 C 0.013 3.987 4 N -0.167 5.167 5 C 0.028 3.972 6 C -0.181 4.181 7 C -0.114 4.114 8 C -0.178 4.178 9 C 0.123 3.877 10 C -0.476 4.476 11 H 0.101 0.899 12 C -0.148 4.148 13 N -0.414 5.414 14 Si 0.741 3.259 15 H -0.192 1.192 16 H -0.201 1.201 17 H -0.184 1.184 18 C -0.243 4.243 19 C -0.055 4.055 20 N -0.152 5.152 21 N -0.161 5.161 22 C -0.041 4.041 23 N -0.175 5.175 24 C -0.110 4.110 25 C -0.009 4.009 26 O -0.302 6.302 27 C -0.013 4.013 28 C -0.090 4.090 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.123 0.877 45 H 0.112 0.888 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.511 -6.182 -11.707 15.739 hybrid contribution -1.564 0.584 -0.364 1.709 sum 6.947 -5.598 -12.071 15.010 Atomic orbital electron populations 1.24020 0.95556 1.02927 0.96869 1.22993 0.96121 0.97920 1.02936 1.21056 0.91530 0.98137 0.87954 1.46133 1.12118 1.45436 1.13060 1.23211 0.96941 0.96803 0.80255 1.16901 0.87961 1.08400 1.04858 1.20988 0.92319 0.99053 0.99029 1.20944 0.96942 1.01814 0.98146 1.17818 0.91927 0.89366 0.88589 1.19661 0.91072 1.02585 1.34296 0.89906 1.25994 1.01114 0.94730 0.92933 1.69787 1.27404 1.10460 1.33717 0.86161 0.79891 0.80088 0.79795 1.19156 1.20072 1.18425 1.20780 0.93579 1.07049 1.02882 1.20327 0.97547 0.93968 0.93635 1.74535 0.99512 1.17160 1.23986 1.74568 1.24156 1.16386 1.01010 1.22028 0.85475 1.01995 0.94566 1.58617 1.27646 1.24043 1.07171 1.22985 1.00937 0.94595 0.92503 1.22655 0.88889 0.94812 0.94575 1.87998 1.33250 1.54766 1.54171 1.22766 1.00662 0.91139 0.86732 1.22682 0.90302 0.98033 0.98026 0.87495 0.87597 0.86715 0.87177 0.89133 0.87661 0.86050 0.90512 0.88091 0.87959 0.92556 0.89536 0.87906 0.91943 0.92101 0.87726 0.88757 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 12.86 29.02 0.37 -1.58 16 2 C -0.18 -2.38 9.55 -36.02 -0.34 -2.72 16 3 C 0.14 1.89 5.73 -5.20 -0.03 1.86 16 4 N -0.47 -8.32 2.82 -116.10 -0.33 -8.65 16 5 C 0.29 6.12 7.66 -153.51 -1.18 4.94 16 6 C -0.18 -3.92 5.88 -104.73 -0.62 -4.53 16 7 C -0.09 -2.02 8.50 -39.58 -0.34 -2.35 16 8 C -0.16 -3.74 8.55 -39.31 -0.34 -4.08 16 9 C 0.13 3.12 5.52 -106.79 -0.59 2.53 16 10 C -0.45 -10.88 9.01 -37.97 -0.34 -11.22 16 11 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 12 C 0.07 1.64 5.29 -17.34 -0.09 1.55 16 13 N -0.79 -18.77 10.91 55.55 0.61 -18.16 16 14 Si 0.92 17.28 29.57 -169.99 -5.03 12.25 16 15 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 16 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 18 C -0.22 -5.21 9.73 -39.31 -0.38 -5.60 16 19 C -0.03 -0.78 9.63 -39.59 -0.38 -1.16 16 20 N -0.31 -7.00 12.04 32.53 0.39 -6.61 16 21 N -0.32 -6.45 11.36 30.28 0.34 -6.11 16 22 C 0.32 5.44 6.93 -319.13 -2.21 3.23 16 23 N -0.45 -6.00 4.72 -174.27 -0.82 -6.83 16 24 C 0.02 0.19 5.51 -3.71 -0.02 0.17 16 25 C 0.07 0.60 7.01 37.21 0.26 0.86 16 26 O -0.38 -4.05 10.83 -35.23 -0.38 -4.43 16 27 C 0.06 0.59 7.01 37.21 0.26 0.85 16 28 C 0.04 0.45 5.08 -3.71 -0.02 0.43 16 29 H 0.11 1.35 7.01 -52.48 -0.37 0.98 16 30 H 0.11 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.11 1.60 5.49 -51.93 -0.28 1.31 16 33 H 0.09 1.02 6.02 -51.93 -0.31 0.71 16 34 H 0.11 1.95 2.03 -52.49 -0.11 1.84 16 35 H 0.12 2.90 6.39 -52.48 -0.34 2.56 16 36 H 0.28 6.14 8.30 -40.82 -0.34 5.80 16 37 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.10 2.22 7.98 -52.48 -0.42 1.80 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.88 6.01 -51.93 -0.31 0.57 16 41 H 0.10 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 45 H 0.09 1.17 8.13 -51.93 -0.42 0.75 16 46 H 0.06 0.87 8.02 -51.93 -0.42 0.45 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -29.06 371.12 -11.51 -40.57 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -5.91 Total: 9.21 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -5.98 Total: -16.83 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.19 Total: -46.36 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.38 Total: -4.43 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.06 -11.51 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262983505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.915 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds