Wall clock time and date at job start Sat Apr 11 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00559 * 2 1 4 4 N 1.46497 * 109.47184 * 126.62813 * 3 2 1 5 5 C 1.37750 * 127.14934 * 264.03343 * 4 3 2 6 6 C 1.47107 * 126.48516 * 0.03323 * 5 4 3 7 7 C 1.40331 * 119.91130 * 20.52788 * 6 5 4 8 8 C 1.36050 * 120.07945 * 179.76444 * 7 6 5 9 9 C 1.41037 * 119.91624 * 0.49418 * 8 7 6 10 10 C 1.40838 * 120.08761 * 179.74021 * 9 8 7 11 11 H 1.07994 * 120.00413 * 213.04995 * 10 9 8 12 12 C 1.39907 * 119.99583 * 33.04523 * 10 9 8 13 13 N 1.30856 * 120.00097 * 6.71447 * 12 10 9 14 14 Si 1.86807 * 119.99715 * 186.70723 * 12 10 9 15 15 H 1.48502 * 109.46688 * 90.00471 * 14 12 10 16 16 H 1.48494 * 109.47041 * 210.00437 * 14 12 10 17 17 H 1.48494 * 109.47089 * 330.00373 * 14 12 10 18 18 C 1.41049 * 119.83109 * 359.75683 * 9 8 7 19 19 C 1.36043 * 119.90672 * 0.02562 * 18 9 8 20 20 N 1.31761 * 107.02948 * 180.26096 * 5 4 3 21 21 N 1.28517 * 109.85726 * 359.74879 * 20 5 4 22 22 C 1.31776 * 110.08113 * 359.97438 * 21 20 5 23 23 N 1.37979 * 126.33664 * 179.97438 * 22 21 20 24 24 C 1.47019 * 111.00088 * 252.39003 * 23 22 21 25 25 C 1.53096 * 109.25265 * 182.35356 * 24 23 22 26 26 O 1.43007 * 109.29863 * 303.21658 * 25 24 23 27 27 C 1.43020 * 113.73618 * 58.65014 * 26 25 24 28 28 C 1.47013 * 111.00067 * 16.07555 * 23 22 21 29 29 H 1.08003 * 119.99727 * 5.34609 * 1 2 3 30 30 H 1.08000 * 120.00799 * 185.35315 * 1 2 3 31 31 H 1.08004 * 119.99653 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.46732 * 6.63202 * 3 2 1 33 33 H 1.08996 * 109.47452 * 246.63463 * 3 2 1 34 34 H 1.07995 * 119.95863 * 0.02562 * 7 6 5 35 35 H 1.08005 * 120.03745 * 180.25756 * 8 7 6 36 36 H 0.97002 * 119.99805 * 179.97438 * 13 12 10 37 37 H 1.08001 * 120.04108 * 179.97438 * 18 9 8 38 38 H 1.08009 * 119.95126 * 179.97438 * 19 18 9 39 39 H 1.08996 * 109.46618 * 62.44096 * 24 23 22 40 40 H 1.08998 * 109.54205 * 302.30702 * 24 23 22 41 41 H 1.09010 * 109.50211 * 183.26179 * 25 24 23 42 42 H 1.08998 * 109.50916 * 63.17753 * 25 24 23 43 43 H 1.08997 * 109.50519 * 61.26757 * 27 26 25 44 44 H 1.09008 * 109.50525 * 181.35833 * 27 26 25 45 45 H 1.09001 * 109.50875 * 57.67206 * 28 23 22 46 46 H 1.08997 * 109.54191 * 297.56038 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 3.0214 1.3158 1.1084 5 6 2.8405 1.8647 2.3588 6 6 1.6375 2.5589 2.8437 7 6 0.4049 2.3511 2.2060 8 6 -0.7107 2.9876 2.6546 9 6 -0.6253 3.8651 3.7555 10 6 -1.7768 4.5301 4.2194 11 1 -1.6957 5.5222 4.6381 12 6 -3.0260 3.9053 4.1377 13 7 -3.1094 2.6571 3.7539 14 14 -4.5748 4.8530 4.5769 15 1 -5.1070 5.5215 3.3623 16 1 -5.5938 3.9150 5.1124 17 1 -4.2545 5.8757 5.6048 18 6 0.6166 4.0753 4.3904 19 6 1.7268 3.4318 3.9388 20 7 3.9507 1.6548 3.0367 21 7 4.7945 1.0179 2.3060 22 6 4.2761 0.7813 1.1178 23 7 4.8916 0.1214 0.0740 24 6 5.2673 1.0594 -0.9940 25 6 5.8919 0.2797 -2.1541 26 8 7.0105 -0.4695 -1.6720 27 6 6.6794 -1.3936 -0.6319 28 6 6.0639 -0.6308 0.5442 29 1 -0.5400 0.9313 -0.0871 30 1 -0.5401 -0.9312 0.0873 31 1 1.8499 -0.9354 -0.0004 32 1 1.3612 2.1301 0.1187 33 1 2.5982 1.4159 -0.9433 34 1 0.3410 1.6820 1.3608 35 1 -1.6599 2.8241 2.1659 36 1 -3.9754 2.2238 3.6977 37 1 0.6860 4.7468 5.2334 38 1 2.6782 3.5925 4.4242 39 1 5.9897 1.7786 -0.6081 40 1 4.3802 1.5862 -1.3453 41 1 6.2247 0.9765 -2.9234 42 1 5.1521 -0.4012 -2.5751 43 1 5.9622 -2.1231 -1.0079 44 1 7.5819 -1.9076 -0.3007 45 1 5.7576 -1.3371 1.3158 46 1 6.7998 0.0604 0.9549 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262983505.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:50 Heat of formation + Delta-G solvation = 81.494504 kcal Electronic energy + Delta-G solvation = -29464.949418 eV Core-core repulsion = 25549.289603 eV Total energy + Delta-G solvation = -3915.659815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.85223 -40.62467 -39.50656 -37.43161 -36.93507 -35.64171 -33.82830 -32.58378 -32.32930 -31.50722 -30.39280 -28.51950 -27.50581 -27.00005 -25.23655 -23.77023 -23.33696 -22.40268 -21.73461 -21.23918 -21.01285 -19.30733 -18.74133 -17.58340 -17.50005 -17.35694 -16.93130 -16.78275 -16.51408 -15.95844 -15.90596 -15.76164 -15.49680 -15.21104 -15.01732 -14.57677 -14.44140 -14.11009 -13.80052 -13.52396 -13.43232 -13.16116 -12.84869 -12.82440 -12.65774 -12.62049 -12.48633 -12.40566 -12.27708 -11.93330 -11.70513 -11.52857 -11.37669 -11.18121 -11.13332 -10.95179 -10.62504 -10.50284 -9.79090 -9.56755 -8.88438 -8.66857 -6.43276 0.18508 0.84727 1.03529 1.14855 1.41676 1.44298 1.53622 1.54926 1.93014 2.20059 2.53162 2.74010 2.86279 3.45791 3.59394 3.64310 3.72298 3.76665 3.79324 3.90619 4.03080 4.05196 4.14513 4.23977 4.30452 4.36874 4.42897 4.49647 4.53196 4.64854 4.73718 4.80154 4.90852 4.92385 4.94829 5.01251 5.09134 5.18358 5.30958 5.38865 5.49287 5.51739 5.57734 5.63876 5.84316 6.01472 6.03033 6.08593 6.16884 6.25152 6.56837 6.82775 6.89808 7.72705 8.27659 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023614 B = 0.002662 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.473794 B =10516.879313 C =11224.283642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.186 4.186 3 C 0.129 3.871 4 N -0.467 5.467 5 C 0.267 3.733 6 C -0.177 4.177 7 C -0.087 4.087 8 C -0.173 4.173 9 C 0.100 3.900 10 C -0.479 4.479 11 H 0.082 0.918 12 C 0.035 3.965 13 N -0.818 5.818 14 Si 0.987 3.013 15 H -0.258 1.258 16 H -0.269 1.269 17 H -0.260 1.260 18 C -0.235 4.235 19 C -0.044 4.044 20 N -0.339 5.339 21 N -0.352 5.352 22 C 0.340 3.660 23 N -0.443 5.443 24 C 0.016 3.984 25 C 0.072 3.928 26 O -0.397 6.397 27 C 0.072 3.928 28 C 0.035 3.965 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.292 0.708 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.040 0.960 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.126 0.874 45 H 0.087 0.913 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.618 -6.743 -14.862 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.205 4.205 3 C 0.008 3.992 4 N -0.161 5.161 5 C 0.004 3.996 6 C -0.182 4.182 7 C -0.107 4.107 8 C -0.192 4.192 9 C 0.096 3.904 10 C -0.508 4.508 11 H 0.101 0.899 12 C -0.181 4.181 13 N -0.443 5.443 14 Si 0.808 3.192 15 H -0.183 1.183 16 H -0.194 1.194 17 H -0.184 1.184 18 C -0.255 4.255 19 C -0.064 4.064 20 N -0.179 5.179 21 N -0.196 5.196 22 C -0.017 4.017 23 N -0.169 5.169 24 C -0.111 4.111 25 C -0.005 4.005 26 O -0.315 6.315 27 C -0.005 4.005 28 C -0.092 4.092 29 H 0.123 0.877 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.122 0.878 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.145 0.855 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.144 0.856 45 H 0.106 0.894 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.385 -7.268 -14.086 17.932 hybrid contribution -1.343 0.806 0.248 1.586 sum 7.042 -6.462 -13.838 16.818 Atomic orbital electron populations 1.24185 0.95480 1.03644 0.95728 1.22942 0.96241 0.97483 1.03862 1.21353 0.91414 0.98493 0.87962 1.46264 1.12648 1.44440 1.12701 1.22968 0.96536 0.98258 0.81830 1.17080 0.88797 1.07816 1.04479 1.21225 0.91346 0.98684 0.99428 1.20944 0.97294 1.02635 0.98338 1.18141 0.92567 0.90295 0.89358 1.19884 0.92090 1.02998 1.35833 0.89946 1.26781 1.03600 0.95403 0.92349 1.69826 1.28598 1.11604 1.34248 0.85109 0.75864 0.78632 0.79623 1.18282 1.19382 1.18432 1.20914 0.93656 1.07579 1.03325 1.20443 0.97502 0.94282 0.94165 1.74429 1.00240 1.17802 1.25438 1.74508 1.24510 1.18068 1.02518 1.22487 0.85203 0.99464 0.94557 1.58859 1.28151 1.23790 1.06089 1.23143 1.01266 0.94401 0.92302 1.22817 0.88801 0.95201 0.93686 1.87995 1.34251 1.55079 1.54219 1.22833 1.01765 0.90627 0.85258 1.22786 0.89359 0.97578 0.99471 0.87677 0.86070 0.86332 0.87819 0.85951 0.84851 0.86696 0.89732 0.87498 0.87643 0.94118 0.88374 0.85476 0.90350 0.90697 0.85643 0.89449 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 12.86 67.79 0.87 -2.63 16 2 C -0.19 -4.48 9.55 25.65 0.24 -4.24 16 3 C 0.13 3.32 5.73 85.63 0.49 3.82 16 4 N -0.47 -15.97 2.82 -521.23 -1.47 -17.43 16 5 C 0.27 11.40 7.66 135.79 1.04 12.44 16 6 C -0.18 -8.00 5.88 -19.93 -0.12 -8.12 16 7 C -0.09 -3.77 8.50 22.27 0.19 -3.58 16 8 C -0.17 -8.30 8.55 22.45 0.19 -8.11 16 9 C 0.10 5.07 5.52 -21.27 -0.12 4.95 16 10 C -0.48 -23.94 9.01 23.31 0.21 -23.73 16 11 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 12 C 0.03 1.61 5.29 85.24 0.45 2.06 16 13 N -0.82 -39.22 10.91 21.82 0.24 -38.98 16 14 Si 0.99 35.22 29.57 68.60 2.03 37.25 16 15 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 16 H -0.27 -9.24 7.11 99.48 0.71 -8.53 16 17 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 18 C -0.24 -11.39 9.73 22.45 0.22 -11.17 16 19 C -0.04 -2.04 9.63 22.27 0.21 -1.83 16 20 N -0.34 -15.50 12.04 -50.99 -0.61 -16.12 16 21 N -0.35 -14.44 11.36 -58.13 -0.66 -15.10 16 22 C 0.34 11.42 6.93 260.20 1.80 13.23 16 23 N -0.44 -10.99 4.72 -705.26 -3.33 -14.32 16 24 C 0.02 0.31 5.51 86.31 0.48 0.79 16 25 C 0.07 1.00 7.01 72.01 0.50 1.51 16 26 O -0.40 -7.14 10.83 -148.98 -1.61 -8.75 16 27 C 0.07 1.13 7.01 72.02 0.50 1.63 16 28 C 0.04 0.80 5.08 86.32 0.44 1.24 16 29 H 0.11 2.47 7.01 -2.91 -0.02 2.45 16 30 H 0.12 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.10 2.86 5.49 -2.38 -0.01 2.84 16 33 H 0.12 2.36 6.02 -2.39 -0.01 2.35 16 34 H 0.13 4.85 2.03 -2.91 -0.01 4.84 16 35 H 0.12 5.61 6.39 -2.91 -0.02 5.59 16 36 H 0.29 12.59 8.30 -92.71 -0.77 11.82 16 37 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.11 4.76 7.98 -2.91 -0.02 4.74 16 39 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.10 1.69 6.01 -2.39 -0.01 1.67 16 41 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.09 2.09 8.13 -2.39 -0.02 2.07 16 46 H 0.05 1.24 8.02 -2.39 -0.02 1.22 16 Total: -1.00 -64.58 371.12 3.21 -61.37 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 1.01 Total: 33.83 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 7.62 Total: -21.75 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -5.83 Total: -101.95 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -1.61 Total: -8.75 kcal Atomic # 14 Polarization: 35.22 SS G_CDS: 2.03 Total: 37.25 kcal Total: -64.58 3.21 -61.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262983505.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.868 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds