Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 C 1.53000 * 109.47252 * 239.99673 * 2 1 3 5 5 O 1.45208 * 109.46853 * 119.99898 * 2 1 3 6 6 C 1.34226 * 116.99895 * 59.99730 * 5 2 1 7 7 O 1.20820 * 119.99974 * 0.02562 * 6 5 2 8 8 C 1.50705 * 119.99622 * 179.97438 * 6 5 2 9 9 H 1.09005 * 109.47013 * 60.00621 * 8 6 5 10 10 C 1.50694 * 109.46772 * 180.02562 * 8 6 5 11 11 O 1.20824 * 120.00470 * 0.02562 * 10 8 6 12 12 O 1.34236 * 119.99457 * 180.02562 * 10 8 6 13 13 C 1.45208 * 116.99411 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46768 * 179.97438 * 13 12 10 15 15 C 1.50705 * 113.56340 * 51.06681 * 14 13 12 16 16 H 1.08001 * 119.99758 * 249.38446 * 15 14 13 17 17 C 1.37871 * 120.00039 * 69.39275 * 15 14 13 18 18 N 1.31517 * 120.00258 * 5.63982 * 17 15 14 19 19 Si 1.86802 * 120.00009 * 185.63741 * 17 15 14 20 20 H 1.48499 * 109.46886 * 90.00039 * 19 17 15 21 21 H 1.48501 * 109.47145 * 210.00207 * 19 17 15 22 22 H 1.48496 * 109.47257 * 330.00196 * 19 17 15 23 23 C 1.53361 * 114.56501 * 185.34211 * 14 13 12 24 24 O 1.43349 * 88.44712 * 86.60678 * 23 14 13 25 25 C 1.43358 * 88.32111 * 28.15122 * 24 23 14 26 26 C 1.52997 * 109.47335 * 300.00381 * 8 6 5 27 27 C 1.53006 * 117.49841 * 128.74421 * 26 8 6 28 28 C 1.53009 * 117.49762 * 60.08855 * 26 8 6 29 29 H 1.09001 * 109.47454 * 300.00136 * 1 2 3 30 30 H 1.09004 * 109.47331 * 60.00257 * 1 2 3 31 31 H 1.09000 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47083 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46798 * 300.00070 * 3 2 1 34 34 H 1.09001 * 109.47058 * 59.99621 * 3 2 1 35 35 H 1.09000 * 109.47077 * 300.00381 * 4 2 1 36 36 H 1.08994 * 109.46876 * 59.99904 * 4 2 1 37 37 H 1.08992 * 109.46897 * 180.02562 * 4 2 1 38 38 H 1.08995 * 109.47016 * 59.99741 * 13 12 10 39 39 H 1.08997 * 109.47027 * 299.99673 * 13 12 10 40 40 H 0.96998 * 120.00196 * 179.97438 * 18 17 15 41 41 H 1.08994 * 113.39391 * 331.70646 * 23 14 13 42 42 H 1.08997 * 113.39002 * 201.50550 * 23 14 13 43 43 H 1.08994 * 113.39012 * 86.74525 * 25 24 23 44 44 H 1.08997 * 113.38722 * 216.90513 * 25 24 23 45 45 H 1.08992 * 115.55275 * 274.41851 * 26 8 6 46 46 H 1.08999 * 117.49686 * 0.02562 * 27 26 8 47 47 H 1.08999 * 117.49019 * 145.02267 * 27 26 8 48 48 H 1.08999 * 117.49579 * 214.97967 * 28 26 8 49 49 H 1.09000 * 117.49893 * 359.96941 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6532 -1.9684 1.3380 7 8 0.9565 -2.5027 0.5079 8 6 2.1181 -2.7437 2.5438 9 1 1.7546 -2.2587 3.4498 10 6 1.5796 -4.1494 2.4752 11 8 0.8896 -4.4873 1.5428 12 8 1.8667 -5.0263 3.4503 13 6 1.3145 -6.3628 3.3183 14 6 1.7467 -7.2135 4.5144 15 6 1.4761 -6.5621 5.8461 16 1 2.2984 -6.2181 6.4560 17 6 0.1789 -6.4056 6.2860 18 7 -0.8158 -6.9224 5.5980 19 14 -0.1661 -5.4595 7.8594 20 1 -0.3642 -4.0229 7.5398 21 1 -1.3923 -5.9974 8.5017 22 1 0.9838 -5.6061 8.7874 23 6 1.3342 -8.6882 4.4302 24 8 2.5381 -8.9426 3.6948 25 6 3.1411 -7.8383 4.3818 26 6 3.6474 -2.7843 2.5655 27 6 4.3469 -2.3655 3.8602 28 6 4.3887 -1.4476 2.6360 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1391 37 1 3.1299 -0.7217 -1.2489 38 1 1.6805 -6.8178 2.3980 39 1 0.2265 -6.3050 3.2873 40 1 -1.7284 -6.8125 5.9077 41 1 0.4281 -8.8514 3.8469 42 1 1.3059 -9.1856 5.3996 43 1 3.5845 -8.1138 5.3385 44 1 3.8187 -7.2574 3.7561 45 1 4.1048 -3.5832 1.9821 46 1 3.7176 -2.0615 4.6966 47 1 5.2647 -2.8889 4.1282 48 1 5.3339 -1.3675 2.0991 49 1 3.7868 -0.5393 2.6663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263547905.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = -152.371783 kcal Electronic energy + Delta-G solvation = -31690.948502 eV Core-core repulsion = 27393.253061 eV Total energy + Delta-G solvation = -4297.695441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.181 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14481 -39.95961 -39.32489 -37.44512 -36.89468 -35.48768 -34.09832 -32.99997 -30.73357 -29.73018 -27.58696 -27.53339 -25.64359 -25.07573 -24.44188 -23.29993 -22.22036 -21.59559 -20.40194 -19.40403 -18.67423 -17.71106 -16.93132 -16.51109 -16.34769 -16.24696 -15.72629 -15.53613 -15.03462 -14.96548 -14.64066 -14.43382 -14.18629 -14.00949 -13.87774 -13.75374 -13.58523 -12.68836 -12.46865 -12.33698 -12.27448 -12.07594 -12.04827 -11.88204 -11.69332 -11.48881 -11.41567 -11.38826 -11.27398 -11.08490 -10.93431 -10.70867 -10.58350 -10.52164 -10.48067 -10.41178 -9.92341 -9.77785 -9.39446 -9.03230 -8.95471 -8.71023 -8.49546 -6.17879 -4.21839 2.23905 2.32503 2.75247 3.23487 3.31397 3.32821 3.35886 3.83553 4.32263 4.47435 4.52714 4.56778 4.60422 4.74079 4.81129 4.91952 5.06957 5.13200 5.14404 5.28457 5.31049 5.36133 5.41552 5.50766 5.55856 5.64329 5.68786 5.71733 5.80385 5.84724 5.88888 6.04334 6.07860 6.12941 6.14793 6.18795 6.26460 6.35374 6.46958 6.49539 6.65904 6.83018 7.07604 7.13257 7.29247 7.36986 7.77861 7.89207 8.12867 8.45945 8.75700 9.43574 10.91368 Molecular weight = 340.18amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003405 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.656319 B = 8220.246220 C = 8560.923559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.346 6.346 6 C 0.470 3.530 7 O -0.457 6.457 8 C -0.046 4.046 9 H 0.138 0.862 10 C 0.458 3.542 11 O -0.481 6.481 12 O -0.322 6.322 13 C 0.109 3.891 14 C 0.024 3.976 15 C -0.504 4.504 16 H 0.066 0.934 17 C 0.070 3.930 18 N -0.888 5.888 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.059 3.941 24 O -0.403 6.403 25 C 0.031 3.969 26 C -0.151 4.151 27 C -0.156 4.156 28 C -0.167 4.167 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.264 0.736 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.114 0.886 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.096 0.904 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.745 15.433 -7.527 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.082 3.918 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.264 6.264 6 C 0.310 3.690 7 O -0.340 6.340 8 C -0.066 4.066 9 H 0.156 0.844 10 C 0.298 3.702 11 O -0.367 6.367 12 O -0.237 6.237 13 C 0.036 3.964 14 C 0.023 3.977 15 C -0.542 4.542 16 H 0.084 0.916 17 C -0.133 4.133 18 N -0.525 5.525 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.017 4.017 24 O -0.323 6.323 25 C -0.046 4.046 26 C -0.169 4.169 27 C -0.193 4.193 28 C -0.204 4.204 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.132 0.868 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.114 0.886 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.171 14.909 -8.290 18.505 hybrid contribution -0.650 0.502 0.806 1.151 sum 6.521 15.412 -7.484 18.332 Atomic orbital electron populations 1.22511 0.94132 1.05040 1.02578 1.22150 0.94358 0.92110 0.83201 1.21837 1.02170 0.92637 1.02930 1.22486 1.01647 1.03396 0.96522 1.86527 1.69922 1.24907 1.45043 1.22628 0.78334 0.80902 0.87113 1.90727 1.32780 1.69021 1.41474 1.20123 0.96907 0.91709 0.97838 0.84409 1.22356 0.79099 0.87346 0.81378 1.90766 1.34400 1.78374 1.33199 1.86488 1.68531 1.23629 1.45096 1.22825 0.99353 0.76851 0.97388 1.20386 0.90775 0.92059 0.94493 1.20725 0.92472 1.39760 1.01224 0.91569 1.24954 0.96133 0.95000 0.97244 1.69912 0.99503 1.43674 1.39407 0.86562 0.77852 0.80271 0.83179 1.20582 1.21275 1.19697 1.23618 0.87267 0.95766 0.95074 1.89639 1.28918 1.54033 1.59668 1.23821 0.97994 0.87190 0.95607 1.21825 0.89257 1.00939 1.04885 1.23090 1.02538 1.02235 0.91428 1.23130 1.01776 0.93746 1.01730 0.91998 0.91170 0.89589 0.91445 0.90515 0.91506 0.89638 0.91248 0.91978 0.93694 0.90004 0.92593 0.91001 0.90736 0.91128 0.91925 0.86778 0.87945 0.88075 0.88577 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.05 8.37 37.16 0.31 -1.74 16 2 C 0.12 1.25 1.13 -90.62 -0.10 1.15 16 3 C -0.14 -1.04 8.85 37.16 0.33 -0.72 16 4 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 5 O -0.35 -4.29 7.83 -39.25 -0.31 -4.60 16 6 C 0.47 7.22 6.54 36.01 0.24 7.46 16 7 O -0.46 -8.41 9.69 -26.85 -0.26 -8.67 16 8 C -0.05 -0.70 2.90 -92.93 -0.27 -0.97 16 9 H 0.14 1.87 7.90 -51.93 -0.41 1.46 16 10 C 0.46 9.21 7.23 36.00 0.26 9.47 16 11 O -0.48 -11.13 13.94 -26.86 -0.37 -11.50 16 12 O -0.32 -7.03 9.71 -39.27 -0.38 -7.41 16 13 C 0.11 2.58 4.83 37.16 0.18 2.76 16 14 C 0.02 0.56 0.76 -155.28 -0.12 0.44 16 15 C -0.50 -12.76 8.01 -34.44 -0.28 -13.04 16 16 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 17 C 0.07 1.80 5.36 -17.82 -0.10 1.70 16 18 N -0.89 -23.86 12.09 55.43 0.67 -23.19 16 19 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 C 0.06 1.39 7.20 24.60 0.18 1.57 16 24 O -0.40 -9.19 12.57 -35.23 -0.44 -9.63 16 25 C 0.03 0.65 7.89 24.60 0.19 0.85 16 26 C -0.15 -1.91 5.07 -90.61 -0.46 -2.37 16 27 C -0.16 -1.69 10.18 -26.69 -0.27 -1.96 16 28 C -0.17 -1.64 9.45 -26.69 -0.25 -1.90 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.09 1.21 5.89 -51.93 -0.31 0.91 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.17 5.89 -51.93 -0.31 0.87 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.04 1.04 7.96 -51.93 -0.41 0.63 16 39 H 0.08 2.14 7.58 -51.93 -0.39 1.75 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 41 H 0.07 1.71 8.13 -51.93 -0.42 1.29 16 42 H 0.07 1.74 8.10 -51.93 -0.42 1.32 16 43 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 44 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 45 H 0.11 1.50 8.11 -51.93 -0.42 1.08 16 46 H 0.10 1.09 8.05 -51.93 -0.42 0.68 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.11 1.03 6.85 -51.93 -0.36 0.68 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -30.24 398.91 -8.01 -38.25 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.06 Total: 4.52 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 0.15 Total: 1.07 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.67 Total: -23.19 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -1.77 Total: -41.81 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.24 -8.01 -38.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547905.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.123 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds