Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47142 * 2 1 4 4 C 1.53000 * 109.47252 * 239.99673 * 2 1 3 5 5 O 1.45208 * 109.46853 * 119.99898 * 2 1 3 6 6 C 1.34226 * 116.99895 * 59.99730 * 5 2 1 7 7 O 1.20820 * 119.99974 * 0.02562 * 6 5 2 8 8 C 1.50705 * 119.99622 * 179.97438 * 6 5 2 9 9 H 1.09005 * 109.47013 * 60.00621 * 8 6 5 10 10 C 1.50694 * 109.46772 * 180.02562 * 8 6 5 11 11 O 1.20824 * 120.00470 * 0.02562 * 10 8 6 12 12 O 1.34236 * 119.99457 * 180.02562 * 10 8 6 13 13 C 1.45208 * 116.99411 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.46768 * 179.97438 * 13 12 10 15 15 C 1.50705 * 113.56340 * 51.06681 * 14 13 12 16 16 H 1.08001 * 119.99758 * 249.38446 * 15 14 13 17 17 C 1.37871 * 120.00039 * 69.39275 * 15 14 13 18 18 N 1.31517 * 120.00258 * 5.63982 * 17 15 14 19 19 Si 1.86802 * 120.00009 * 185.63741 * 17 15 14 20 20 H 1.48499 * 109.46886 * 90.00039 * 19 17 15 21 21 H 1.48501 * 109.47145 * 210.00207 * 19 17 15 22 22 H 1.48496 * 109.47257 * 330.00196 * 19 17 15 23 23 C 1.53361 * 114.56501 * 185.34211 * 14 13 12 24 24 O 1.43349 * 88.44712 * 86.60678 * 23 14 13 25 25 C 1.43358 * 88.32111 * 28.15122 * 24 23 14 26 26 C 1.52997 * 109.47335 * 300.00381 * 8 6 5 27 27 C 1.53006 * 117.49841 * 128.74421 * 26 8 6 28 28 C 1.53009 * 117.49762 * 60.08855 * 26 8 6 29 29 H 1.09001 * 109.47454 * 300.00136 * 1 2 3 30 30 H 1.09004 * 109.47331 * 60.00257 * 1 2 3 31 31 H 1.09000 * 109.47391 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47083 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46798 * 300.00070 * 3 2 1 34 34 H 1.09001 * 109.47058 * 59.99621 * 3 2 1 35 35 H 1.09000 * 109.47077 * 300.00381 * 4 2 1 36 36 H 1.08994 * 109.46876 * 59.99904 * 4 2 1 37 37 H 1.08992 * 109.46897 * 180.02562 * 4 2 1 38 38 H 1.08995 * 109.47016 * 59.99741 * 13 12 10 39 39 H 1.08997 * 109.47027 * 299.99673 * 13 12 10 40 40 H 0.96998 * 120.00196 * 179.97438 * 18 17 15 41 41 H 1.08994 * 113.39391 * 331.70646 * 23 14 13 42 42 H 1.08997 * 113.39002 * 201.50550 * 23 14 13 43 43 H 1.08994 * 113.39012 * 86.74525 * 25 24 23 44 44 H 1.08997 * 113.38722 * 216.90513 * 25 24 23 45 45 H 1.08992 * 115.55275 * 274.41851 * 26 8 6 46 46 H 1.08999 * 117.49686 * 0.02562 * 27 26 8 47 47 H 1.08999 * 117.49019 * 145.02267 * 27 26 8 48 48 H 1.08999 * 117.49579 * 214.97967 * 28 26 8 49 49 H 1.09000 * 117.49893 * 359.96941 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1857 6 6 1.6532 -1.9684 1.3380 7 8 0.9565 -2.5027 0.5079 8 6 2.1181 -2.7437 2.5438 9 1 1.7546 -2.2587 3.4498 10 6 1.5796 -4.1494 2.4752 11 8 0.8896 -4.4873 1.5428 12 8 1.8667 -5.0263 3.4503 13 6 1.3145 -6.3628 3.3183 14 6 1.7467 -7.2135 4.5144 15 6 1.4761 -6.5621 5.8461 16 1 2.2984 -6.2181 6.4560 17 6 0.1789 -6.4056 6.2860 18 7 -0.8158 -6.9224 5.5980 19 14 -0.1661 -5.4595 7.8594 20 1 -0.3642 -4.0229 7.5398 21 1 -1.3923 -5.9974 8.5017 22 1 0.9838 -5.6061 8.7874 23 6 1.3342 -8.6882 4.4302 24 8 2.5381 -8.9426 3.6948 25 6 3.1411 -7.8383 4.3818 26 6 3.6474 -2.7843 2.5655 27 6 4.3469 -2.3655 3.8602 28 6 4.3887 -1.4476 2.6360 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1391 37 1 3.1299 -0.7217 -1.2489 38 1 1.6805 -6.8178 2.3980 39 1 0.2265 -6.3050 3.2873 40 1 -1.7284 -6.8125 5.9077 41 1 0.4281 -8.8514 3.8469 42 1 1.3059 -9.1856 5.3996 43 1 3.5845 -8.1138 5.3385 44 1 3.8187 -7.2574 3.7561 45 1 4.1048 -3.5832 1.9821 46 1 3.7176 -2.0615 4.6966 47 1 5.2647 -2.8889 4.1282 48 1 5.3339 -1.3675 2.0991 49 1 3.7868 -0.5393 2.6663 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263547905.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = -167.693694 kcal Electronic energy + Delta-G solvation = -31691.612909 eV Core-core repulsion = 27393.253061 eV Total energy + Delta-G solvation = -4298.359849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.181 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.39301 -41.67012 -40.92002 -38.49697 -38.06162 -37.16672 -35.01229 -34.94445 -32.18708 -31.40137 -28.39773 -28.26978 -27.49608 -26.88902 -26.33815 -24.48599 -23.05336 -22.78209 -21.66206 -20.64050 -20.43795 -19.07523 -18.73454 -17.75821 -17.65088 -17.52167 -17.19855 -17.10244 -16.68607 -16.58777 -16.02226 -15.83715 -15.69009 -15.41484 -15.03897 -14.84373 -14.59780 -14.13081 -14.00208 -13.66278 -13.34092 -13.21832 -13.16021 -12.96800 -12.93489 -12.84238 -12.77572 -12.74473 -12.54383 -12.40909 -12.32022 -12.27257 -12.18488 -11.79328 -11.64095 -11.42508 -11.38446 -11.08824 -10.91211 -10.84715 -10.65576 -10.58420 -10.40744 -8.14890 -6.24315 1.03212 1.09442 1.18872 1.45166 1.47759 1.56413 1.98598 2.44473 2.88278 3.15862 3.28895 3.37965 3.46849 3.64552 3.75052 3.79187 3.86982 3.95421 3.95841 4.08073 4.18487 4.22911 4.38046 4.45719 4.57137 4.58720 4.61036 4.66268 4.75423 4.76600 4.82742 4.86965 4.90538 4.93988 4.95787 5.04478 5.13764 5.21636 5.22652 5.25663 5.30863 5.35444 5.38404 5.41158 5.48601 5.61030 5.77342 6.19296 6.69015 6.76955 6.83497 7.43871 8.93512 Molecular weight = 340.18amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003405 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.656319 B = 8220.246220 C = 8560.923559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 C -0.132 4.132 4 C -0.181 4.181 5 O -0.334 6.334 6 C 0.474 3.526 7 O -0.494 6.494 8 C -0.039 4.039 9 H 0.157 0.843 10 C 0.454 3.546 11 O -0.518 6.518 12 O -0.324 6.324 13 C 0.121 3.879 14 C 0.010 3.990 15 C -0.509 4.509 16 H 0.071 0.929 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.950 3.050 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.260 1.260 23 C 0.064 3.936 24 O -0.408 6.408 25 C 0.040 3.960 26 C -0.176 4.176 27 C -0.151 4.151 28 C -0.140 4.140 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.262 0.738 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.115 0.885 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.869 18.234 -6.765 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.072 3.928 3 C -0.189 4.189 4 C -0.238 4.238 5 O -0.251 6.251 6 C 0.315 3.685 7 O -0.380 6.380 8 C -0.058 4.058 9 H 0.174 0.826 10 C 0.296 3.704 11 O -0.406 6.406 12 O -0.239 6.239 13 C 0.047 3.953 14 C 0.009 3.991 15 C -0.547 4.547 16 H 0.089 0.911 17 C -0.175 4.175 18 N -0.555 5.555 19 Si 0.776 3.224 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.184 1.184 23 C -0.013 4.013 24 O -0.328 6.328 25 C -0.036 4.036 26 C -0.194 4.194 27 C -0.188 4.188 28 C -0.176 4.176 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.130 0.870 48 H 0.134 0.866 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.333 17.734 -7.515 21.403 hybrid contribution -1.313 -0.338 0.487 1.441 sum 8.019 17.396 -7.028 20.404 Atomic orbital electron populations 1.22496 0.94720 1.02992 1.03968 1.22537 0.94163 0.93748 0.82328 1.21857 1.02811 0.89888 1.04294 1.22456 1.02159 1.01529 0.97655 1.86518 1.69388 1.23196 1.46015 1.22671 0.77569 0.81682 0.86575 1.90741 1.34449 1.70010 1.42769 1.20179 0.98780 0.88219 0.98657 0.82559 1.23350 0.78115 0.88766 0.80171 1.90750 1.36075 1.79335 1.34456 1.86490 1.68442 1.23099 1.45912 1.22492 0.97265 0.78147 0.97407 1.20468 0.92773 0.91918 0.93922 1.20968 0.92598 1.39414 1.01687 0.91125 1.25645 0.96070 0.95763 0.99988 1.70039 0.99621 1.44926 1.40889 0.85660 0.77768 0.78844 0.80086 1.20469 1.21654 1.18367 1.23503 0.87097 0.95905 0.94785 1.89630 1.28687 1.54575 1.59915 1.23861 0.96906 0.86247 0.96623 1.21796 0.87289 1.03155 1.07196 1.23210 1.02447 1.02104 0.91064 1.23221 1.01718 0.92258 1.00427 0.91499 0.88922 0.93261 0.90429 0.88392 0.90924 0.93254 0.89076 0.91056 0.94062 0.93442 0.92948 0.92372 0.90748 0.89502 0.90115 0.87746 0.87691 0.87045 0.86647 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 8.37 71.98 0.60 -3.34 16 2 C 0.11 2.11 1.13 -10.79 -0.01 2.10 16 3 C -0.13 -1.52 8.85 71.98 0.64 -0.88 16 4 C -0.18 -3.68 8.37 71.98 0.60 -3.08 16 5 O -0.33 -7.81 7.83 -51.38 -0.40 -8.21 16 6 C 0.47 14.64 6.54 71.24 0.47 15.10 16 7 O -0.49 -19.05 9.69 29.74 0.29 -18.76 16 8 C -0.04 -1.17 2.90 -12.29 -0.04 -1.21 16 9 H 0.16 4.09 7.90 -2.38 -0.02 4.07 16 10 C 0.45 18.83 7.23 71.23 0.51 19.35 16 11 O -0.52 -25.29 13.94 29.72 0.41 -24.87 16 12 O -0.32 -14.42 9.71 -51.47 -0.50 -14.92 16 13 C 0.12 5.92 4.83 71.98 0.35 6.26 16 14 C 0.01 0.47 0.76 -52.68 -0.04 0.43 16 15 C -0.51 -25.57 8.01 25.60 0.20 -25.37 16 16 H 0.07 3.43 7.82 -2.91 -0.02 3.40 16 17 C 0.03 1.31 5.36 84.65 0.45 1.76 16 18 N -0.92 -50.33 12.09 21.45 0.26 -50.07 16 19 Si 0.95 41.00 29.54 68.60 2.03 43.03 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 23 C 0.06 3.04 7.20 63.85 0.46 3.50 16 24 O -0.41 -18.49 12.57 -148.98 -1.87 -20.37 16 25 C 0.04 1.66 7.89 63.85 0.50 2.16 16 26 C -0.18 -4.23 5.07 -10.79 -0.05 -4.28 16 27 C -0.15 -2.87 10.18 30.62 0.31 -2.55 16 28 C -0.14 -2.31 9.45 30.62 0.29 -2.02 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.44 5.89 -2.39 -0.01 1.43 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 1.39 5.89 -2.39 -0.01 1.38 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 2.00 7.96 -2.39 -0.02 1.98 16 39 H 0.05 2.62 7.58 -2.39 -0.02 2.61 16 40 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.06 2.88 8.13 -2.39 -0.02 2.86 16 42 H 0.07 3.50 8.10 -2.39 -0.02 3.48 16 43 H 0.09 3.33 8.10 -2.39 -0.02 3.31 16 44 H 0.08 3.04 8.13 -2.39 -0.02 3.02 16 45 H 0.10 2.70 8.11 -2.39 -0.02 2.68 16 46 H 0.10 1.95 8.05 -2.39 -0.02 1.93 16 47 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.11 1.77 6.85 -2.39 -0.02 1.76 16 Total: -1.00 -67.52 398.91 6.40 -61.12 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.94 Total: 25.13 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.25 Total: 7.93 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.26 Total: -50.07 kcal Atomic # 8 Polarization: -85.06 SS G_CDS: -2.07 Total: -87.13 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -67.52 6.40 -61.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263547905.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.579 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds