Wall clock time and date at job start Sat Apr 11 2020 06:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47142 * 2 1 4 4 N 1.46901 * 109.46865 * 179.97438 * 3 2 1 5 5 C 1.46897 * 111.00327 * 59.16164 * 4 3 2 6 6 C 1.53001 * 109.46991 * 66.04350 * 5 4 3 7 7 N 1.46500 * 109.46898 * 180.02562 * 6 5 4 8 8 C 1.34783 * 119.99952 * 179.97438 * 7 6 5 9 9 O 1.21695 * 119.99847 * 0.02562 * 8 7 6 10 10 C 1.46655 * 120.00109 * 180.02562 * 8 7 6 11 11 C 1.37926 * 126.21261 * 179.69201 * 10 8 7 12 12 C 1.39933 * 107.10508 * 179.90000 * 11 10 8 13 13 F 1.35103 * 126.07395 * 180.13277 * 12 11 10 14 14 C 1.35567 * 107.84423 * 0.36017 * 12 11 10 15 15 N 1.35745 * 108.83155 * 359.77786 * 14 12 11 16 16 H 0.96998 * 125.67530 * 180.02562 * 15 14 12 17 17 C 1.46900 * 111.00061 * 295.20746 * 4 3 2 18 18 C 1.50709 * 109.47108 * 288.24511 * 17 4 3 19 19 O 1.21295 * 119.99707 * 354.29658 * 18 17 4 20 20 N 1.34774 * 119.99718 * 174.30279 * 18 17 4 21 21 C 1.37105 * 119.99577 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99536 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99915 * 179.97438 * 21 20 18 24 24 N 1.31413 * 119.99909 * 179.97438 * 23 21 20 25 25 Si 1.86792 * 119.99989 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47349 * 90.00141 * 25 23 21 27 27 H 1.48500 * 109.47149 * 210.00093 * 25 23 21 28 28 H 1.48500 * 109.47495 * 329.99954 * 25 23 21 29 29 H 1.09003 * 109.47108 * 59.99588 * 1 2 3 30 30 H 1.08997 * 109.47146 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47457 * 300.00220 * 1 2 3 32 32 H 1.09001 * 109.47022 * 240.00090 * 2 1 3 33 33 H 1.09005 * 109.46984 * 119.99891 * 2 1 3 34 34 H 1.09002 * 109.46877 * 59.93398 * 3 2 1 35 35 H 1.08994 * 109.46748 * 299.93314 * 3 2 1 36 36 H 1.09006 * 109.47006 * 306.04702 * 5 4 3 37 37 H 1.08997 * 109.47474 * 186.04896 * 5 4 3 38 38 H 1.08992 * 109.47037 * 60.00435 * 6 5 4 39 39 H 1.09001 * 109.47208 * 299.99843 * 6 5 4 40 40 H 0.97004 * 120.00420 * 0.02562 * 7 6 5 41 41 H 1.07997 * 126.44964 * 0.02562 * 11 10 8 42 42 H 1.07997 * 125.58296 * 179.80778 * 14 12 11 43 43 H 1.09001 * 109.47527 * 48.23953 * 17 4 3 44 44 H 1.08994 * 109.47254 * 168.24720 * 17 4 3 45 45 H 0.96994 * 120.00805 * 359.97438 * 20 18 17 46 46 H 0.97003 * 119.99888 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.7393 -1.1765 6 6 3.6725 1.5193 -2.4416 7 7 4.1976 0.8177 -3.6156 8 6 3.9967 1.3235 -4.8487 9 8 3.3795 2.3632 -4.9867 10 6 4.5217 0.6208 -6.0240 11 6 4.3868 1.0174 -7.3381 12 6 5.0378 0.0612 -8.1255 13 9 5.1420 0.0770 -9.4724 14 6 5.5411 -0.8864 -7.2969 15 7 5.2335 -0.5570 -6.0164 16 1 5.4756 -1.0666 -5.2274 17 6 4.0349 0.8585 1.2418 18 6 3.7992 1.8120 2.3848 19 8 3.3422 2.9149 2.1702 20 7 4.0963 1.4393 3.6454 21 6 3.8824 2.3069 4.6852 22 1 3.4761 3.2892 4.4940 23 6 4.1882 1.9224 5.9850 24 7 3.9836 2.7542 6.9816 25 14 4.8901 0.2233 6.3157 26 1 6.3725 0.2782 6.2478 27 1 4.4729 -0.2302 7.6668 28 1 4.3828 -0.7291 5.2955 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6757 1.9567 0.8894 35 1 1.6776 1.9559 -0.8906 36 1 3.6016 -0.2592 -1.2280 37 1 5.1202 0.6601 -1.0974 38 1 4.1069 2.5176 -2.3902 39 1 2.5883 1.5983 -2.5208 40 1 4.6892 -0.0113 -3.5056 41 1 3.8766 1.9008 -7.6926 42 1 6.0961 -1.7601 -7.6050 43 1 3.5261 -0.0839 1.4441 44 1 5.1044 0.6782 1.1338 45 1 4.4615 0.5572 3.8172 46 1 4.1967 2.4857 7.8890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266566719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:59 Heat of formation + Delta-G solvation = -58.039508 kcal Electronic energy + Delta-G solvation = -28709.448546 eV Core-core repulsion = 24356.968857 eV Total energy + Delta-G solvation = -4352.479689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.91768 -41.78663 -39.66979 -39.01877 -37.39896 -35.17753 -33.94306 -32.82624 -31.68949 -31.40971 -30.57398 -29.04689 -27.36120 -25.47607 -24.16621 -23.11297 -22.72074 -21.22538 -20.83775 -20.46314 -19.39940 -19.18484 -18.20626 -16.73313 -16.47811 -16.37939 -16.07346 -15.98121 -15.81600 -15.62650 -15.23806 -15.01154 -14.89030 -14.39986 -14.10494 -13.95698 -13.88079 -13.69941 -13.55811 -13.28494 -13.16228 -12.78653 -12.34016 -12.16549 -12.00725 -11.74553 -11.70819 -11.60845 -11.44019 -11.26801 -11.09926 -10.63216 -10.56651 -10.41707 -9.99752 -9.57020 -9.52051 -9.40130 -8.79633 -8.63545 -8.19666 -8.02142 -6.32685 -3.84107 0.83996 1.93683 2.35292 2.56919 2.90840 2.98409 3.03270 3.11981 3.72163 3.83691 4.05726 4.07930 4.35443 4.44319 4.61119 4.70398 4.77805 4.82575 4.94121 5.04759 5.05919 5.18828 5.19800 5.29644 5.40843 5.47605 5.52585 5.64114 5.70763 5.73671 5.84376 5.86673 5.88108 5.91066 6.00567 6.11246 6.17256 6.31942 6.42866 6.62082 6.98085 7.05668 7.14878 7.56474 7.74038 8.12944 8.58710 8.94063 9.40773 9.82193 10.80524 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.020673 B = 0.001865 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.071900 B =15013.638833 C =15387.012628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.166 4.166 3 C 0.050 3.950 4 N -0.506 5.506 5 C 0.039 3.961 6 C 0.122 3.878 7 N -0.727 5.727 8 C 0.588 3.412 9 O -0.516 6.516 10 C -0.025 4.025 11 C -0.129 4.129 12 C 0.003 3.997 13 F -0.126 7.126 14 C 0.001 3.999 15 N -0.528 5.528 16 H 0.425 0.575 17 C 0.040 3.960 18 C 0.453 3.547 19 O -0.555 6.555 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.271 1.271 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.393 0.607 41 H 0.161 0.839 42 H 0.184 0.816 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.369 0.631 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 -14.947 -24.865 29.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C -0.078 4.078 4 N -0.229 5.229 5 C -0.089 4.089 6 C -0.001 4.001 7 N -0.379 5.379 8 C 0.374 3.626 9 O -0.391 6.391 10 C -0.139 4.139 11 C -0.156 4.156 12 C -0.022 4.022 13 F -0.105 7.105 14 C -0.136 4.136 15 N -0.125 5.125 16 H 0.264 0.736 17 C -0.092 4.092 18 C 0.238 3.762 19 O -0.436 6.436 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.196 1.196 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.226 0.774 41 H 0.179 0.821 42 H 0.201 0.799 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.201 0.799 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.342 -12.903 -24.743 28.003 hybrid contribution 0.812 -3.004 0.698 3.189 sum 3.154 -15.907 -24.045 29.002 Atomic orbital electron populations 1.21650 0.95251 1.01320 1.02207 1.22222 0.97096 0.99603 1.01541 1.22413 0.86117 0.94827 1.04443 1.61647 1.08205 1.53041 0.99966 1.22292 1.00619 0.95607 0.90413 1.21405 0.99907 0.96730 0.82068 1.45788 1.58204 1.27598 1.06300 1.16870 0.79861 0.84427 0.81402 1.90908 1.40355 1.22411 1.85419 1.20326 1.07016 0.91213 0.95321 1.21367 1.03048 1.01102 0.90078 1.16494 1.08482 0.99307 0.77952 1.91467 1.95279 1.96529 1.27227 1.21785 1.06604 1.02230 0.82945 1.41718 1.42889 1.19776 1.08158 0.73587 1.21965 1.00709 0.96218 0.90269 1.19608 0.84628 0.88920 0.83023 1.90573 1.47427 1.22038 1.83533 1.42212 1.58938 1.15686 1.06453 1.19423 1.40600 0.99030 0.84164 0.86259 1.25033 0.97860 0.97975 0.95334 1.69622 1.47475 1.35365 0.99692 0.86681 0.79968 0.84032 0.78718 1.19654 1.20223 1.19634 0.92751 0.93114 0.92212 0.92318 0.91795 0.88564 0.90638 0.93913 0.90313 0.89691 0.90671 0.77440 0.82104 0.79922 0.92786 0.89303 0.79854 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 37.16 0.37 -1.19 16 2 C -0.17 -1.88 5.29 -26.73 -0.14 -2.02 16 3 C 0.05 0.70 4.80 -3.82 -0.02 0.68 16 4 N -0.51 -7.16 4.31 -236.07 -1.02 -8.18 16 5 C 0.04 0.38 4.81 -3.83 -0.02 0.36 16 6 C 0.12 1.23 5.60 -4.04 -0.02 1.21 16 7 N -0.73 -5.58 5.55 -61.63 -0.34 -5.92 16 8 C 0.59 6.03 7.79 -12.86 -0.10 5.93 16 9 O -0.52 -7.53 16.88 5.19 0.09 -7.44 16 10 C -0.02 -0.20 7.05 -81.99 -0.58 -0.78 16 11 C -0.13 -1.18 10.66 -39.06 -0.42 -1.60 16 12 C 0.00 0.03 7.98 -39.90 -0.32 -0.29 16 13 F -0.13 -1.18 17.32 2.25 0.04 -1.14 16 14 C 0.00 0.00 11.90 -16.77 -0.20 -0.19 16 15 N -0.53 -2.36 6.00 -9.32 -0.06 -2.42 16 16 H 0.43 0.41 8.19 -40.82 -0.33 0.08 16 17 C 0.04 0.61 5.34 -4.97 -0.03 0.58 16 18 C 0.45 9.84 7.36 -10.98 -0.08 9.75 16 19 O -0.55 -14.43 14.70 5.54 0.08 -14.35 16 20 N -0.59 -13.64 5.09 -10.96 -0.06 -13.70 16 21 C -0.30 -8.41 10.16 -14.93 -0.15 -8.56 16 22 H 0.12 3.80 7.39 -52.48 -0.39 3.42 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 24 N -0.88 -25.47 13.96 55.50 0.77 -24.69 16 25 Si 0.88 18.93 27.73 -169.99 -4.71 14.22 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.57 6.26 -51.93 -0.33 0.24 16 33 H 0.06 0.77 6.30 -51.93 -0.33 0.45 16 34 H 0.10 1.71 6.54 -51.93 -0.34 1.37 16 35 H 0.08 0.99 6.51 -51.93 -0.34 0.66 16 36 H 0.04 0.35 5.98 -51.93 -0.31 0.03 16 37 H 0.08 0.66 7.86 -51.93 -0.41 0.26 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.84 6.57 -51.93 -0.34 0.50 16 40 H 0.39 1.59 7.60 -40.82 -0.31 1.28 16 41 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 43 H 0.05 0.72 5.97 -51.93 -0.31 0.41 16 44 H 0.09 1.15 7.81 -51.93 -0.41 0.75 16 45 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 382.15 15.07 5.76 5.76 Total: -1.00 -35.90 382.15 -7.32 -43.22 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -6.08 Total: 9.76 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.80 Total: 4.88 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.70 Total: -54.91 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: 0.17 Total: -21.79 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.90 -7.32 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266566719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.822 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds