Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47098 * 2 1 4 4 N 1.46501 * 109.46789 * 179.97438 * 3 2 1 5 5 C 1.36949 * 119.99670 * 179.97438 * 4 3 2 6 6 H 1.07996 * 119.99535 * 0.02562 * 5 4 3 7 7 C 1.38809 * 119.99917 * 179.97438 * 5 4 3 8 8 N 1.31620 * 119.99908 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00047 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47095 * 89.99850 * 9 7 5 11 11 H 1.48499 * 109.47192 * 209.99806 * 9 7 5 12 12 H 1.48500 * 109.47100 * 329.99935 * 9 7 5 13 13 N 1.46501 * 109.47142 * 120.00031 * 2 1 3 14 14 C 1.34777 * 119.99783 * 294.93565 * 13 2 1 15 15 O 1.21550 * 119.99980 * 5.20542 * 14 13 2 16 16 C 1.47865 * 119.99911 * 185.21000 * 14 13 2 17 17 C 1.40628 * 120.25938 * 359.72498 * 16 14 13 18 18 N 1.30862 * 121.65377 * 179.68996 * 17 16 14 19 19 C 1.33592 * 121.58529 * 0.59506 * 18 17 16 20 20 C 1.40636 * 121.62633 * 179.67764 * 19 18 17 21 21 N 1.31154 * 120.03721 * 180.02562 * 20 19 18 22 22 C 1.32492 * 122.89119 * 0.02562 * 21 20 19 23 23 C 1.36314 * 121.71048 * 0.02562 * 22 21 20 24 24 C 1.40602 * 118.65072 * 359.97438 * 23 22 21 25 25 C 1.38993 * 120.25919 * 180.02562 * 16 14 13 26 26 C 1.53004 * 109.47238 * 240.00047 * 2 1 3 27 27 C 1.53000 * 117.51673 * 225.39727 * 26 2 1 28 28 C 1.52994 * 60.00201 * 107.47799 * 27 26 2 29 29 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47410 * 300.00116 * 1 2 3 31 31 H 1.08997 * 109.46908 * 60.00099 * 1 2 3 32 32 H 1.08997 * 109.47160 * 299.99746 * 3 2 1 33 33 H 1.08997 * 109.47195 * 60.00106 * 3 2 1 34 34 H 0.96998 * 120.00823 * 0.02562 * 4 3 2 35 35 H 0.97001 * 119.99493 * 180.02562 * 8 7 5 36 36 H 0.96997 * 120.00125 * 114.94155 * 13 2 1 37 37 H 1.08006 * 119.17514 * 359.97438 * 17 16 14 38 38 H 1.08001 * 119.98107 * 0.02562 * 20 19 18 39 39 H 1.08000 * 119.14752 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.67506 * 179.97438 * 23 22 21 41 41 H 1.07995 * 121.10764 * 0.02562 * 25 16 14 42 42 H 1.09000 * 115.55225 * 79.69330 * 26 2 1 43 43 H 1.08998 * 117.49970 * 214.97250 * 27 26 2 44 44 H 1.09006 * 117.50206 * 359.97438 * 27 26 2 45 45 H 1.08999 * 117.49811 * 252.51080 * 28 27 26 46 46 H 1.09001 * 117.50072 * 107.48706 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1897 2.6285 0.0002 6 1 3.6497 3.5637 -0.0002 7 6 5.5778 2.6284 0.0013 8 7 6.2359 3.7683 0.0014 9 14 6.5118 1.0107 0.0027 10 1 6.7604 0.5814 -1.3971 11 1 7.8088 1.1885 0.7036 12 1 5.7087 -0.0240 0.7025 13 7 2.0183 -0.6906 1.1962 14 6 1.7790 -0.1737 2.4176 15 8 1.0784 0.8129 2.5334 16 6 2.3687 -0.8066 3.6168 17 6 3.1753 -1.9515 3.4896 18 7 3.7157 -2.5300 4.5316 19 6 3.5179 -2.0681 5.7694 20 6 4.0928 -2.6931 6.8905 21 7 3.8775 -2.2133 8.0920 22 6 3.1281 -1.1439 8.3161 23 6 2.5249 -0.4658 7.2990 24 6 2.7101 -0.9215 5.9818 25 6 2.1250 -0.2783 4.8791 26 6 2.0400 -0.7213 -1.2493 27 6 3.1740 -1.7323 -1.0683 28 6 1.7546 -2.2199 -1.3657 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.9900 0.6025 0.0006 35 1 7.2059 3.7682 0.0018 36 1 2.5139 -1.5198 1.1091 37 1 3.3572 -2.3609 2.5069 38 1 4.7119 -3.5687 6.7619 39 1 2.9916 -0.8005 9.3309 40 1 1.9171 0.4039 7.5008 41 1 1.5053 0.5968 5.0076 42 1 2.0308 -0.1343 -2.1677 43 1 3.9109 -1.8105 -1.8676 44 1 3.5572 -1.8836 -0.0591 45 1 1.2038 -2.6920 -0.5522 46 1 1.5576 -2.6189 -2.3608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269626145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = 62.524392 kcal Electronic energy + Delta-G solvation = -29873.606949 eV Core-core repulsion = 25957.124527 eV Total energy + Delta-G solvation = -3916.482421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.46779 -41.52014 -39.43157 -38.62840 -36.43341 -35.07523 -34.80500 -33.77911 -32.81887 -31.52789 -31.49367 -27.71821 -26.67651 -25.68353 -24.67971 -23.79610 -23.68590 -23.22336 -22.55751 -20.58427 -19.99487 -19.68795 -19.25709 -18.41605 -17.65797 -16.95034 -16.53980 -16.36503 -16.22254 -16.04173 -15.77126 -15.69344 -15.45808 -15.24921 -14.91969 -14.44099 -14.36142 -14.23389 -14.10283 -13.93295 -13.76902 -13.57211 -13.39503 -13.05066 -12.85916 -12.51313 -12.36788 -12.22384 -12.10373 -11.98180 -11.85261 -11.33718 -11.17445 -11.07425 -11.05314 -10.86068 -10.54491 -10.52072 -10.05479 -9.59326 -9.25660 -8.04519 -5.35855 -1.10879 -0.69472 0.58757 1.28443 1.35014 1.38575 1.41765 1.91120 2.20693 2.44459 2.85956 2.88428 2.92133 3.22249 3.26419 3.33097 3.43155 3.50886 3.52575 3.54952 3.64576 3.82201 3.90709 3.99941 4.09768 4.21124 4.32174 4.44422 4.50732 4.53673 4.59855 4.70318 4.76408 4.82147 4.86867 4.90602 4.95053 5.04411 5.13180 5.13994 5.21123 5.29409 5.35777 5.42618 5.55937 5.74360 6.18955 6.40110 6.44032 6.79005 7.07262 7.09443 7.82888 8.06995 9.17712 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009974 B = 0.004085 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.518639 B = 6852.543887 C = 7953.466796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.206 3.794 3 C 0.142 3.858 4 N -0.744 5.744 5 C -0.229 4.229 6 H 0.048 0.952 7 C -0.064 4.064 8 N -0.986 5.986 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.301 1.301 12 H -0.249 1.249 13 N -0.705 5.705 14 C 0.567 3.433 15 O -0.551 6.551 16 C -0.183 4.183 17 C 0.157 3.843 18 N -0.464 5.464 19 C 0.063 3.937 20 C 0.156 3.844 21 N -0.480 5.480 22 C 0.070 3.930 23 C -0.129 4.129 24 C -0.099 4.099 25 C 0.007 3.993 26 C -0.164 4.164 27 C -0.199 4.199 28 C -0.142 4.142 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.368 0.632 35 H 0.256 0.744 36 H 0.406 0.594 37 H 0.185 0.815 38 H 0.191 0.809 39 H 0.193 0.807 40 H 0.173 0.827 41 H 0.163 0.837 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 -19.255 8.783 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.120 3.880 3 C 0.015 3.985 4 N -0.390 5.390 5 C -0.360 4.360 6 H 0.066 0.934 7 C -0.255 4.255 8 N -0.637 5.637 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.228 1.228 12 H -0.174 1.174 13 N -0.360 5.360 14 C 0.353 3.647 15 O -0.429 6.429 16 C -0.189 4.189 17 C -0.017 4.017 18 N -0.173 5.173 19 C -0.060 4.060 20 C -0.017 4.017 21 N -0.189 5.189 22 C -0.072 4.072 23 C -0.149 4.149 24 C -0.106 4.106 25 C -0.020 4.020 26 C -0.183 4.183 27 C -0.236 4.236 28 C -0.179 4.179 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.203 0.797 35 H 0.065 0.935 36 H 0.247 0.753 37 H 0.202 0.798 38 H 0.208 0.792 39 H 0.210 0.790 40 H 0.190 0.810 41 H 0.181 0.819 42 H 0.132 0.868 43 H 0.119 0.881 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.409 -19.407 9.673 24.502 hybrid contribution 0.475 0.952 -0.874 1.377 sum -10.934 -18.455 8.799 23.185 Atomic orbital electron populations 1.22022 0.91926 1.03434 1.03046 1.20020 0.94948 0.90216 0.82826 1.21186 0.83115 0.95294 0.98859 1.42448 1.02110 1.03684 1.90720 1.19020 0.89762 0.86450 1.40766 0.93377 1.25467 0.97066 1.00099 1.02917 1.69897 1.07010 1.26672 1.60099 0.85499 0.77819 0.80552 0.78573 1.19479 1.22791 1.17386 1.46083 1.57599 1.27464 1.04875 1.18053 0.80027 0.83195 0.83404 1.90725 1.39074 1.26563 1.86566 1.21162 1.03318 0.99661 0.94805 1.23399 0.89527 0.90001 0.98797 1.67887 1.20523 1.30702 0.98167 1.20343 0.97425 0.94432 0.93801 1.23419 0.95051 0.98411 0.84803 1.67521 1.14478 1.12873 1.24041 1.22860 0.92406 0.90552 1.01415 1.22337 1.00462 1.01708 0.90398 1.19162 0.98820 0.96627 0.95943 1.22100 0.92975 0.96911 0.90013 1.22403 1.04793 0.93049 0.98048 1.23120 0.93224 1.04278 1.02986 1.23102 0.96513 0.93601 1.04644 0.90066 0.92528 0.90553 0.95207 0.95191 0.79733 0.93481 0.75325 0.79847 0.79184 0.79037 0.81001 0.81939 0.86778 0.88075 0.89022 0.87234 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.37 71.98 0.60 -2.89 16 2 C 0.21 5.77 0.52 3.60 0.00 5.78 16 3 C 0.14 5.71 4.89 86.38 0.42 6.13 16 4 N -0.74 -35.02 5.03 -343.45 -1.73 -36.75 16 5 C -0.23 -13.50 10.47 84.03 0.88 -12.62 16 6 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 7 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 8 N -0.99 -64.77 13.97 21.65 0.30 -64.47 16 9 Si 0.95 45.69 27.74 68.60 1.90 47.59 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 12 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 13 N -0.71 -18.55 4.44 -425.74 -1.89 -20.44 16 14 C 0.57 17.36 7.19 86.79 0.62 17.98 16 15 O -0.55 -20.38 12.62 -3.87 -0.05 -20.42 16 16 C -0.18 -4.91 5.89 -19.96 -0.12 -5.03 16 17 C 0.16 3.70 10.68 85.42 0.91 4.62 16 18 N -0.46 -11.46 10.33 -187.61 -1.94 -13.40 16 19 C 0.06 1.52 6.62 40.36 0.27 1.79 16 20 C 0.16 3.24 11.25 85.38 0.96 4.20 16 21 N -0.48 -9.83 10.28 -195.39 -2.01 -11.83 16 22 C 0.07 1.15 11.08 84.14 0.93 2.09 16 23 C -0.13 -2.23 9.88 22.40 0.22 -2.01 16 24 C -0.10 -2.28 5.75 -21.27 -0.12 -2.40 16 25 C 0.01 0.17 9.51 22.98 0.22 0.39 16 26 C -0.16 -3.87 4.48 -10.79 -0.05 -3.92 16 27 C -0.20 -4.17 8.98 30.59 0.27 -3.90 16 28 C -0.14 -2.20 9.53 30.59 0.29 -1.91 16 29 H 0.08 1.51 7.71 -2.39 -0.02 1.50 16 30 H 0.06 1.61 6.37 -2.39 -0.02 1.60 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.03 1.38 5.99 -2.39 -0.01 1.37 16 34 H 0.37 16.04 4.29 -92.71 -0.40 15.64 16 35 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 36 H 0.41 8.43 3.68 -92.71 -0.34 8.09 16 37 H 0.18 3.19 6.38 -2.91 -0.02 3.17 16 38 H 0.19 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.17 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.16 3.85 7.71 -2.91 -0.02 3.83 16 42 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.09 1.86 5.96 -2.38 -0.01 1.84 16 45 H 0.11 1.39 7.99 -2.39 -0.02 1.37 16 46 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -79.38 373.05 1.62 -77.76 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.24 Total: 37.09 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.79 Total: 4.87 kcal Atomic # 7 Polarization: -139.62 SS G_CDS: -7.26 Total: -146.88 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.05 Total: -20.42 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.90 Total: 47.59 kcal Total: -79.38 1.62 -77.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269626145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.282 kcal (2) G-P(sol) polarization free energy of solvation -79.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds