Wall clock time and date at job start Sat Apr 11 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47134 * 2 1 4 4 C 1.50702 * 109.46811 * 240.00254 * 2 1 3 5 5 N 1.31238 * 124.05897 * 60.03077 * 4 2 1 6 6 N 1.27336 * 120.03922 * 179.97438 * 5 4 2 7 7 S 1.56635 * 109.73872 * 359.97438 * 6 5 4 8 8 C 1.38245 * 124.05267 * 239.71929 * 4 2 1 9 9 C 1.47175 * 128.47693 * 0.02562 * 8 4 2 10 10 O 1.21625 * 119.99800 * 351.69959 * 9 8 4 11 11 N 1.34773 * 120.00261 * 171.70849 * 9 8 4 12 12 C 1.46502 * 119.99663 * 1.71315 * 11 9 8 13 13 C 1.46501 * 120.00392 * 181.71942 * 11 9 8 14 14 C 1.53002 * 109.47115 * 89.99348 * 13 11 9 15 15 C 1.53004 * 109.47194 * 300.00602 * 14 13 11 16 16 C 1.53001 * 109.46979 * 60.00569 * 14 13 11 17 17 C 1.53002 * 109.46932 * 180.02562 * 14 13 11 18 18 N 1.46495 * 109.46955 * 180.02562 * 17 14 13 19 19 C 1.36940 * 120.00147 * 179.97438 * 18 17 14 20 20 H 1.07994 * 119.99721 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00130 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47062 * 59.99954 * 23 21 19 25 25 H 1.48503 * 109.47442 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47110 * 300.00127 * 23 21 19 27 27 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47186 * 59.99580 * 1 2 3 29 29 H 1.08998 * 109.46925 * 299.99914 * 1 2 3 30 30 H 1.08993 * 109.47200 * 120.00205 * 2 1 3 31 31 H 1.08994 * 109.47119 * 59.99723 * 3 2 1 32 32 H 1.08994 * 109.47292 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46976 * 300.00229 * 3 2 1 34 34 H 1.09006 * 109.46939 * 83.65534 * 12 11 9 35 35 H 1.09004 * 109.46876 * 203.64434 * 12 11 9 36 36 H 1.08995 * 109.47644 * 323.64841 * 12 11 9 37 37 H 1.08996 * 109.46903 * 209.99851 * 13 11 9 38 38 H 1.09004 * 109.46323 * 330.00055 * 13 11 9 39 39 H 1.08994 * 109.47247 * 59.99887 * 15 14 13 40 40 H 1.08996 * 109.46621 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.46766 * 299.99677 * 15 14 13 42 42 H 1.08996 * 109.47357 * 59.99302 * 16 14 13 43 43 H 1.09004 * 109.47144 * 180.02562 * 16 14 13 44 44 H 1.09007 * 109.46890 * 299.99859 * 16 14 13 45 45 H 1.08996 * 109.46798 * 300.00327 * 17 14 13 46 46 H 1.08994 * 109.47031 * 60.00273 * 17 14 13 47 47 H 0.97001 * 120.00103 * 0.02562 * 18 17 14 48 48 H 0.97002 * 120.00073 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7652 -0.3316 -2.4583 6 7 2.2310 -0.9896 -3.4440 7 16 3.0835 -2.1947 -2.9201 8 6 2.8348 -1.8357 -1.2014 9 6 3.3545 -2.5597 -0.0302 10 8 3.2127 -2.0943 1.0845 11 7 3.9878 -3.7382 -0.1929 12 6 4.1919 -4.2804 -1.5385 13 6 4.4718 -4.4772 0.9758 14 6 3.3769 -5.4251 1.4693 15 6 2.1373 -4.6155 1.8552 16 6 3.0160 -6.4109 0.3562 17 6 3.8823 -6.1964 2.6902 18 7 2.8341 -7.1044 3.1624 19 6 3.0598 -7.9035 4.2514 20 1 4.0104 -7.8639 4.7623 21 6 2.0669 -8.7642 4.6984 22 7 0.9085 -8.8128 4.0753 23 14 2.3745 -9.8536 6.1843 24 1 2.6732 -9.0058 7.3663 25 1 1.1666 -10.6739 6.4554 26 1 3.5285 -10.7477 5.9121 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 5.0846 -3.8353 -1.9780 35 1 4.3165 -5.3617 -1.4794 36 1 3.3266 -4.0477 -2.1591 37 1 5.3549 -5.0539 0.7008 38 1 4.7289 -3.7748 1.7688 39 1 1.7772 -4.0658 0.9857 40 1 1.3575 -5.2908 2.2072 41 1 2.3944 -3.9133 2.6482 42 1 3.8991 -6.9875 0.0812 43 1 2.2356 -7.0859 0.7076 44 1 2.6559 -5.8610 -0.5134 45 1 4.7655 -6.7730 2.4156 46 1 4.1391 -5.4939 3.4830 47 1 1.9804 -7.1402 2.7032 48 1 0.2147 -9.4146 4.3875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282329742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:24 Heat of formation + Delta-G solvation = 45.912552 kcal Electronic energy + Delta-G solvation = -28533.444928 eV Core-core repulsion = 24751.686115 eV Total energy + Delta-G solvation = -3781.758813 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31725 -40.25815 -37.47797 -35.75987 -35.35042 -33.23219 -31.44735 -30.20835 -28.23110 -27.97279 -27.32303 -26.76511 -25.94780 -25.34791 -23.46411 -22.43814 -21.65626 -19.67557 -18.59688 -18.29725 -17.32603 -17.29392 -16.42358 -16.28559 -15.55229 -15.40330 -14.69572 -14.46936 -14.33776 -13.98588 -13.84401 -13.62722 -13.49997 -13.30353 -13.27652 -12.80122 -12.69368 -12.52468 -12.37263 -12.33599 -12.24763 -11.45788 -11.44541 -11.33948 -11.24276 -11.15017 -11.02798 -10.81924 -10.80764 -10.46179 -10.30735 -10.22216 -10.06135 -9.97859 -9.91525 -9.86299 -9.68035 -8.85636 -8.79911 -6.89418 -5.75371 -3.03185 -0.50125 0.52624 1.24717 1.73170 2.59103 2.79188 3.44649 3.49172 3.50043 3.63807 4.09053 4.27938 4.57835 4.60776 4.79674 4.88038 4.93813 4.94381 5.05608 5.16356 5.25785 5.31342 5.48283 5.49593 5.53765 5.63704 5.66424 5.69401 5.81544 5.86083 5.87359 5.99527 6.04842 6.07047 6.17846 6.22595 6.30712 6.44423 6.52226 6.69006 6.72778 6.87902 6.91709 7.01899 7.45593 7.70700 7.81869 8.44069 9.55205 10.13774 10.48250 11.47604 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.002721 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.890625 B =10288.221163 C =10999.814193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 C -0.140 4.140 4 C 0.108 3.892 5 N -0.244 5.244 6 N -0.279 5.279 7 S 0.420 5.580 8 C -0.290 4.290 9 C 0.600 3.400 10 O -0.503 6.503 11 N -0.597 5.597 12 C 0.060 3.940 13 C 0.129 3.871 14 C -0.087 4.087 15 C -0.125 4.125 16 C -0.138 4.138 17 C 0.166 3.834 18 N -0.727 5.727 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.287 1.287 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.122 0.878 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.018 0.982 46 H 0.020 0.980 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 16.016 -16.006 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 C -0.197 4.197 4 C -0.039 4.039 5 N -0.110 5.110 6 N -0.258 5.258 7 S 0.559 5.441 8 C -0.430 4.430 9 C 0.385 3.615 10 O -0.379 6.379 11 N -0.330 5.330 12 C -0.085 4.085 13 C 0.007 3.993 14 C -0.089 4.089 15 C -0.183 4.183 16 C -0.195 4.195 17 C 0.038 3.962 18 N -0.373 5.373 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.214 1.214 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.038 0.962 47 H 0.220 0.780 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.172 16.189 -17.299 24.483 hybrid contribution -0.339 -0.632 1.803 1.941 sum 5.833 15.557 -15.496 22.719 Atomic orbital electron populations 1.21817 0.93133 1.02400 1.02694 1.20159 0.96651 0.96151 0.92063 1.21783 1.01076 0.94239 1.02649 1.22947 0.94084 0.92483 0.94411 1.70663 1.20036 1.24285 0.96021 1.78695 1.14376 1.07709 1.24998 1.82899 1.40541 1.25990 0.94680 1.27801 1.10801 1.04560 0.99859 1.16429 0.78336 0.80514 0.86228 1.90806 1.56624 1.66777 1.23718 1.47587 1.57184 1.20113 1.08067 1.22258 1.00900 1.02350 0.83028 1.21710 0.96275 0.94531 0.86804 1.21138 0.95859 0.95167 0.96689 1.21738 0.97138 0.99215 1.00189 1.21901 1.02023 0.98616 0.96971 1.20566 0.92082 0.91645 0.91902 1.42371 1.14310 1.45792 1.34805 1.19184 0.98752 1.14401 1.04572 0.91306 1.24714 0.96189 1.00462 0.99619 1.69646 1.04893 1.41461 1.42342 0.86273 0.76733 0.80389 0.82818 1.21303 1.21753 1.21355 0.92530 0.91917 0.91295 0.85975 0.91360 0.92703 0.91959 0.91294 0.87968 0.91928 0.89863 0.89086 0.94586 0.91902 0.92281 0.93001 0.91235 0.93826 0.96420 0.96174 0.78006 0.93517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.16 37.16 0.34 -1.08 16 2 C -0.03 -0.31 3.25 -91.77 -0.30 -0.61 16 3 C -0.14 -1.30 9.16 37.16 0.34 -0.95 16 4 C 0.11 1.28 5.53 -82.84 -0.46 0.82 16 5 N -0.24 -3.04 11.51 33.42 0.38 -2.65 16 6 N -0.28 -3.23 12.51 60.35 0.75 -2.47 16 7 S 0.42 3.62 19.06 -107.50 -2.05 1.57 16 8 C -0.29 -3.25 6.49 -35.95 -0.23 -3.48 16 9 C 0.60 7.45 6.01 -12.63 -0.08 7.37 16 10 O -0.50 -7.54 12.49 5.26 0.07 -7.48 16 11 N -0.60 -6.34 2.40 -182.94 -0.44 -6.78 16 12 C 0.06 0.43 7.78 59.85 0.47 0.90 16 13 C 0.13 1.54 4.58 -4.04 -0.02 1.53 16 14 C -0.09 -1.33 0.60 -154.50 -0.09 -1.42 16 15 C -0.13 -2.13 6.99 37.16 0.26 -1.87 16 16 C -0.14 -1.98 7.07 37.16 0.26 -1.72 16 17 C 0.17 3.20 5.15 -4.04 -0.02 3.18 16 18 N -0.73 -17.91 5.00 -59.92 -0.30 -18.21 16 19 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 23 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.12 1.51 5.55 -51.93 -0.29 1.23 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.34 7.99 -51.93 -0.42 -0.07 16 35 H 0.10 0.65 6.34 -51.93 -0.33 0.32 16 36 H 0.06 0.43 4.58 -25.38 -0.12 0.31 16 37 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 39 H 0.04 0.57 6.17 -51.93 -0.32 0.25 16 40 H 0.06 1.23 6.86 -51.93 -0.36 0.87 16 41 H 0.06 1.06 7.76 -51.93 -0.40 0.66 16 42 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 43 H 0.07 1.23 6.86 -51.93 -0.36 0.88 16 44 H 0.04 0.53 6.09 -51.92 -0.32 0.21 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.38 9.96 5.36 -40.82 -0.22 9.74 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -32.42 382.54 -7.16 -39.58 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.27 Total: 5.24 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 0.23 Total: -4.56 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 1.13 Total: -57.44 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.07 Total: -7.48 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.05 Total: 1.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.42 -7.16 -39.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282329742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.494 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds