Wall clock time and date at job start Sat Apr 11 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47134 * 2 1 4 4 C 1.50702 * 109.46811 * 240.00254 * 2 1 3 5 5 N 1.31238 * 124.05897 * 60.03077 * 4 2 1 6 6 N 1.27336 * 120.03922 * 179.97438 * 5 4 2 7 7 S 1.56635 * 109.73872 * 359.97438 * 6 5 4 8 8 C 1.38245 * 124.05267 * 239.71929 * 4 2 1 9 9 C 1.47175 * 128.47693 * 0.02562 * 8 4 2 10 10 O 1.21625 * 119.99800 * 351.69959 * 9 8 4 11 11 N 1.34773 * 120.00261 * 171.70849 * 9 8 4 12 12 C 1.46502 * 119.99663 * 1.71315 * 11 9 8 13 13 C 1.46501 * 120.00392 * 181.71942 * 11 9 8 14 14 C 1.53002 * 109.47115 * 89.99348 * 13 11 9 15 15 C 1.53004 * 109.47194 * 300.00602 * 14 13 11 16 16 C 1.53001 * 109.46979 * 60.00569 * 14 13 11 17 17 C 1.53002 * 109.46932 * 180.02562 * 14 13 11 18 18 N 1.46495 * 109.46955 * 180.02562 * 17 14 13 19 19 C 1.36940 * 120.00147 * 179.97438 * 18 17 14 20 20 H 1.07994 * 119.99721 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00130 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00190 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00051 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47062 * 59.99954 * 23 21 19 25 25 H 1.48503 * 109.47442 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47110 * 300.00127 * 23 21 19 27 27 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47186 * 59.99580 * 1 2 3 29 29 H 1.08998 * 109.46925 * 299.99914 * 1 2 3 30 30 H 1.08993 * 109.47200 * 120.00205 * 2 1 3 31 31 H 1.08994 * 109.47119 * 59.99723 * 3 2 1 32 32 H 1.08994 * 109.47292 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46976 * 300.00229 * 3 2 1 34 34 H 1.09006 * 109.46939 * 83.65534 * 12 11 9 35 35 H 1.09004 * 109.46876 * 203.64434 * 12 11 9 36 36 H 1.08995 * 109.47644 * 323.64841 * 12 11 9 37 37 H 1.08996 * 109.46903 * 209.99851 * 13 11 9 38 38 H 1.09004 * 109.46323 * 330.00055 * 13 11 9 39 39 H 1.08994 * 109.47247 * 59.99887 * 15 14 13 40 40 H 1.08996 * 109.46621 * 180.02562 * 15 14 13 41 41 H 1.09001 * 109.46766 * 299.99677 * 15 14 13 42 42 H 1.08996 * 109.47357 * 59.99302 * 16 14 13 43 43 H 1.09004 * 109.47144 * 180.02562 * 16 14 13 44 44 H 1.09007 * 109.46890 * 299.99859 * 16 14 13 45 45 H 1.08996 * 109.46798 * 300.00327 * 17 14 13 46 46 H 1.08994 * 109.47031 * 60.00273 * 17 14 13 47 47 H 0.97001 * 120.00103 * 0.02562 * 18 17 14 48 48 H 0.97002 * 120.00073 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7652 -0.3316 -2.4583 6 7 2.2310 -0.9896 -3.4440 7 16 3.0835 -2.1947 -2.9201 8 6 2.8348 -1.8357 -1.2014 9 6 3.3545 -2.5597 -0.0302 10 8 3.2127 -2.0943 1.0845 11 7 3.9878 -3.7382 -0.1929 12 6 4.1919 -4.2804 -1.5385 13 6 4.4718 -4.4772 0.9758 14 6 3.3769 -5.4251 1.4693 15 6 2.1373 -4.6155 1.8552 16 6 3.0160 -6.4109 0.3562 17 6 3.8823 -6.1964 2.6902 18 7 2.8341 -7.1044 3.1624 19 6 3.0598 -7.9035 4.2514 20 1 4.0104 -7.8639 4.7623 21 6 2.0669 -8.7642 4.6984 22 7 0.9085 -8.8128 4.0753 23 14 2.3745 -9.8536 6.1843 24 1 2.6732 -9.0058 7.3663 25 1 1.1666 -10.6739 6.4554 26 1 3.5285 -10.7477 5.9121 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 5.0846 -3.8353 -1.9780 35 1 4.3165 -5.3617 -1.4794 36 1 3.3266 -4.0477 -2.1591 37 1 5.3549 -5.0539 0.7008 38 1 4.7289 -3.7748 1.7688 39 1 1.7772 -4.0658 0.9857 40 1 1.3575 -5.2908 2.2072 41 1 2.3944 -3.9133 2.6482 42 1 3.8991 -6.9875 0.0812 43 1 2.2356 -7.0859 0.7076 44 1 2.6559 -5.8610 -0.5134 45 1 4.7655 -6.7730 2.4156 46 1 4.1391 -5.4939 3.4830 47 1 1.9804 -7.1402 2.7032 48 1 0.2147 -9.4146 4.3875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282329742.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:24 Heat of formation + Delta-G solvation = 25.166582 kcal Electronic energy + Delta-G solvation = -28534.344541 eV Core-core repulsion = 24751.686115 eV Total energy + Delta-G solvation = -3782.658426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16664 -41.21629 -38.73269 -36.70294 -36.41553 -34.96944 -32.55314 -31.89840 -29.12529 -28.86514 -28.09207 -28.01851 -27.34111 -26.63051 -24.81175 -23.74680 -22.56018 -20.62440 -19.86918 -19.26140 -19.05045 -18.17804 -17.39989 -17.21906 -16.62923 -16.54002 -16.18004 -15.62173 -15.42138 -15.34080 -15.16387 -14.69362 -14.43881 -14.37747 -14.14377 -14.06192 -13.91042 -13.73936 -13.49060 -13.24623 -13.07583 -12.93998 -12.77419 -12.55944 -12.48575 -12.28248 -12.24844 -12.20402 -12.14855 -11.98918 -11.66888 -11.65494 -11.49171 -11.09980 -10.89954 -10.87837 -10.83490 -10.67418 -9.72536 -8.93664 -7.92019 -5.19168 -1.33120 -0.25989 0.46772 0.86482 1.48063 1.50991 1.56840 1.71150 1.90116 2.58592 2.81071 3.28767 3.41617 3.47302 3.83628 3.91353 3.92508 3.99109 4.05425 4.14173 4.14638 4.31484 4.44758 4.50371 4.57900 4.67094 4.73733 4.76205 4.78671 4.83639 4.88974 4.90470 4.93909 4.97104 5.10543 5.15407 5.19150 5.21343 5.27369 5.35926 5.43316 5.47169 5.51880 5.57284 6.13939 6.30556 6.63607 6.91536 7.37339 8.15816 8.38104 9.31552 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.018191 B = 0.002721 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.890625 B =10288.221163 C =10999.814193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.134 4.134 4 C 0.099 3.901 5 N -0.267 5.267 6 N -0.312 5.312 7 S 0.521 5.479 8 C -0.315 4.315 9 C 0.596 3.404 10 O -0.538 6.538 11 N -0.593 5.593 12 C 0.048 3.952 13 C 0.138 3.862 14 C -0.078 4.078 15 C -0.112 4.112 16 C -0.131 4.131 17 C 0.163 3.837 18 N -0.740 5.740 19 C -0.242 4.242 20 H 0.075 0.925 21 C -0.076 4.076 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.281 1.281 25 H -0.298 1.298 26 H -0.276 1.276 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.028 0.972 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.033 0.967 46 H 0.012 0.988 47 H 0.375 0.625 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.275 15.826 -17.613 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.053 4.053 3 C -0.191 4.191 4 C -0.049 4.049 5 N -0.131 5.131 6 N -0.291 5.291 7 S 0.660 5.340 8 C -0.455 4.455 9 C 0.382 3.618 10 O -0.416 6.416 11 N -0.324 5.324 12 C -0.096 4.096 13 C 0.015 3.985 14 C -0.080 4.080 15 C -0.170 4.170 16 C -0.188 4.188 17 C 0.036 3.964 18 N -0.383 5.383 19 C -0.374 4.374 20 H 0.093 0.907 21 C -0.268 4.268 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.207 1.207 25 H -0.224 1.224 26 H -0.202 1.202 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.088 0.912 45 H 0.051 0.949 46 H 0.030 0.970 47 H 0.209 0.791 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.318 16.019 -18.946 26.168 hybrid contribution -0.910 -0.594 2.228 2.479 sum 7.409 15.425 -16.718 23.923 Atomic orbital electron populations 1.21784 0.92690 1.01755 1.03371 1.20140 0.97045 0.96807 0.91312 1.21740 1.00734 0.93375 1.03288 1.23074 0.94351 0.92905 0.94578 1.70715 1.21142 1.25177 0.96059 1.78414 1.15736 1.09294 1.25667 1.82433 1.37386 1.22855 0.91358 1.27791 1.11405 1.04858 1.01488 1.16633 0.78143 0.80928 0.86100 1.90795 1.57923 1.67766 1.25143 1.47610 1.56385 1.19348 1.09105 1.22603 1.02302 1.03621 0.81109 1.21544 0.95778 0.93848 0.87333 1.21038 0.95962 0.95408 0.95548 1.21586 0.97192 0.98265 0.99940 1.21835 1.01724 0.98021 0.97202 1.20736 0.91263 0.91061 0.93293 1.42579 1.15192 1.46292 1.34255 1.19616 0.98737 1.14013 1.04988 0.90676 1.25517 0.96201 1.02464 1.02668 1.69812 1.05764 1.42531 1.44074 0.85240 0.76476 0.78614 0.79611 1.20718 1.22391 1.20191 0.93787 0.91776 0.90028 0.87702 0.90047 0.93135 0.91924 0.88147 0.86323 0.91689 0.86430 0.90307 0.93568 0.95325 0.93904 0.90943 0.95104 0.91231 0.94918 0.96984 0.79126 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.16 71.98 0.66 -2.13 16 2 C -0.03 -0.69 3.25 -11.54 -0.04 -0.72 16 3 C -0.13 -2.46 9.16 71.98 0.66 -1.80 16 4 C 0.10 2.31 5.53 42.65 0.24 2.54 16 5 N -0.27 -6.44 11.51 -48.18 -0.55 -7.00 16 6 N -0.31 -6.72 12.51 37.02 0.46 -6.25 16 7 S 0.52 7.49 19.06 -56.49 -1.08 6.41 16 8 C -0.32 -6.63 6.49 24.62 0.16 -6.47 16 9 C 0.60 14.07 6.01 86.59 0.52 14.59 16 10 O -0.54 -16.23 12.49 -4.11 -0.05 -16.29 16 11 N -0.59 -10.98 2.40 -850.95 -2.04 -13.02 16 12 C 0.05 0.47 7.78 127.77 0.99 1.47 16 13 C 0.14 2.96 4.58 86.38 0.40 3.36 16 14 C -0.08 -2.30 0.60 -52.18 -0.03 -2.33 16 15 C -0.11 -3.91 6.99 71.98 0.50 -3.40 16 16 C -0.13 -3.51 7.07 71.98 0.51 -3.00 16 17 C 0.16 6.20 5.15 86.38 0.44 6.64 16 18 N -0.74 -36.89 5.00 -343.48 -1.72 -38.61 16 19 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 20 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 21 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 22 N -0.97 -59.63 13.06 21.65 0.28 -59.34 16 23 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.11 2.71 5.55 -2.39 -0.01 2.70 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 0.45 7.99 -2.38 -0.02 0.43 16 35 H 0.12 0.88 6.34 -2.39 -0.02 0.87 16 36 H 0.07 0.61 4.58 -19.27 -0.09 0.52 16 37 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16 38 H 0.08 1.95 7.40 -2.39 -0.02 1.94 16 39 H 0.05 1.48 6.17 -2.39 -0.01 1.46 16 40 H 0.03 1.16 6.86 -2.39 -0.02 1.15 16 41 H 0.04 1.60 7.76 -2.39 -0.02 1.58 16 42 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 43 H 0.03 1.08 6.86 -2.38 -0.02 1.06 16 44 H 0.07 1.48 6.09 -2.38 -0.01 1.47 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.38 20.06 5.36 -92.71 -0.50 19.57 16 48 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -72.66 382.54 4.05 -68.61 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.40 Total: 25.01 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 6.32 Total: -7.75 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -3.57 Total: -124.23 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.05 Total: -16.29 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -1.08 Total: 6.41 kcal Total: -72.66 4.05 -68.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282329742.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.775 kcal (2) G-P(sol) polarization free energy of solvation -72.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds