Wall clock time and date at job start Sat Apr 11 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47359 * 2 1 4 4 N 1.46497 * 109.47365 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00236 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99592 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00131 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00014 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99954 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47206 * 89.99925 * 9 7 5 11 11 H 1.48505 * 109.47119 * 210.00099 * 9 7 5 12 12 H 1.48504 * 109.46982 * 329.99739 * 9 7 5 13 13 N 1.46497 * 109.47212 * 119.99809 * 2 1 3 14 14 C 1.34774 * 120.00498 * 298.67790 * 13 2 1 15 15 O 1.21549 * 119.99590 * 5.21423 * 14 13 2 16 16 C 1.47903 * 120.00721 * 185.21796 * 14 13 2 17 17 N 1.32374 * 120.63284 * 354.61176 * 16 14 13 18 18 N 1.28093 * 123.18509 * 180.02562 * 17 16 14 19 19 C 1.31808 * 123.49452 * 359.42889 * 18 17 16 20 20 C 1.40408 * 119.13045 * 0.84333 * 19 18 17 21 21 C 1.40230 * 122.73526 * 179.14300 * 20 19 18 22 22 C 1.36257 * 119.36795 * 180.02562 * 21 20 19 23 23 C 1.39375 * 121.07796 * 0.02562 * 22 21 20 24 24 C 1.36368 * 121.08409 * 0.02562 * 23 22 21 25 25 C 1.39832 * 119.41816 * 0.25416 * 24 23 22 26 26 C 1.53003 * 109.46788 * 239.99967 * 2 1 3 27 27 C 1.52997 * 117.49917 * 12.40460 * 26 2 1 28 28 C 1.53000 * 117.49923 * 303.74023 * 26 2 1 29 29 H 1.09007 * 109.46951 * 300.00057 * 1 2 3 30 30 H 1.09001 * 109.47111 * 59.99853 * 1 2 3 31 31 H 1.08995 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46605 * 300.00126 * 3 2 1 33 33 H 1.08999 * 109.46901 * 59.99464 * 3 2 1 34 34 H 0.97000 * 119.99581 * 359.97438 * 4 3 2 35 35 H 0.96995 * 119.99995 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99785 * 118.67426 * 13 2 1 37 37 H 1.07995 * 120.42892 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.31826 * 0.03781 * 21 20 19 39 39 H 1.07997 * 119.45906 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.45802 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.28965 * 179.97438 * 24 23 22 42 42 H 1.09000 * 115.54513 * 158.07717 * 26 2 1 43 43 H 1.08994 * 117.50054 * 359.97438 * 27 26 2 44 44 H 1.09001 * 117.50033 * 145.02321 * 27 26 2 45 45 H 1.08994 * 117.49605 * 214.98141 * 28 26 2 46 46 H 1.08997 * 117.49738 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1898 2.6284 -0.0002 6 1 3.6497 3.5637 0.0002 7 6 5.5779 2.6284 -0.0002 8 7 6.2360 3.7682 -0.0004 9 14 6.5118 1.0106 -0.0002 10 1 6.7593 0.5818 -1.4002 11 1 7.8094 1.1882 0.6999 12 1 5.7093 -0.0242 0.7001 13 7 2.0183 -0.6905 1.1962 14 6 1.7149 -0.2148 2.4201 15 8 0.9592 0.7303 2.5346 16 6 2.3016 -0.8425 3.6240 17 7 3.0405 -1.9361 3.5224 18 7 3.5713 -2.5199 4.5314 19 6 3.4464 -2.0879 5.7704 20 6 2.6805 -0.9377 6.0193 21 6 2.4831 -0.4224 7.3085 22 6 1.7260 0.6987 7.4713 23 6 1.1455 1.3398 6.3783 24 6 1.3162 0.8651 5.1114 25 6 2.0821 -0.2868 4.9069 26 6 2.0399 -0.7213 -1.2493 27 6 1.0257 -1.0227 -2.3544 28 6 1.5647 -2.1573 -1.4794 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.9900 0.6024 -0.0006 35 1 7.2060 3.7682 0.0000 36 1 2.5601 -1.4903 1.1073 37 1 3.9160 -2.6193 6.5849 38 1 2.9270 -0.9095 8.1642 39 1 1.5727 1.0966 8.4635 40 1 0.5500 2.2265 6.5375 41 1 0.8601 1.3719 4.2738 42 1 3.0567 -0.4728 -1.5533 43 1 -0.0049 -0.7076 -2.1913 44 1 1.3753 -0.9730 -3.3856 45 1 2.2687 -2.8534 -1.9353 46 1 0.8884 -2.5880 -0.7410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318706119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:31 Heat of formation + Delta-G solvation = 96.711462 kcal Electronic energy + Delta-G solvation = -30139.903043 eV Core-core repulsion = 26224.903085 eV Total energy + Delta-G solvation = -3914.999959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63049 -40.09880 -38.18398 -37.94549 -34.88502 -33.72959 -33.47595 -31.96033 -31.46709 -30.60419 -29.80055 -26.26458 -25.80844 -24.43225 -23.85685 -22.93054 -22.29056 -21.85673 -20.94140 -19.06832 -18.62570 -18.27815 -17.66985 -17.55859 -16.39265 -15.71889 -15.58252 -15.42555 -14.92165 -14.83280 -14.60317 -14.31043 -14.18132 -13.95338 -13.68797 -13.10494 -12.81330 -12.75044 -12.51307 -12.41794 -12.29889 -12.08644 -11.78865 -11.72576 -11.50971 -11.13011 -10.96119 -10.87064 -10.83222 -10.65757 -10.28666 -10.19006 -9.93343 -9.86926 -9.56036 -9.55226 -9.43947 -8.86345 -8.80928 -8.61355 -7.14749 -5.72085 -3.05864 -0.18648 0.42915 1.43658 2.52411 2.93543 3.13937 3.39176 3.43612 3.47471 3.74924 3.84210 3.97547 4.17472 4.30901 4.42050 4.52634 4.63011 4.66923 4.83221 4.88347 4.97134 5.00886 5.06513 5.20331 5.27371 5.30642 5.44096 5.53509 5.59487 5.60720 5.70216 5.73939 5.86023 5.92770 5.95311 5.99214 6.06311 6.16907 6.18351 6.20135 6.32156 6.41897 6.53028 6.57048 6.77134 6.93752 7.64579 8.05140 8.25827 8.46951 8.58002 9.26588 9.99046 10.19413 11.46639 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.004641 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.660707 B = 6031.096448 C = 7203.993434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.195 3.805 3 C 0.149 3.851 4 N -0.751 5.751 5 C -0.236 4.236 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.877 3.123 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 N -0.687 5.687 14 C 0.588 3.412 15 O -0.519 6.519 16 C 0.077 3.923 17 N -0.232 5.232 18 N -0.265 5.265 19 C 0.097 3.903 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.095 4.095 23 C -0.104 4.104 24 C -0.084 4.084 25 C -0.046 4.046 26 C -0.157 4.157 27 C -0.167 4.167 28 C -0.182 4.182 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.359 0.641 35 H 0.258 0.742 36 H 0.409 0.591 37 H 0.180 0.820 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.177 0.823 42 H 0.117 0.883 43 H 0.102 0.898 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.324 -12.690 11.472 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.110 3.890 3 C 0.021 3.979 4 N -0.397 5.397 5 C -0.366 4.366 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.584 5.584 9 Si 0.708 3.292 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.203 1.203 13 N -0.337 5.337 14 C 0.371 3.629 15 O -0.395 6.395 16 C -0.080 4.080 17 N -0.069 5.069 18 N -0.097 5.097 19 C -0.077 4.077 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.103 4.103 25 C -0.054 4.054 26 C -0.175 4.175 27 C -0.204 4.204 28 C -0.219 4.219 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.192 0.808 35 H 0.068 0.932 36 H 0.244 0.756 37 H 0.197 0.803 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.194 0.806 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.118 -12.976 10.412 21.187 hybrid contribution 0.862 -0.423 1.073 1.440 sum -12.256 -13.400 11.485 21.487 Atomic orbital electron populations 1.22301 0.94014 1.01957 1.03913 1.20228 0.93761 0.93228 0.81733 1.21038 0.85203 0.91390 1.00244 1.42641 1.00727 1.05202 1.91137 1.19053 0.89428 0.85850 1.42221 0.89227 1.24621 0.96090 0.96015 1.02403 1.69695 1.06868 1.23743 1.58086 0.86648 0.79936 0.84869 0.77790 1.21027 1.21838 1.20295 1.45863 1.53220 1.30130 1.04514 1.17261 0.80819 0.82668 0.82164 1.90556 1.36059 1.27558 1.85310 1.23080 0.96328 0.94447 0.94160 1.72702 1.04231 1.06111 1.23855 1.72617 1.15558 1.24700 0.96825 1.24787 0.93313 0.92528 0.97056 1.18904 0.98822 0.96848 0.94728 1.20912 0.99127 0.96873 0.95073 1.21159 0.95750 0.94857 0.99627 1.21282 0.98778 0.99891 0.92374 1.22086 0.95112 0.93505 0.99631 1.18618 0.98021 0.96749 0.92000 1.22528 1.00717 0.97530 0.96760 1.23075 0.99161 1.02429 0.95777 1.22987 1.04036 0.91352 1.03505 0.89964 0.91163 0.92717 0.94503 0.93036 0.80769 0.93197 0.75556 0.80341 0.84302 0.84998 0.84760 0.80609 0.86464 0.87991 0.88680 0.88768 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 7.06 37.16 0.26 -1.93 16 2 C 0.20 3.10 0.54 -131.82 -0.07 3.03 16 3 C 0.15 3.02 4.95 -4.04 -0.02 3.00 16 4 N -0.75 -18.25 4.84 -59.91 -0.29 -18.54 16 5 C -0.24 -6.85 10.47 -15.06 -0.16 -7.01 16 6 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 7 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 8 N -0.94 -30.12 13.97 55.49 0.78 -29.35 16 9 Si 0.88 22.99 27.73 -169.99 -4.71 18.28 16 10 H -0.28 -7.28 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 12 H -0.28 -6.98 6.52 56.52 0.37 -6.61 16 13 N -0.69 -11.16 4.72 -48.52 -0.23 -11.39 16 14 C 0.59 10.13 7.19 -12.30 -0.09 10.04 16 15 O -0.52 -9.28 9.82 5.32 0.05 -9.23 16 16 C 0.08 1.29 6.90 -82.43 -0.57 0.72 16 17 N -0.23 -3.89 10.70 33.56 0.36 -3.53 16 18 N -0.27 -4.04 11.42 30.90 0.35 -3.69 16 19 C 0.10 1.14 11.20 -16.75 -0.19 0.95 16 20 C -0.09 -1.05 5.75 -106.85 -0.61 -1.66 16 21 C -0.10 -0.89 9.84 -39.55 -0.39 -1.28 16 22 C -0.09 -0.81 9.95 -39.87 -0.40 -1.20 16 23 C -0.10 -1.07 9.95 -39.83 -0.40 -1.47 16 24 C -0.08 -1.15 9.27 -39.66 -0.37 -1.52 16 25 C -0.05 -0.69 5.77 -106.57 -0.61 -1.30 16 26 C -0.16 -2.27 4.86 -90.62 -0.44 -2.71 16 27 C -0.17 -1.95 9.63 -26.69 -0.26 -2.20 16 28 C -0.18 -2.10 9.74 -26.69 -0.26 -2.36 16 29 H 0.08 1.22 6.09 -51.93 -0.32 0.90 16 30 H 0.07 0.85 6.80 -51.93 -0.35 0.50 16 31 H 0.05 0.65 6.99 -51.93 -0.36 0.29 16 32 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 1.14 6.25 -51.93 -0.32 0.81 16 34 H 0.36 8.59 4.49 -40.82 -0.18 8.41 16 35 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 36 H 0.41 6.36 7.79 -40.82 -0.32 6.05 16 37 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 41 H 0.18 2.63 5.12 -52.49 -0.27 2.36 16 42 H 0.12 1.98 7.08 -51.93 -0.37 1.62 16 43 H 0.10 1.08 5.88 -51.93 -0.31 0.77 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.09 1.03 7.37 -51.93 -0.38 0.64 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -35.16 369.37 -8.52 -43.68 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -5.73 Total: 15.09 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -4.66 Total: -6.88 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: 0.97 Total: -66.50 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.05 Total: -9.23 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.71 Total: 18.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.16 -8.52 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318706119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.394 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds