Wall clock time and date at job start Sat Apr 11 2020 06:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47359 * 2 1 4 4 N 1.46497 * 109.47365 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00236 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99592 * 359.97438 * 5 4 3 7 7 C 1.38813 * 120.00131 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00014 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99954 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47206 * 89.99925 * 9 7 5 11 11 H 1.48505 * 109.47119 * 210.00099 * 9 7 5 12 12 H 1.48504 * 109.46982 * 329.99739 * 9 7 5 13 13 N 1.46497 * 109.47212 * 119.99809 * 2 1 3 14 14 C 1.34774 * 120.00498 * 298.67790 * 13 2 1 15 15 O 1.21549 * 119.99590 * 5.21423 * 14 13 2 16 16 C 1.47903 * 120.00721 * 185.21796 * 14 13 2 17 17 N 1.32374 * 120.63284 * 354.61176 * 16 14 13 18 18 N 1.28093 * 123.18509 * 180.02562 * 17 16 14 19 19 C 1.31808 * 123.49452 * 359.42889 * 18 17 16 20 20 C 1.40408 * 119.13045 * 0.84333 * 19 18 17 21 21 C 1.40230 * 122.73526 * 179.14300 * 20 19 18 22 22 C 1.36257 * 119.36795 * 180.02562 * 21 20 19 23 23 C 1.39375 * 121.07796 * 0.02562 * 22 21 20 24 24 C 1.36368 * 121.08409 * 0.02562 * 23 22 21 25 25 C 1.39832 * 119.41816 * 0.25416 * 24 23 22 26 26 C 1.53003 * 109.46788 * 239.99967 * 2 1 3 27 27 C 1.52997 * 117.49917 * 12.40460 * 26 2 1 28 28 C 1.53000 * 117.49923 * 303.74023 * 26 2 1 29 29 H 1.09007 * 109.46951 * 300.00057 * 1 2 3 30 30 H 1.09001 * 109.47111 * 59.99853 * 1 2 3 31 31 H 1.08995 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46605 * 300.00126 * 3 2 1 33 33 H 1.08999 * 109.46901 * 59.99464 * 3 2 1 34 34 H 0.97000 * 119.99581 * 359.97438 * 4 3 2 35 35 H 0.96995 * 119.99995 * 179.97438 * 8 7 5 36 36 H 0.97005 * 119.99785 * 118.67426 * 13 2 1 37 37 H 1.07995 * 120.42892 * 180.02562 * 19 18 17 38 38 H 1.08002 * 120.31826 * 0.03781 * 21 20 19 39 39 H 1.07997 * 119.45906 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.45802 * 179.97438 * 23 22 21 41 41 H 1.08002 * 120.28965 * 179.97438 * 24 23 22 42 42 H 1.09000 * 115.54513 * 158.07717 * 26 2 1 43 43 H 1.08994 * 117.50054 * 359.97438 * 27 26 2 44 44 H 1.09001 * 117.50033 * 145.02321 * 27 26 2 45 45 H 1.08994 * 117.49605 * 214.98141 * 28 26 2 46 46 H 1.08997 * 117.49738 * 0.02562 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1898 2.6284 -0.0002 6 1 3.6497 3.5637 0.0002 7 6 5.5779 2.6284 -0.0002 8 7 6.2360 3.7682 -0.0004 9 14 6.5118 1.0106 -0.0002 10 1 6.7593 0.5818 -1.4002 11 1 7.8094 1.1882 0.6999 12 1 5.7093 -0.0242 0.7001 13 7 2.0183 -0.6905 1.1962 14 6 1.7149 -0.2148 2.4201 15 8 0.9592 0.7303 2.5346 16 6 2.3016 -0.8425 3.6240 17 7 3.0405 -1.9361 3.5224 18 7 3.5713 -2.5199 4.5314 19 6 3.4464 -2.0879 5.7704 20 6 2.6805 -0.9377 6.0193 21 6 2.4831 -0.4224 7.3085 22 6 1.7260 0.6987 7.4713 23 6 1.1455 1.3398 6.3783 24 6 1.3162 0.8651 5.1114 25 6 2.0821 -0.2868 4.9069 26 6 2.0399 -0.7213 -1.2493 27 6 1.0257 -1.0227 -2.3544 28 6 1.5647 -2.1573 -1.4794 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.9900 0.6024 -0.0006 35 1 7.2060 3.7682 0.0000 36 1 2.5601 -1.4903 1.1073 37 1 3.9160 -2.6193 6.5849 38 1 2.9270 -0.9095 8.1642 39 1 1.5727 1.0966 8.4635 40 1 0.5500 2.2265 6.5375 41 1 0.8601 1.3719 4.2738 42 1 3.0567 -0.4728 -1.5533 43 1 -0.0049 -0.7076 -2.1913 44 1 1.3753 -0.9730 -3.3856 45 1 2.2687 -2.8534 -1.9353 46 1 0.8884 -2.5880 -0.7410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318706119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:31 Heat of formation + Delta-G solvation = 72.235475 kcal Electronic energy + Delta-G solvation = -30140.964402 eV Core-core repulsion = 26224.903085 eV Total energy + Delta-G solvation = -3916.061317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.64144 -41.31815 -39.17972 -39.02573 -36.56835 -35.19915 -34.57142 -33.39537 -32.85964 -31.84296 -31.00332 -27.84184 -26.97327 -25.36447 -25.15109 -24.00836 -23.79492 -23.15873 -22.04252 -20.43535 -19.82768 -19.64317 -19.17756 -18.54488 -17.33031 -16.94388 -16.82241 -16.66725 -16.52208 -16.15006 -15.64396 -15.56501 -15.47623 -15.09310 -14.81299 -14.68550 -14.48004 -13.93384 -13.89386 -13.63987 -13.45802 -13.35452 -13.18968 -12.92789 -12.61536 -12.58496 -12.40781 -12.32107 -12.05476 -12.01808 -11.89000 -11.70771 -11.28998 -11.14135 -11.00567 -10.88587 -10.59169 -10.42797 -10.15478 -9.54630 -9.31162 -8.08587 -5.39764 -1.14904 -0.49414 0.53160 1.27191 1.30097 1.36384 1.46093 1.79743 2.08604 2.39567 2.69862 2.86071 2.98123 3.22323 3.27142 3.38449 3.48251 3.56836 3.67132 3.68771 3.79601 3.92988 4.09557 4.14431 4.17097 4.21640 4.31362 4.41505 4.52356 4.60141 4.74355 4.76900 4.81508 4.83420 4.93474 4.96876 5.01091 5.04490 5.16153 5.22225 5.30060 5.30340 5.36079 5.41377 5.54578 5.69992 5.75214 6.15191 6.38127 7.00239 7.01871 7.53592 7.78003 7.98667 9.13428 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.004641 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.660707 B = 6031.096448 C = 7203.993434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.204 3.796 3 C 0.148 3.852 4 N -0.748 5.748 5 C -0.227 4.227 6 H 0.055 0.945 7 C -0.058 4.058 8 N -0.981 5.981 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.295 1.295 12 H -0.265 1.265 13 N -0.687 5.687 14 C 0.580 3.420 15 O -0.536 6.536 16 C 0.046 3.954 17 N -0.250 5.250 18 N -0.303 5.303 19 C 0.116 3.884 20 C -0.103 4.103 21 C -0.081 4.081 22 C -0.092 4.092 23 C -0.090 4.090 24 C -0.124 4.124 25 C -0.071 4.071 26 C -0.186 4.186 27 C -0.153 4.153 28 C -0.160 4.160 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.029 0.971 34 H 0.363 0.637 35 H 0.258 0.742 36 H 0.411 0.589 37 H 0.229 0.771 38 H 0.187 0.813 39 H 0.176 0.824 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.845 -15.336 13.814 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.119 3.881 3 C 0.021 3.979 4 N -0.393 5.393 5 C -0.358 4.358 6 H 0.073 0.927 7 C -0.250 4.250 8 N -0.632 5.632 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.222 1.222 12 H -0.191 1.191 13 N -0.337 5.337 14 C 0.364 3.636 15 O -0.413 6.413 16 C -0.112 4.112 17 N -0.086 5.086 18 N -0.135 5.135 19 C -0.057 4.057 20 C -0.110 4.110 21 C -0.101 4.101 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.144 4.144 25 C -0.078 4.078 26 C -0.205 4.205 27 C -0.190 4.190 28 C -0.197 4.197 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.197 0.803 35 H 0.067 0.933 36 H 0.247 0.753 37 H 0.246 0.754 38 H 0.204 0.796 39 H 0.193 0.807 40 H 0.174 0.826 41 H 0.167 0.833 42 H 0.109 0.891 43 H 0.134 0.866 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.678 -15.660 12.740 24.385 hybrid contribution 0.937 0.527 0.534 1.201 sum -12.741 -15.133 13.274 23.823 Atomic orbital electron populations 1.22230 0.91936 1.03307 1.03786 1.20090 0.95120 0.90336 0.82561 1.21115 0.82872 0.95015 0.98879 1.42567 1.02332 1.03700 1.90750 1.19022 0.89728 0.86348 1.40737 0.92738 1.25363 0.97022 0.99636 1.02966 1.69866 1.07073 1.26243 1.60031 0.85544 0.78028 0.80619 0.78453 1.19469 1.22218 1.19066 1.45910 1.53245 1.30102 1.04416 1.17584 0.80672 0.82547 0.82822 1.90551 1.36795 1.28235 1.85748 1.23030 0.97978 0.95508 0.94660 1.72582 1.04505 1.06262 1.25264 1.72525 1.17215 1.25747 0.98037 1.25554 0.91370 0.91800 0.96953 1.19268 0.99104 0.97214 0.95452 1.21494 0.97552 0.96288 0.94722 1.21659 0.94421 0.94334 1.00710 1.21667 0.97576 1.00010 0.91635 1.21930 0.97369 0.94501 1.00597 1.18865 0.99039 0.97561 0.92384 1.22323 1.00333 1.00456 0.97365 1.23215 0.98963 1.01383 0.95430 1.23063 1.03589 0.89982 1.03070 0.91739 0.89640 0.90512 0.94581 0.95340 0.80294 0.93345 0.75278 0.75428 0.79602 0.80656 0.82600 0.83260 0.89113 0.86585 0.87779 0.87601 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 7.06 71.98 0.51 -3.60 16 2 C 0.20 6.59 0.54 3.61 0.00 6.59 16 3 C 0.15 6.31 4.95 86.38 0.43 6.74 16 4 N -0.75 -37.70 4.84 -343.45 -1.66 -39.37 16 5 C -0.23 -13.82 10.47 84.03 0.88 -12.94 16 6 H 0.05 3.63 8.06 -2.91 -0.02 3.61 16 7 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 8 N -0.98 -65.38 13.97 21.65 0.30 -65.08 16 9 Si 0.95 48.67 27.73 68.60 1.90 50.57 16 10 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 12 H -0.27 -12.99 6.52 99.48 0.65 -12.34 16 13 N -0.69 -23.08 4.72 -425.71 -2.01 -25.09 16 14 C 0.58 21.22 7.19 86.80 0.62 21.84 16 15 O -0.54 -20.79 9.82 -3.87 -0.04 -20.83 16 16 C 0.05 1.61 6.90 42.43 0.29 1.90 16 17 N -0.25 -8.58 10.70 -47.74 -0.51 -9.09 16 18 N -0.30 -9.06 11.42 -56.15 -0.64 -9.71 16 19 C 0.12 2.45 11.20 85.23 0.95 3.40 16 20 C -0.10 -2.31 5.75 -21.31 -0.12 -2.43 16 21 C -0.08 -1.08 9.84 22.29 0.22 -0.86 16 22 C -0.09 -1.18 9.95 22.08 0.22 -0.96 16 23 C -0.09 -1.71 9.95 22.11 0.22 -1.49 16 24 C -0.12 -3.53 9.27 22.22 0.21 -3.32 16 25 C -0.07 -2.16 5.77 -21.13 -0.12 -2.29 16 26 C -0.19 -5.28 4.86 -10.79 -0.05 -5.33 16 27 C -0.15 -3.23 9.63 30.62 0.29 -2.93 16 28 C -0.16 -3.34 9.74 30.62 0.30 -3.04 16 29 H 0.06 1.97 6.09 -2.38 -0.01 1.96 16 30 H 0.08 1.98 6.80 -2.39 -0.02 1.96 16 31 H 0.08 1.71 6.99 -2.39 -0.02 1.69 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.03 1.36 6.25 -2.39 -0.01 1.34 16 34 H 0.36 17.73 4.49 -92.71 -0.42 17.31 16 35 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 36 H 0.41 13.14 7.79 -92.70 -0.72 12.42 16 37 H 0.23 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.15 4.95 5.12 -2.91 -0.01 4.94 16 42 H 0.09 3.09 7.08 -2.39 -0.02 3.07 16 43 H 0.12 2.13 5.88 -2.39 -0.01 2.11 16 44 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.10 2.00 7.37 -2.39 -0.02 1.98 16 Total: -1.00 -83.19 369.37 2.51 -80.68 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.15 Total: 39.80 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.32 Total: -1.89 kcal Atomic # 7 Polarization: -143.81 SS G_CDS: -4.52 Total: -148.33 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.04 Total: -20.83 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 1.90 Total: 50.57 kcal Total: -83.19 2.51 -80.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318706119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.913 kcal (2) G-P(sol) polarization free energy of solvation -83.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds