Wall clock time and date at job start Sat Apr 11 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 N 1.46499 * 109.47223 * 300.00100 * 3 2 1 5 5 C 1.36934 * 120.00222 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00448 * 179.97438 * 5 4 3 8 8 N 1.31624 * 119.99710 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00385 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47024 * 59.99827 * 9 7 5 11 11 H 1.48498 * 109.47477 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47289 * 300.00288 * 9 7 5 13 13 N 1.46508 * 109.47069 * 240.00149 * 2 1 3 14 14 C 1.34778 * 119.99467 * 183.94397 * 13 2 1 15 15 O 1.21538 * 120.00288 * 5.19169 * 14 13 2 16 16 C 1.47915 * 119.99427 * 185.19112 * 14 13 2 17 17 N 1.32376 * 120.63580 * 354.26441 * 16 14 13 18 18 N 1.28089 * 123.17678 * 179.68562 * 17 16 14 19 19 C 1.31807 * 123.49793 * 0.61630 * 18 17 16 20 20 C 1.40403 * 119.13706 * 359.69909 * 19 18 17 21 21 C 1.40236 * 122.74541 * 180.02562 * 20 19 18 22 22 C 1.36248 * 119.37051 * 179.97438 * 21 20 19 23 23 C 1.39382 * 121.07972 * 359.97438 * 22 21 20 24 24 C 1.36363 * 121.08011 * 0.02562 * 23 22 21 25 25 C 1.39830 * 119.42138 * 359.97438 * 24 23 22 26 26 C 1.53003 * 109.47125 * 120.00043 * 2 1 3 27 27 C 1.53002 * 117.49542 * 57.07739 * 26 2 1 28 28 C 1.52997 * 117.49890 * 348.45293 * 26 2 1 29 29 H 1.08996 * 109.46990 * 299.99639 * 1 2 3 30 30 H 1.08998 * 109.47155 * 59.99959 * 1 2 3 31 31 H 1.09005 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47009 * 60.00163 * 3 2 1 33 33 H 1.09001 * 109.47573 * 179.97438 * 3 2 1 34 34 H 0.96996 * 120.00068 * 359.97438 * 4 3 2 35 35 H 0.97000 * 119.99967 * 179.97438 * 8 7 5 36 36 H 0.96994 * 119.99879 * 3.93667 * 13 2 1 37 37 H 1.07993 * 120.42987 * 179.68086 * 19 18 17 38 38 H 1.07999 * 120.31178 * 359.97438 * 21 20 19 39 39 H 1.08003 * 119.46342 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.45860 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.28688 * 180.02562 * 24 23 22 42 42 H 1.09000 * 115.56048 * 202.76230 * 26 2 1 43 43 H 1.09004 * 117.49586 * 145.02147 * 27 26 2 44 44 H 1.08994 * 117.50428 * 359.97438 * 27 26 2 45 45 H 1.09009 * 117.49919 * 0.02562 * 28 26 2 46 46 H 1.08997 * 117.49971 * 214.97598 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5517 2.1331 -1.1961 5 6 1.8821 3.4442 -1.4126 6 1 2.5031 3.9691 -0.7017 7 6 1.4199 4.0985 -2.5462 8 7 0.6644 3.4584 -3.4134 9 14 1.8712 5.8868 -2.8418 10 1 3.3479 6.0167 -2.9298 11 1 1.2576 6.3487 -4.1129 12 1 1.3674 6.7168 -1.7182 13 7 2.0184 -0.6906 -1.1963 14 6 3.3409 -0.8837 -1.3701 15 8 4.1213 -0.5703 -0.4927 16 6 3.8424 -1.4770 -2.6288 17 7 2.9996 -1.9266 -3.5453 18 7 3.3800 -2.4435 -4.6539 19 6 4.6455 -2.5918 -4.9910 20 6 5.6445 -2.1608 -4.1036 21 6 7.0130 -2.2812 -4.3854 22 6 7.9243 -1.8391 -3.4742 23 6 7.5183 -1.2695 -2.2686 24 6 6.1960 -1.1371 -1.9626 25 6 5.2324 -1.5798 -2.8740 26 6 2.0400 -0.7213 1.2493 27 6 1.5800 -2.1638 1.4693 28 6 1.0219 -1.0406 2.3457 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 0.9944 1.6616 -1.8348 35 1 0.3410 3.9157 -4.2054 36 1 1.3899 -1.0089 -1.8630 37 1 4.9106 -3.0394 -5.9375 38 1 7.3413 -2.7202 -5.3159 39 1 8.9786 -1.9315 -3.6895 40 1 8.2631 -0.9274 -1.5653 41 1 5.8957 -0.6934 -1.0248 42 1 3.0517 -0.4624 1.5617 43 1 2.2891 -2.8539 1.9267 44 1 0.9138 -2.5989 0.7245 45 1 -0.0114 -0.7373 2.1769 46 1 1.3637 -0.9919 3.3796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318706129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:34 Heat of formation + Delta-G solvation = 92.364551 kcal Electronic energy + Delta-G solvation = -30007.382653 eV Core-core repulsion = 26092.194198 eV Total energy + Delta-G solvation = -3915.188455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53456 -39.94673 -38.11019 -37.66990 -34.99074 -33.60544 -33.30699 -31.88315 -31.37669 -30.37093 -29.23603 -26.29292 -25.69312 -24.35739 -23.85550 -23.03424 -22.24653 -21.42827 -21.10494 -18.98675 -18.36575 -18.21639 -17.46706 -17.20854 -16.26631 -15.85461 -15.47749 -15.25816 -14.81716 -14.73289 -14.39844 -14.28872 -14.06860 -13.84012 -13.57037 -13.15545 -12.83122 -12.68348 -12.45822 -12.33172 -12.07225 -11.89524 -11.66134 -11.43916 -11.26354 -11.03642 -10.88785 -10.78018 -10.64880 -10.58987 -10.23390 -10.14937 -9.89299 -9.76610 -9.62661 -9.49965 -9.31834 -8.80083 -8.72433 -8.52141 -6.84239 -5.70849 -2.98319 -0.09829 0.50122 1.50476 2.62537 3.09098 3.23853 3.47027 3.51234 3.52321 3.86402 3.92936 4.10041 4.25785 4.38656 4.50402 4.58255 4.60713 4.82142 4.88081 4.99899 5.06916 5.11087 5.19765 5.35683 5.38162 5.48836 5.50624 5.62527 5.64605 5.68220 5.78097 5.79547 5.97085 6.02504 6.05194 6.18893 6.22581 6.23907 6.26196 6.31606 6.51134 6.51511 6.63554 6.65193 6.86218 7.04032 7.74847 7.79261 8.41064 8.47929 8.69033 9.59157 10.16778 10.52130 11.51904 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007999 B = 0.004614 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.804072 B = 6067.572670 C = 7949.895286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.198 3.802 3 C 0.147 3.853 4 N -0.727 5.727 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.288 1.288 11 H -0.292 1.292 12 H -0.286 1.286 13 N -0.681 5.681 14 C 0.590 3.410 15 O -0.524 6.524 16 C 0.080 3.920 17 N -0.228 5.228 18 N -0.262 5.262 19 C 0.095 3.905 20 C -0.086 4.086 21 C -0.100 4.100 22 C -0.096 4.096 23 C -0.107 4.107 24 C -0.084 4.084 25 C -0.046 4.046 26 C -0.144 4.144 27 C -0.176 4.176 28 C -0.181 4.181 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.409 0.591 37 H 0.179 0.821 38 H 0.139 0.861 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.176 0.824 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -16.390 3.155 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.113 3.887 3 C 0.019 3.981 4 N -0.372 5.372 5 C -0.366 4.366 6 H 0.086 0.914 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.215 1.215 11 H -0.218 1.218 12 H -0.213 1.213 13 N -0.331 5.331 14 C 0.373 3.627 15 O -0.400 6.400 16 C -0.078 4.078 17 N -0.064 5.064 18 N -0.094 5.094 19 C -0.079 4.079 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.126 4.126 24 C -0.103 4.103 25 C -0.054 4.054 26 C -0.163 4.163 27 C -0.213 4.213 28 C -0.218 4.218 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.245 0.755 37 H 0.196 0.804 38 H 0.156 0.844 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.193 0.807 42 H 0.135 0.865 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.119 0.881 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.161 -16.198 3.348 18.908 hybrid contribution 1.392 0.977 -0.665 1.826 sum 10.553 -15.221 2.683 18.715 Atomic orbital electron populations 1.22136 0.93155 1.01599 1.04395 1.20162 0.93900 0.92409 0.82268 1.21004 0.97777 0.88025 0.91333 1.42282 1.61388 1.10510 1.23035 1.19163 1.25441 0.87615 1.04392 0.91387 1.24695 1.00691 0.98123 0.97441 1.69644 1.39480 1.36063 1.13026 0.86301 0.77788 0.85247 0.77068 1.21469 1.21755 1.21276 1.45842 1.06427 1.57013 1.23781 1.17219 0.83151 0.78114 0.84239 1.90547 1.55319 1.51927 1.42252 1.23117 0.91076 0.97162 0.96445 1.72731 1.31503 1.05358 0.96845 1.72629 1.16519 1.10732 1.09523 1.24776 0.89761 0.94098 0.99310 1.18907 0.95855 0.99861 0.94672 1.20905 0.90705 1.00220 1.00154 1.21135 1.00159 0.96568 0.93724 1.21257 0.96511 0.97958 0.96889 1.22080 0.91840 0.95617 1.00796 1.18624 0.93628 0.98213 0.94936 1.22596 0.99938 0.97327 0.96447 1.22820 1.03739 0.91603 1.03135 1.23141 0.99498 1.03367 0.95801 0.90445 0.90439 0.92630 0.95359 0.94482 0.78278 0.93578 0.75476 0.80425 0.84364 0.85118 0.84927 0.80682 0.86489 0.89450 0.89115 0.88109 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 7.04 37.16 0.26 -2.09 16 2 C 0.20 3.29 0.54 -131.81 -0.07 3.22 16 3 C 0.15 3.09 5.02 -4.05 -0.02 3.07 16 4 N -0.73 -18.52 5.17 -59.91 -0.31 -18.83 16 5 C -0.23 -6.71 9.99 -15.06 -0.15 -6.86 16 6 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 9 Si 0.90 23.00 29.55 -169.99 -5.02 17.97 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.68 -11.58 4.70 -48.51 -0.23 -11.81 16 14 C 0.59 10.53 7.19 -12.30 -0.09 10.44 16 15 O -0.52 -9.63 10.40 5.33 0.06 -9.58 16 16 C 0.08 1.37 6.90 -82.42 -0.57 0.80 16 17 N -0.23 -3.98 10.70 33.56 0.36 -3.62 16 18 N -0.26 -4.18 11.42 30.90 0.35 -3.83 16 19 C 0.09 1.16 11.20 -16.75 -0.19 0.98 16 20 C -0.09 -1.08 5.75 -106.85 -0.61 -1.70 16 21 C -0.10 -0.92 9.84 -39.55 -0.39 -1.31 16 22 C -0.10 -0.85 9.95 -39.87 -0.40 -1.24 16 23 C -0.11 -1.12 9.95 -39.83 -0.40 -1.52 16 24 C -0.08 -1.17 9.26 -39.66 -0.37 -1.54 16 25 C -0.05 -0.71 5.77 -106.57 -0.61 -1.32 16 26 C -0.14 -2.10 4.05 -90.62 -0.37 -2.46 16 27 C -0.18 -2.18 9.81 -26.73 -0.26 -2.45 16 28 C -0.18 -2.17 9.61 -26.73 -0.26 -2.43 16 29 H 0.08 1.11 6.84 -51.93 -0.35 0.75 16 30 H 0.08 1.36 6.86 -51.93 -0.36 1.00 16 31 H 0.05 0.71 7.01 -51.93 -0.36 0.34 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.85 6.64 -51.93 -0.34 0.50 16 34 H 0.38 10.13 6.35 -40.82 -0.26 9.87 16 35 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.41 6.76 7.87 -40.82 -0.32 6.44 16 37 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.18 2.66 5.12 -52.48 -0.27 2.40 16 42 H 0.12 1.88 7.18 -51.93 -0.37 1.50 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.09 1.11 7.42 -51.93 -0.39 0.72 16 45 H 0.10 1.16 5.87 -51.92 -0.30 0.85 16 46 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -33.87 373.66 -8.86 -42.73 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -5.84 Total: 16.12 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -4.59 Total: -6.91 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: 0.90 Total: -65.97 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.06 Total: -9.58 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.87 -8.86 -42.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318706129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.097 kcal (2) G-P(sol) polarization free energy of solvation -33.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds