Wall clock time and date at job start Sat Apr 11 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47265 * 2 1 4 4 N 1.46499 * 109.47223 * 300.00100 * 3 2 1 5 5 C 1.36934 * 120.00222 * 179.97438 * 4 3 2 6 6 H 1.08006 * 120.00175 * 0.02562 * 5 4 3 7 7 C 1.38814 * 120.00448 * 179.97438 * 5 4 3 8 8 N 1.31624 * 119.99710 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00385 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47024 * 59.99827 * 9 7 5 11 11 H 1.48498 * 109.47477 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47289 * 300.00288 * 9 7 5 13 13 N 1.46508 * 109.47069 * 240.00149 * 2 1 3 14 14 C 1.34778 * 119.99467 * 183.94397 * 13 2 1 15 15 O 1.21538 * 120.00288 * 5.19169 * 14 13 2 16 16 C 1.47915 * 119.99427 * 185.19112 * 14 13 2 17 17 N 1.32376 * 120.63580 * 354.26441 * 16 14 13 18 18 N 1.28089 * 123.17678 * 179.68562 * 17 16 14 19 19 C 1.31807 * 123.49793 * 0.61630 * 18 17 16 20 20 C 1.40403 * 119.13706 * 359.69909 * 19 18 17 21 21 C 1.40236 * 122.74541 * 180.02562 * 20 19 18 22 22 C 1.36248 * 119.37051 * 179.97438 * 21 20 19 23 23 C 1.39382 * 121.07972 * 359.97438 * 22 21 20 24 24 C 1.36363 * 121.08011 * 0.02562 * 23 22 21 25 25 C 1.39830 * 119.42138 * 359.97438 * 24 23 22 26 26 C 1.53003 * 109.47125 * 120.00043 * 2 1 3 27 27 C 1.53002 * 117.49542 * 57.07739 * 26 2 1 28 28 C 1.52997 * 117.49890 * 348.45293 * 26 2 1 29 29 H 1.08996 * 109.46990 * 299.99639 * 1 2 3 30 30 H 1.08998 * 109.47155 * 59.99959 * 1 2 3 31 31 H 1.09005 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47009 * 60.00163 * 3 2 1 33 33 H 1.09001 * 109.47573 * 179.97438 * 3 2 1 34 34 H 0.96996 * 120.00068 * 359.97438 * 4 3 2 35 35 H 0.97000 * 119.99967 * 179.97438 * 8 7 5 36 36 H 0.96994 * 119.99879 * 3.93667 * 13 2 1 37 37 H 1.07993 * 120.42987 * 179.68086 * 19 18 17 38 38 H 1.07999 * 120.31178 * 359.97438 * 21 20 19 39 39 H 1.08003 * 119.46342 * 179.97438 * 22 21 20 40 40 H 1.08003 * 119.45860 * 180.02562 * 23 22 21 41 41 H 1.08005 * 120.28688 * 180.02562 * 24 23 22 42 42 H 1.09000 * 115.56048 * 202.76230 * 26 2 1 43 43 H 1.09004 * 117.49586 * 145.02147 * 27 26 2 44 44 H 1.08994 * 117.50428 * 359.97438 * 27 26 2 45 45 H 1.09009 * 117.49919 * 0.02562 * 28 26 2 46 46 H 1.08997 * 117.49971 * 214.97598 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.5517 2.1331 -1.1961 5 6 1.8821 3.4442 -1.4126 6 1 2.5031 3.9691 -0.7017 7 6 1.4199 4.0985 -2.5462 8 7 0.6644 3.4584 -3.4134 9 14 1.8712 5.8868 -2.8418 10 1 3.3479 6.0167 -2.9298 11 1 1.2576 6.3487 -4.1129 12 1 1.3674 6.7168 -1.7182 13 7 2.0184 -0.6906 -1.1963 14 6 3.3409 -0.8837 -1.3701 15 8 4.1213 -0.5703 -0.4927 16 6 3.8424 -1.4770 -2.6288 17 7 2.9996 -1.9266 -3.5453 18 7 3.3800 -2.4435 -4.6539 19 6 4.6455 -2.5918 -4.9910 20 6 5.6445 -2.1608 -4.1036 21 6 7.0130 -2.2812 -4.3854 22 6 7.9243 -1.8391 -3.4742 23 6 7.5183 -1.2695 -2.2686 24 6 6.1960 -1.1371 -1.9626 25 6 5.2324 -1.5798 -2.8740 26 6 2.0400 -0.7213 1.2493 27 6 1.5800 -2.1638 1.4693 28 6 1.0219 -1.0406 2.3457 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 0.9944 1.6616 -1.8348 35 1 0.3410 3.9157 -4.2054 36 1 1.3899 -1.0089 -1.8630 37 1 4.9106 -3.0394 -5.9375 38 1 7.3413 -2.7202 -5.3159 39 1 8.9786 -1.9315 -3.6895 40 1 8.2631 -0.9274 -1.5653 41 1 5.8957 -0.6934 -1.0248 42 1 3.0517 -0.4624 1.5617 43 1 2.2891 -2.8539 1.9267 44 1 0.9138 -2.5989 0.7245 45 1 -0.0114 -0.7373 2.1769 46 1 1.3637 -0.9919 3.3796 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318706129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:33 Heat of formation + Delta-G solvation = 69.523555 kcal Electronic energy + Delta-G solvation = -30008.373113 eV Core-core repulsion = 26092.194198 eV Total energy + Delta-G solvation = -3916.178915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.59402 -41.22698 -39.07762 -38.89521 -36.62145 -35.15528 -34.47429 -33.13081 -32.82344 -31.56465 -30.70373 -27.83553 -26.90761 -25.63552 -25.33705 -24.11839 -23.29791 -22.90087 -22.31450 -20.27792 -19.58928 -19.29874 -19.13546 -18.45819 -17.35796 -16.98101 -16.91507 -16.57425 -16.34429 -15.94823 -15.63153 -15.53371 -15.31372 -15.02664 -14.98324 -14.65557 -14.48114 -13.69273 -13.61651 -13.61185 -13.33142 -13.24958 -12.99995 -12.79421 -12.57771 -12.54610 -12.48190 -12.21365 -12.08403 -12.02804 -11.75932 -11.68513 -11.31998 -11.05362 -10.98087 -10.83659 -10.52015 -10.40639 -10.06328 -9.52438 -8.99230 -7.96360 -5.24127 -1.10650 -0.46399 0.55917 1.41956 1.45259 1.51481 1.52163 1.88203 2.13175 2.52884 2.75289 2.88997 3.05032 3.30682 3.36062 3.42409 3.53828 3.60107 3.71629 3.90037 3.95437 4.03488 4.16820 4.18839 4.23508 4.24087 4.32166 4.44464 4.49786 4.60126 4.75014 4.78521 4.84387 4.88559 4.95979 4.98141 5.00657 5.10483 5.19710 5.27181 5.30025 5.32189 5.36332 5.41341 5.44884 5.59796 5.77254 6.24739 6.44011 7.07783 7.32007 7.58572 8.06850 8.33276 9.26425 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007999 B = 0.004614 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.804072 B = 6067.572670 C = 7949.895286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.205 3.795 3 C 0.150 3.850 4 N -0.733 5.733 5 C -0.245 4.245 6 H 0.068 0.932 7 C -0.071 4.071 8 N -0.965 5.965 9 Si 0.970 3.030 10 H -0.284 1.284 11 H -0.293 1.293 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.582 3.418 15 O -0.539 6.539 16 C 0.048 3.952 17 N -0.250 5.250 18 N -0.304 5.304 19 C 0.113 3.887 20 C -0.103 4.103 21 C -0.082 4.082 22 C -0.092 4.092 23 C -0.090 4.090 24 C -0.124 4.124 25 C -0.071 4.071 26 C -0.165 4.165 27 C -0.164 4.164 28 C -0.161 4.161 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.031 0.969 33 H 0.014 0.986 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.409 0.591 37 H 0.229 0.771 38 H 0.186 0.814 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.548 -17.585 2.567 21.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.120 3.880 3 C 0.022 3.978 4 N -0.376 5.376 5 C -0.377 4.377 6 H 0.086 0.914 7 C -0.263 4.263 8 N -0.616 5.616 9 Si 0.799 3.201 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.200 1.200 13 N -0.331 5.331 14 C 0.366 3.634 15 O -0.416 6.416 16 C -0.110 4.110 17 N -0.086 5.086 18 N -0.136 5.136 19 C -0.060 4.060 20 C -0.111 4.111 21 C -0.101 4.101 22 C -0.111 4.111 23 C -0.109 4.109 24 C -0.143 4.143 25 C -0.078 4.078 26 C -0.184 4.184 27 C -0.201 4.201 28 C -0.198 4.198 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.209 0.791 35 H 0.059 0.941 36 H 0.245 0.755 37 H 0.245 0.755 38 H 0.203 0.797 39 H 0.194 0.806 40 H 0.175 0.825 41 H 0.167 0.833 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.418 -17.406 2.795 21.003 hybrid contribution 0.917 1.290 -0.502 1.661 sum 12.335 -16.116 2.294 20.424 Atomic orbital electron populations 1.22084 0.91751 1.03149 1.03484 1.20030 0.94768 0.89870 0.83336 1.21047 0.96299 0.90870 0.89568 1.42391 1.61191 1.09897 1.24161 1.19530 1.24860 0.88965 1.04364 0.91411 1.25491 1.01153 1.02315 0.97384 1.69809 1.40822 1.37575 1.13391 0.85266 0.77455 0.80420 0.76967 1.21044 1.21867 1.20022 1.45884 1.06384 1.56903 1.23949 1.17529 0.83210 0.77948 0.84691 1.90535 1.55620 1.52572 1.42884 1.23080 0.92472 0.99089 0.96395 1.72603 1.32512 1.05972 0.97546 1.72527 1.18782 1.12865 1.09409 1.25548 0.88434 0.91613 1.00406 1.19271 0.97873 1.00199 0.93720 1.21486 0.88691 0.98235 1.01687 1.21655 1.02433 0.94800 0.92251 1.21661 0.95316 0.95838 0.98084 1.21921 0.93512 0.98395 1.00490 1.18870 0.92945 0.99324 0.96707 1.22340 0.99892 0.99434 0.96771 1.22869 1.03528 0.90624 1.03088 1.23262 0.99116 1.01574 0.95816 0.89352 0.93217 0.89800 0.95149 0.96808 0.79110 0.94067 0.75538 0.75512 0.79669 0.80591 0.82476 0.83273 0.88505 0.88627 0.88684 0.87064 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 7.04 71.98 0.51 -4.02 16 2 C 0.21 7.16 0.54 3.60 0.00 7.16 16 3 C 0.15 6.65 5.02 86.38 0.43 7.08 16 4 N -0.73 -39.17 5.17 -343.45 -1.78 -40.95 16 5 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 6 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 7 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 8 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 9 Si 0.97 48.07 29.55 68.60 2.03 50.10 16 10 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 13 N -0.68 -24.94 4.70 -425.68 -2.00 -26.94 16 14 C 0.58 22.61 7.19 86.81 0.62 23.23 16 15 O -0.54 -21.69 10.40 -3.84 -0.04 -21.73 16 16 C 0.05 1.77 6.90 42.44 0.29 2.06 16 17 N -0.25 -9.31 10.70 -47.73 -0.51 -9.82 16 18 N -0.30 -9.90 11.42 -56.16 -0.64 -10.54 16 19 C 0.11 2.61 11.20 85.22 0.95 3.56 16 20 C -0.10 -2.46 5.75 -21.31 -0.12 -2.58 16 21 C -0.08 -1.15 9.84 22.29 0.22 -0.93 16 22 C -0.09 -1.22 9.95 22.08 0.22 -1.00 16 23 C -0.09 -1.72 9.95 22.11 0.22 -1.50 16 24 C -0.12 -3.58 9.26 22.22 0.21 -3.37 16 25 C -0.07 -2.26 5.77 -21.13 -0.12 -2.38 16 26 C -0.16 -4.92 4.05 -10.79 -0.04 -4.97 16 27 C -0.16 -3.96 9.81 30.60 0.30 -3.65 16 28 C -0.16 -3.62 9.61 30.60 0.29 -3.33 16 29 H 0.09 2.49 6.84 -2.39 -0.02 2.47 16 30 H 0.05 1.81 6.86 -2.39 -0.02 1.80 16 31 H 0.08 2.08 7.01 -2.38 -0.02 2.06 16 32 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.01 0.69 6.64 -2.39 -0.02 0.67 16 34 H 0.38 21.01 6.35 -92.71 -0.59 20.42 16 35 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.41 14.68 7.87 -92.71 -0.73 13.95 16 37 H 0.23 2.58 8.06 -2.91 -0.02 2.55 16 38 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 39 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.15 5.02 5.12 -2.91 -0.01 5.00 16 42 H 0.10 3.29 7.18 -2.39 -0.02 3.28 16 43 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.09 2.22 7.42 -2.39 -0.02 2.21 16 45 H 0.11 2.30 5.87 -2.38 -0.01 2.29 16 46 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -79.55 373.66 2.36 -77.19 By element: Atomic # 1 Polarization: 45.66 SS G_CDS: -0.27 Total: 45.38 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.29 Total: -2.04 kcal Atomic # 7 Polarization: -144.25 SS G_CDS: -4.65 Total: -148.90 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -79.55 2.36 -77.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318706129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.711 kcal (2) G-P(sol) polarization free energy of solvation -79.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds