Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47226 * 2 1 4 4 C 1.53008 * 109.46966 * 240.00026 * 2 1 3 5 5 C 1.50693 * 109.46984 * 60.00024 * 4 2 1 6 6 H 1.08004 * 120.00523 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99950 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00203 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46821 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47451 * 119.99630 * 9 7 5 12 12 H 1.48497 * 109.47055 * 240.00058 * 9 7 5 13 13 C 1.52995 * 109.47526 * 119.99840 * 2 1 3 14 14 N 1.46497 * 109.47443 * 300.00358 * 13 2 1 15 15 C 1.34778 * 120.00682 * 179.97438 * 14 13 2 16 16 O 1.21362 * 119.99360 * 0.02562 * 15 14 13 17 17 C 1.49335 * 120.00275 * 179.97438 * 15 14 13 18 18 O 1.21384 * 120.00304 * 0.02562 * 17 15 14 19 19 N 1.34780 * 119.99853 * 179.97438 * 17 15 14 20 20 C 1.39933 * 119.99680 * 180.02562 * 19 17 15 21 21 C 1.40462 * 125.98431 * 359.97438 * 20 19 17 22 22 C 1.35215 * 107.86762 * 179.97438 * 21 20 19 23 23 N 1.34993 * 107.87565 * 0.02562 * 22 21 20 24 24 C 1.46498 * 125.96688 * 180.02562 * 23 22 21 25 25 C 1.53000 * 109.46743 * 125.00303 * 24 23 22 26 26 F 1.39907 * 109.46845 * 179.97438 * 25 24 23 27 27 N 1.31274 * 125.97818 * 179.97438 * 20 19 17 28 28 H 1.09001 * 109.47271 * 299.99278 * 1 2 3 29 29 H 1.08995 * 109.47604 * 60.00606 * 1 2 3 30 30 H 1.09005 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47716 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46967 * 300.00203 * 3 2 1 33 33 H 1.09003 * 109.47233 * 59.99804 * 3 2 1 34 34 H 1.08999 * 109.46463 * 179.97438 * 4 2 1 35 35 H 1.08991 * 109.47091 * 299.99679 * 4 2 1 36 36 H 0.96994 * 120.00209 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47886 * 179.97438 * 13 2 1 38 38 H 1.09005 * 109.46953 * 60.00182 * 13 2 1 39 39 H 0.97005 * 119.99986 * 359.97438 * 14 13 2 40 40 H 0.96995 * 119.99987 * 0.02562 * 19 17 15 41 41 H 1.07998 * 126.06499 * 0.02562 * 21 20 19 42 42 H 1.08000 * 126.05881 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.46909 * 244.99884 * 24 23 22 44 44 H 1.08996 * 109.47340 * 5.00335 * 24 23 22 45 45 H 1.08998 * 109.47364 * 299.99918 * 25 24 23 46 46 H 1.09006 * 109.47230 * 59.99925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6263 -1.5515 -3.8527 9 14 1.2470 0.3979 -5.2572 10 1 0.4216 1.5644 -4.8530 11 1 2.4016 0.8645 -6.0661 12 1 0.4217 -0.5357 -6.0649 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8770 -0.4913 3.6695 16 8 2.5748 -1.4780 3.7808 17 6 1.3796 0.2130 4.8889 18 8 0.6820 1.2001 4.7776 19 7 1.7044 -0.2481 6.1130 20 6 1.2380 0.4116 7.2555 21 6 0.4282 1.5592 7.2731 22 6 0.1971 1.8840 8.5651 23 7 0.8341 0.9806 9.3399 24 6 0.8463 0.9597 10.8047 25 6 0.3630 -0.4051 11.2993 26 9 0.3752 -0.4253 12.6981 27 7 1.4805 0.0662 8.4985 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 2.8600 -1.8833 -4.7337 37 1 3.1300 -0.7216 1.2490 38 1 1.6768 -1.7489 1.2492 39 1 0.9943 0.7582 2.3565 40 1 2.2615 -1.0371 6.2020 41 1 0.0556 2.0877 6.4081 42 1 -0.3926 2.7184 8.9151 43 1 1.8606 1.1374 11.1621 44 1 0.1854 1.7387 11.1847 45 1 -0.6512 -0.5828 10.9418 46 1 1.0239 -1.1842 10.9192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335962445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = -44.396889 kcal Electronic energy + Delta-G solvation = -28512.525967 eV Core-core repulsion = 24160.637866 eV Total energy + Delta-G solvation = -4351.888101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.28799 -41.87387 -40.65439 -38.84348 -37.25107 -35.79986 -33.96039 -33.49982 -32.13160 -30.59899 -29.02679 -27.45159 -26.84997 -26.54873 -25.09053 -23.70163 -22.81224 -21.97839 -20.96017 -20.21059 -19.06340 -18.05732 -17.67392 -17.18979 -16.81315 -16.38578 -16.34723 -16.24391 -16.08998 -15.47196 -15.23631 -14.88805 -14.52220 -14.40411 -14.13904 -13.92528 -13.55029 -13.42412 -13.26062 -13.17563 -12.83139 -12.27046 -12.19947 -12.09812 -11.75096 -11.54257 -11.24052 -11.21986 -11.07332 -11.05177 -10.85518 -10.68125 -10.48245 -10.28323 -9.94399 -9.82181 -9.30265 -9.23740 -9.04244 -8.96495 -8.70599 -8.38983 -6.02978 -4.04269 0.95334 1.50790 1.55545 2.33226 2.48208 3.16635 3.28958 3.37293 3.39407 3.43708 3.69142 3.97185 4.25083 4.35154 4.38039 4.43631 4.51523 4.65184 4.98438 5.12769 5.22923 5.32757 5.35829 5.36423 5.52069 5.68418 5.70670 6.09723 6.11064 6.15071 6.29963 6.31423 6.31811 6.53228 6.54654 6.59792 6.64566 7.00176 7.03190 7.05143 7.16519 7.40521 7.52894 7.59692 7.70795 7.91884 7.95676 8.37018 9.00579 9.59280 11.08438 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.039987 B = 0.001642 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.066643 B =17052.414657 C =17448.456599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.073 4.073 3 C -0.130 4.130 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.124 3.876 14 N -0.682 5.682 15 C 0.506 3.494 16 O -0.520 6.520 17 C 0.520 3.480 18 O -0.492 6.492 19 N -0.612 5.612 20 C 0.303 3.697 21 C -0.262 4.262 22 C 0.068 3.932 23 N -0.371 5.371 24 C 0.111 3.889 25 C 0.051 3.949 26 F -0.209 7.209 27 N -0.317 5.317 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.412 0.588 40 H 0.429 0.571 41 H 0.176 0.824 42 H 0.181 0.819 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.240 6.400 28.512 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.074 4.074 3 C -0.188 4.188 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.334 5.334 15 C 0.285 3.715 16 O -0.397 6.397 17 C 0.301 3.699 18 O -0.363 6.363 19 N -0.262 5.262 20 C 0.047 3.953 21 C -0.292 4.292 22 C -0.077 4.077 23 N -0.156 5.156 24 C -0.011 4.011 25 C -0.005 4.005 26 F -0.190 7.190 27 N -0.147 5.147 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.250 0.750 40 H 0.267 0.733 41 H 0.194 0.806 42 H 0.198 0.802 43 H 0.115 0.885 44 H 0.128 0.872 45 H 0.100 0.900 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.585 5.475 29.201 30.062 hybrid contribution -0.614 0.918 -1.302 1.707 sum -5.199 6.393 27.900 29.091 Atomic orbital electron populations 1.21795 0.95028 1.01324 1.00600 1.20948 0.95724 0.96018 0.94683 1.21796 1.00623 0.95733 1.00601 1.19100 0.96428 0.95251 0.89340 1.21213 1.31191 1.12128 0.90448 0.92119 1.25012 0.95285 0.95071 0.99121 1.69969 1.36970 1.23030 1.23384 0.86582 0.78608 0.79684 0.83387 1.19770 1.21139 1.21145 1.21899 0.99479 0.96326 0.82096 1.46051 1.50990 1.31591 1.04798 1.19540 0.82434 0.85131 0.84395 1.90800 1.37049 1.25377 1.86454 1.20505 0.80717 0.84585 0.84075 1.90700 1.34944 1.24500 1.86197 1.42261 1.50930 1.31002 1.01999 1.19106 0.96311 0.93482 0.86364 1.21933 1.08521 1.00819 0.97944 1.22672 0.98346 0.95915 0.90727 1.47925 1.40408 1.22060 1.05206 1.22187 1.04834 0.99287 0.74787 1.22201 1.04176 0.98326 0.75775 1.92803 1.98185 1.97587 1.30395 1.77371 1.23080 1.15579 0.98699 0.95019 0.91181 0.93228 0.93221 0.91187 0.95013 0.96215 0.96214 0.93073 0.90869 0.90875 0.75002 0.73300 0.80637 0.80165 0.88512 0.87180 0.89999 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.24 7.65 -34.44 -0.26 -13.51 16 6 H 0.06 1.52 5.68 -52.48 -0.30 1.22 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.12 2.02 4.56 -4.05 -0.02 2.00 16 14 N -0.68 -9.53 4.95 -60.77 -0.30 -9.83 16 15 C 0.51 7.06 7.89 -11.64 -0.09 6.97 16 16 O -0.52 -8.34 16.48 5.49 0.09 -8.25 16 17 C 0.52 6.50 7.85 -11.64 -0.09 6.41 16 18 O -0.49 -6.56 13.60 5.47 0.07 -6.48 16 19 N -0.61 -6.88 5.43 -11.58 -0.06 -6.94 16 20 C 0.30 3.44 8.10 -154.55 -1.25 2.19 16 21 C -0.26 -2.67 9.60 -39.82 -0.38 -3.05 16 22 C 0.07 0.49 11.43 -17.24 -0.20 0.29 16 23 N -0.37 -2.84 3.68 -61.38 -0.23 -3.07 16 24 C 0.11 0.48 6.96 -4.04 -0.03 0.46 16 25 C 0.05 0.26 7.74 37.16 0.29 0.54 16 26 F -0.21 -1.41 17.36 2.25 0.04 -1.37 16 27 N -0.32 -3.36 12.43 31.41 0.39 -2.97 16 28 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 29 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.29 6.62 -51.92 -0.34 0.94 16 33 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.41 5.34 5.63 -40.82 -0.23 5.11 16 40 H 0.43 4.35 8.29 -40.82 -0.34 4.01 16 41 H 0.18 1.92 5.91 -52.49 -0.31 1.61 16 42 H 0.18 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.18 8.07 -51.93 -0.42 -0.24 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -31.68 386.18 -6.55 -38.24 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.36 Total: 4.91 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.73 Total: -0.75 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.54 Total: -47.96 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.16 Total: -14.74 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.68 -6.55 -38.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335962445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.161 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds