Wall clock time and date at job start Sat Apr 11 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47226 * 2 1 4 4 C 1.53008 * 109.46966 * 240.00026 * 2 1 3 5 5 C 1.50693 * 109.46984 * 60.00024 * 4 2 1 6 6 H 1.08004 * 120.00523 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99950 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00203 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46821 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47451 * 119.99630 * 9 7 5 12 12 H 1.48497 * 109.47055 * 240.00058 * 9 7 5 13 13 C 1.52995 * 109.47526 * 119.99840 * 2 1 3 14 14 N 1.46497 * 109.47443 * 300.00358 * 13 2 1 15 15 C 1.34778 * 120.00682 * 179.97438 * 14 13 2 16 16 O 1.21362 * 119.99360 * 0.02562 * 15 14 13 17 17 C 1.49335 * 120.00275 * 179.97438 * 15 14 13 18 18 O 1.21384 * 120.00304 * 0.02562 * 17 15 14 19 19 N 1.34780 * 119.99853 * 179.97438 * 17 15 14 20 20 C 1.39933 * 119.99680 * 180.02562 * 19 17 15 21 21 C 1.40462 * 125.98431 * 359.97438 * 20 19 17 22 22 C 1.35215 * 107.86762 * 179.97438 * 21 20 19 23 23 N 1.34993 * 107.87565 * 0.02562 * 22 21 20 24 24 C 1.46498 * 125.96688 * 180.02562 * 23 22 21 25 25 C 1.53000 * 109.46743 * 125.00303 * 24 23 22 26 26 F 1.39907 * 109.46845 * 179.97438 * 25 24 23 27 27 N 1.31274 * 125.97818 * 179.97438 * 20 19 17 28 28 H 1.09001 * 109.47271 * 299.99278 * 1 2 3 29 29 H 1.08995 * 109.47604 * 60.00606 * 1 2 3 30 30 H 1.09005 * 109.46856 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47716 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46967 * 300.00203 * 3 2 1 33 33 H 1.09003 * 109.47233 * 59.99804 * 3 2 1 34 34 H 1.08999 * 109.46463 * 179.97438 * 4 2 1 35 35 H 1.08991 * 109.47091 * 299.99679 * 4 2 1 36 36 H 0.96994 * 120.00209 * 179.97438 * 8 7 5 37 37 H 1.08997 * 109.47886 * 179.97438 * 13 2 1 38 38 H 1.09005 * 109.46953 * 60.00182 * 13 2 1 39 39 H 0.97005 * 119.99986 * 359.97438 * 14 13 2 40 40 H 0.96995 * 119.99987 * 0.02562 * 19 17 15 41 41 H 1.07998 * 126.06499 * 0.02562 * 21 20 19 42 42 H 1.08000 * 126.05881 * 180.02562 * 22 21 20 43 43 H 1.09001 * 109.46909 * 244.99884 * 24 23 22 44 44 H 1.08996 * 109.47340 * 5.00335 * 24 23 22 45 45 H 1.08998 * 109.47364 * 299.99918 * 25 24 23 46 46 H 1.09006 * 109.47230 * 59.99925 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0109 -2.4797 6 1 0.9164 0.8670 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 2.6263 -1.5515 -3.8527 9 14 1.2470 0.3979 -5.2572 10 1 0.4216 1.5644 -4.8530 11 1 2.4016 0.8645 -6.0661 12 1 0.4217 -0.5357 -6.0649 13 6 2.0401 -0.7212 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8770 -0.4913 3.6695 16 8 2.5748 -1.4780 3.7808 17 6 1.3796 0.2130 4.8889 18 8 0.6820 1.2001 4.7776 19 7 1.7044 -0.2481 6.1130 20 6 1.2380 0.4116 7.2555 21 6 0.4282 1.5592 7.2731 22 6 0.1971 1.8840 8.5651 23 7 0.8341 0.9806 9.3399 24 6 0.8463 0.9597 10.8047 25 6 0.3630 -0.4051 11.2993 26 9 0.3752 -0.4253 12.6981 27 7 1.4805 0.0662 8.4985 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 -0.7208 -1.2495 35 1 1.6767 -1.7489 -1.2493 36 1 2.8600 -1.8833 -4.7337 37 1 3.1300 -0.7216 1.2490 38 1 1.6768 -1.7489 1.2492 39 1 0.9943 0.7582 2.3565 40 1 2.2615 -1.0371 6.2020 41 1 0.0556 2.0877 6.4081 42 1 -0.3926 2.7184 8.9151 43 1 1.8606 1.1374 11.1621 44 1 0.1854 1.7387 11.1847 45 1 -0.6512 -0.5828 10.9418 46 1 1.0239 -1.1842 10.9192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335962445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:36 Heat of formation + Delta-G solvation = -65.090721 kcal Electronic energy + Delta-G solvation = -28513.423319 eV Core-core repulsion = 24160.637866 eV Total energy + Delta-G solvation = -4352.785453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.75662 -42.62284 -41.65313 -39.96483 -38.67310 -36.65123 -35.29033 -34.31140 -33.90927 -31.26964 -29.70194 -29.15974 -28.21143 -27.95105 -26.23527 -24.79710 -24.00534 -22.76735 -21.80540 -21.19445 -20.24069 -19.12606 -18.56718 -18.33092 -17.95077 -17.50203 -17.28222 -17.01274 -16.75603 -16.57276 -16.32373 -16.08548 -15.78710 -15.38756 -15.21948 -14.80243 -14.74536 -14.57625 -14.36670 -14.01353 -13.92604 -13.84734 -13.73440 -12.89228 -12.87704 -12.70780 -12.62149 -12.59773 -12.31937 -12.22517 -12.12828 -11.95316 -11.87290 -11.68390 -11.53713 -11.11352 -10.87351 -10.73161 -10.49415 -10.30027 -10.00097 -9.41427 -8.12141 -6.18963 -0.01933 0.72886 0.86217 1.43105 1.45002 1.54928 1.56460 1.65115 2.17240 2.43916 2.50245 3.22949 3.23450 3.26888 3.64857 3.83795 3.92040 4.00025 4.06515 4.07653 4.22324 4.23442 4.45628 4.54284 4.67801 4.71523 4.73197 4.74880 4.80636 4.91599 4.97354 5.01461 5.14711 5.24779 5.44305 5.53259 5.54338 5.54773 5.58760 5.71407 5.81664 5.92548 6.01140 6.12472 6.34171 6.51673 6.65290 6.80214 6.96273 7.48650 9.00246 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.039987 B = 0.001642 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.066643 B =17052.414657 C =17448.456599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 C -0.125 4.125 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.071 0.929 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.956 3.044 10 H -0.258 1.258 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.136 3.864 14 N -0.674 5.674 15 C 0.511 3.489 16 O -0.543 6.543 17 C 0.529 3.471 18 O -0.499 6.499 19 N -0.605 5.605 20 C 0.280 3.720 21 C -0.293 4.293 22 C 0.093 3.907 23 N -0.365 5.365 24 C 0.108 3.892 25 C 0.054 3.946 26 F -0.218 7.218 27 N -0.340 5.340 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.065 0.935 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.259 0.741 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.420 0.580 40 H 0.431 0.569 41 H 0.166 0.834 42 H 0.227 0.773 43 H 0.102 0.898 44 H 0.147 0.853 45 H 0.089 0.911 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 8.762 30.605 32.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.067 4.067 3 C -0.183 4.183 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.089 0.911 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.782 3.218 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.013 3.987 14 N -0.327 5.327 15 C 0.291 3.709 16 O -0.421 6.421 17 C 0.309 3.691 18 O -0.371 6.371 19 N -0.255 5.255 20 C 0.025 3.975 21 C -0.323 4.323 22 C -0.053 4.053 23 N -0.149 5.149 24 C -0.013 4.013 25 C -0.002 4.002 26 F -0.199 7.199 27 N -0.171 5.171 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.259 0.741 40 H 0.270 0.730 41 H 0.184 0.816 42 H 0.244 0.756 43 H 0.120 0.880 44 H 0.165 0.835 45 H 0.107 0.893 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.222 7.849 31.333 32.895 hybrid contribution -0.103 0.170 -1.785 1.796 sum -6.325 8.020 29.548 31.264 Atomic orbital electron populations 1.21732 0.93691 1.01260 1.01584 1.20744 0.96697 0.96331 0.92894 1.21733 1.00238 0.94717 1.01583 1.18968 0.94588 0.94331 0.91832 1.21633 1.30273 1.12044 0.91143 0.91061 1.25894 0.95726 0.95866 1.02556 1.70112 1.38818 1.24901 1.23965 0.85529 0.78010 0.78823 0.79465 1.18213 1.21156 1.21165 1.21532 0.98889 0.95870 0.82379 1.45817 1.51072 1.31655 1.04171 1.19753 0.81725 0.84676 0.84732 1.90794 1.38008 1.26429 1.86819 1.20001 0.80819 0.84387 0.83887 1.90705 1.35440 1.24742 1.86249 1.42135 1.50538 1.30923 1.01916 1.19312 0.97422 0.94336 0.86409 1.21981 1.09906 1.01190 0.99201 1.23276 0.96673 0.95854 0.89506 1.48216 1.39251 1.21270 1.06197 1.22482 1.06172 0.99842 0.72792 1.22173 1.04367 0.98596 0.75081 1.92785 1.98227 1.97646 1.31233 1.77309 1.24039 1.16986 0.98769 0.91630 0.92499 0.93879 0.93884 0.92504 0.91629 0.99028 0.99019 0.93226 0.91720 0.91712 0.74056 0.73017 0.81649 0.75638 0.88001 0.83496 0.89272 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.05 71.98 0.58 -3.53 16 2 C -0.07 -2.39 0.54 -52.18 -0.03 -2.41 16 3 C -0.13 -4.11 8.05 71.98 0.58 -3.53 16 4 C 0.04 1.97 4.04 29.85 0.12 2.09 16 5 C -0.51 -26.84 7.65 25.60 0.20 -26.64 16 6 H 0.07 3.52 5.68 -2.91 -0.02 3.50 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -55.83 13.29 21.45 0.28 -55.54 16 9 Si 0.96 43.10 29.54 68.60 2.03 45.12 16 10 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 13 C 0.14 4.45 4.56 86.38 0.39 4.84 16 14 N -0.67 -18.09 4.95 -464.53 -2.30 -20.39 16 15 C 0.51 13.96 7.89 87.23 0.69 14.64 16 16 O -0.54 -17.42 16.48 -3.28 -0.05 -17.47 16 17 C 0.53 12.82 7.85 87.23 0.69 13.50 16 18 O -0.50 -12.69 13.60 -3.35 -0.05 -12.74 16 19 N -0.61 -13.41 5.43 -308.89 -1.68 -15.09 16 20 C 0.28 6.12 8.10 133.40 1.08 7.20 16 21 C -0.29 -5.48 9.60 22.11 0.21 -5.26 16 22 C 0.09 1.02 11.43 83.51 0.95 1.97 16 23 N -0.37 -4.62 3.68 -348.11 -1.28 -5.90 16 24 C 0.11 0.60 6.96 86.38 0.60 1.21 16 25 C 0.05 0.44 7.74 71.98 0.56 1.00 16 26 F -0.22 -2.57 17.36 44.97 0.78 -1.79 16 27 N -0.34 -6.82 12.43 -54.53 -0.68 -7.50 16 28 H 0.06 1.69 6.86 -2.39 -0.02 1.68 16 29 H 0.06 2.01 6.62 -2.39 -0.02 2.00 16 30 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 2.01 6.62 -2.38 -0.02 2.00 16 33 H 0.06 1.70 6.86 -2.39 -0.02 1.68 16 34 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 35 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 37 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.42 9.95 5.63 -92.70 -0.52 9.43 16 40 H 0.43 8.80 8.29 -92.71 -0.77 8.03 16 41 H 0.17 3.42 5.91 -2.91 -0.02 3.40 16 42 H 0.23 0.20 8.06 -2.91 -0.02 0.17 16 43 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.15 -0.21 8.07 -2.39 -0.02 -0.23 16 45 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -70.45 386.18 3.88 -66.57 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.26 Total: 19.40 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 7.08 Total: 5.34 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -5.65 Total: -104.43 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.10 Total: -30.21 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -70.45 3.88 -66.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335962445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.477 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds